Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

24588016 .. 24589886

Gene Structure 1871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCTCCTCTCTTGTTCATCTTCCTCCTACACATAATAACTGGTGCGGCCACACACCTGCAGACCGGTTATTACTCGGGAGTGTGTCCAAAAGCCGAATACATCGTCCGAGATGTCATGAGGAGGGCTTTGATGAGAGAACCCCGGAGCCTCGCCTCAGTCATGCGATTCCAATTTCACGATTGCTTTGTTAATACTGGAGGACCAGATTGGGAAGTGAAGTTGGGAAGATTGGATAGCTTAACAGCAAGCCAAGAAGCCTCAGACAATGTGATGCCAAGTCCAAGATCTAATGCAACCTTTCTCATTGATCTATTCAGCAAATTCAATCTTTCTGTCAAAGACATGGTTGCACTTTCTGGATCACACTCCATTGGCAAAGCTCGGTGCTTTTCCATCATGATTCGGCTTTACAACCAATCCGGCACTGGCAGGCCGGATCCTGCCATTGAACCCAAGTTTAGAGAAAAGCTAGACAAGCTTTGCCCTTTGAATGTGGACCAAAACGTGACCGGAGACCTTGATGCAACATCAGTGCTATTTGATAACCAGTACTTCAAGGACTTGGTTTCCGGCAGAGGGTTTCTGAATTCGGACCAAACACTTTACACATTTCCACAGACTAGGGGATTTGTGAGGCAGTTTAGTATAGACCAAGGAACCTTTTTCAAGGCCTTTGTTGAGGGGATGATAAAATTGGGTGACTTGCAGATCCAGCAACCTGGGGAGGTGAGAAGGAATTGTAGGGTGGTCAATGCATTGGGGAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

257

Amino Acids

28.82

Weight (kDa)

8.98

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	65 - 216	1.1e-38	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	66
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	4 cut(s)	370, 434, 447, 706
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	323, 589
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	579
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	328, 452, 493, 559, 670
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	4 cut(s)	240, 383, 472, 481
AluI	AGCT	4 cut(s)	240, 383, 472, 481
Alw26I	GTCTC	2 cut(s)	9, 510
AlwI	GGATC	4 cut(s)	370, 434, 447, 706
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	48, 434, 672
ApoI	RAATTY	2 cut(s)	323, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AsiGI	ACCGGT	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	203, 499, 595
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	713, 742
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	3 cut(s)	203, 499, 595
BamHI	GGATCC	1 cut(s)	439
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	723
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	9, 510
BfaI	CTAG	2 cut(s)	473, 624
BfmI	CTRYAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	145, 723
Bme18I	GGWCC	3 cut(s)	203, 499, 595
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	203, 499, 595
BmiI	GGNNCC	3 cut(s)	149, 441, 661
BmrFI	CCNGG	2 cut(s)	145, 723
BmsI	GCATC	2 cut(s)	264, 514
BpmI	CTGGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	143, 655, 722
BsaWI	WCCGGW	2 cut(s)	65, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	4 cut(s)	46, 202, 433, 550
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	143, 655, 722
BseGI	GGATG	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	171, 276
BseNI	ACTGG	4 cut(s)	46, 202, 433, 550
BseRI	GAGGAG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	50, 436, 674
BshTI	ACCGGT	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	6 cut(s)	66, 145, 423, 437, 513, 573
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	2 cut(s)	9, 510
BsnI	GGCC	3 cut(s)	50, 436, 674
Bso31I	GGTCTC	1 cut(s)	510
BsoBI	CYCGRG	1 cut(s)	76
Bsp143I	GATC	5 cut(s)	287, 310, 362, 439, 711
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	3 cut(s)	50, 436, 674
BspCNI	CTCAG	2 cut(s)	170, 275
BspHI	TCATGA	2 cut(s)	117, 399
BspLI	GGNNCC	3 cut(s)	149, 441, 661
BspMAI	CTGCAG	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	66
BspPI	GGATC	4 cut(s)	370, 434, 447, 706
BspTNI	GGTCTC	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	46, 202, 433, 550
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	143, 655, 722
BssMI	GATC	5 cut(s)	287, 310, 362, 439, 711
BssT1I	CCWWGG	1 cut(s)	655
Bst2UI	CCWGG	1 cut(s)	723
BstC8I	GCNNGC	2 cut(s)	250, 434
BstDEI	CTNAG	3 cut(s)	157, 262, 771
BstF5I	GGATG	1 cut(s)	693
BstKTI	GATC	5 cut(s)	290, 313, 365, 442, 714
BstMAI	GTCTC	2 cut(s)	9, 510
BstMBI	GATC	5 cut(s)	287, 310, 362, 439, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	478, 715
BstNI	CCWGG	1 cut(s)	723
BstSCI	CCNGG	2 cut(s)	143, 721
BstSFI	CTRYAG	1 cut(s)	59
BstX2I	RGATCY	3 cut(s)	287, 439, 711
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	3 cut(s)	287, 439, 711
BsuRI	GGCC	3 cut(s)	50, 436, 674
BtsCI	GGATG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	426, 540
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	250, 434
CciI	TCATGA	2 cut(s)	117, 399
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	203, 499, 595
Csp6I	GTAC	1 cut(s)	553
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	4 cut(s)	118, 163, 346, 400
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	3 cut(s)	157, 262, 771
DpnI	GATC	5 cut(s)	289, 312, 364, 441, 713
DpnII	GATC	5 cut(s)	287, 310, 362, 439, 711
EaeI	YGGCCR	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	655
Eco147I	AGGCCT	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	3 cut(s)	203, 499, 595
Eco88I	CYCGRG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	655
EcoT22I	ATGCAT	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	4 cut(s)	121, 166, 349, 403
FaiI	YATR	6 cut(s)	35, 119, 164, 347, 401, 650
FatI	CATG	4 cut(s)	117, 162, 345, 399
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	700
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	473, 624
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	50, 436, 674
HapII	CCGG	6 cut(s)	66, 145, 423, 437, 513, 573
Hin1II	CATG	4 cut(s)	121, 166, 349, 403
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	2 cut(s)	168, 403
HpaII	CCGG	6 cut(s)	66, 145, 423, 437, 513, 573
HphI	GGTGA	2 cut(s)	713, 742
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	110, 265, 588, 595
Hpy188III	TCNNGA	5 cut(s)	78, 118, 179, 360, 400
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	729
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	6 cut(s)	61, 296, 353, 527, 709, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	478, 715
HpyF3I	CTNAG	3 cut(s)	157, 262, 771
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	4 cut(s)	121, 166, 349, 403
Kzo9I	GATC	5 cut(s)	287, 310, 362, 439, 711
LmnI	GCTCC	1 cut(s)	147
LweI	GCATC	2 cut(s)	264, 514
MaeI	CTAG	2 cut(s)	473, 624
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	508, 701
MalI	GATC	5 cut(s)	289, 312, 364, 441, 713
MboI	GATC	5 cut(s)	287, 310, 362, 439, 711
MboII	GAAGA	2 cut(s)	13, 240
MflI	RGATCY	3 cut(s)	287, 439, 711
MluCI	AATT	5 cut(s)	173, 323, 589, 695, 739
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	2 cut(s)	192, 242
MspI	CCGG	6 cut(s)	66, 145, 423, 437, 513, 573
MspR9I	CCNGG	2 cut(s)	145, 723
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	478, 715
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	5 cut(s)	287, 310, 362, 439, 711
NlaIII	CATG	4 cut(s)	121, 166, 349, 403
NlaIV	GGNNCC	3 cut(s)	149, 441, 661
NmuCI	GTSAC	2 cut(s)	508, 701
NsiI	ATGCAT	1 cut(s)	760
PagI	TCATGA	2 cut(s)	117, 399
PaqCI	CACCTGC	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	168, 403
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	3 cut(s)	149, 441, 661
PspPI	GGNCC	3 cut(s)	203, 499, 595
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	287, 439, 711
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	2 cut(s)	192, 242
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	5 cut(s)	287, 310, 362, 439, 711
Sau96I	GGNCC	3 cut(s)	203, 499, 595
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	145, 723
SfaNI	GCATC	2 cut(s)	264, 514
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	3 cut(s)	203, 499, 595
Sse9I	AATT	5 cut(s)	173, 323, 589, 695, 739
SseBI	AGGCCT	1 cut(s)	674
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	2 cut(s)	473, 624
StuI	AGGCCT	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	143, 721
StyI	CCWWGG	1 cut(s)	655
TaiI	ACGT	1 cut(s)	510
TasI	AATT	5 cut(s)	173, 323, 589, 695, 739
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	168, 403
Tru1I	TTAA	2 cut(s)	192, 242
Tru9I	TTAA	2 cut(s)	192, 242
TscAI	CASTG	2 cut(s)	433, 540
TseFI	GTSAC	2 cut(s)	508, 701
Tsp45I	GTSAC	2 cut(s)	508, 701
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	433, 540
VpaK11BI	GGWCC	3 cut(s)	203, 499, 595
XapI	RAATTY	2 cut(s)	323, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XspI	CTAG	2 cut(s)	473, 624
ZrmI	AGTACT	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.