Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Reverse (-)

23977004 .. 23978338

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAGGCATCCAACAAACACAAATCTGCCTACTAGAGAGGATTGTCTGAAAACTTCAATGACTTCCTTCTTTTCTCTCTTCCTCCTACACTACATAATAATCGGGGCCGCCGTGCAACTCCGACCTCATTATTATTCCGAAACATGCCCGCAGACCGAATCTGTGGTCCGAGATGTCATGAAGGCGGCTCTGATCAAAGAGCCCCGGAGCCTTGCCTCTGTCATGCGCTTCCAATTCCATGATTGCTTTGTCAATGGTTGTGATGCATCTATGTTACTTGACGACACGCCAACCATCCTTGGAGAAAAACTAGCCCTTGCAAACATAAATTCATTGAGATCTTACGAGGTTATTGATGAAGCGAAAGAAGCCCTAGAGAAGGTCTGTCCGGGAATTGTTTCTTGTGCAGACATCATAATCATGGCCTCTAGAGATGCTGTTGCCCTGTTAGGAAGATTGGATAGCTTATCAGCTAGCCAGGAAGCCTCAGATAATGTTATGCCAAGTCCAAGAGCCAATGCAACCTTCCTCATTGACCTCTTTGCCAAATTTAATCTTTCGGCTGAAGATCTTGTTGCCCTTTCTGGGTCTCATTCCATTGGCCAAGCTCGGTGTTTCTCAATCATGTTTCGGCTGTACAACCAATCCGGCACTGGCCGGCCAGACCCCTCCATTGAACCAAACTTTACAGAAAAGCTAAACAAGCTTTGCCCTTTAAACGTGGACCAAAACGTCACCGGAGACCTAGATGCTACGCCTGTAGTGTTCGACAACCAGTACTTCAAGGACTTGGTTTCCGGGAGAGGGTTTCTCAATTCGGATCAAACGCTTGTCACATTTCCGGAAACGAGGGGATTTGTGGAGCAGTTTAGTAGTGACCAAGAAGAGTTTTTCAAGGCCTTTGTTGAGGGGATGATAAAGATGGGAGATTTGCAGGTTGAGCAGGCTGGGGAGGTGAGAACAAATTGCCGGGTGGTTAATAATCATCGTCCTGCGATTGCCAACACATGCAAGAGAATTGAAGGAATCGTAACGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

348

Amino Acids

38.48

Weight (kDa)

5.1

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	925
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	3 cut(s)	108, 149, 185
AclI	AACGTT	1 cut(s)	1034
AclWI	GGATC	1 cut(s)	828
AcoI	YGGCCR	3 cut(s)	601, 655, 659
AcsI	RAATTY	2 cut(s)	328, 548
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	2 cut(s)	638, 779
AfiI	CCNNNNNNNGG	3 cut(s)	379, 585, 804
AgsI	TTSAA	5 cut(s)	57, 677, 784, 895, 1022
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	5 cut(s)	465, 473, 608, 697, 706
AluI	AGCT	5 cut(s)	465, 473, 608, 697, 706
Alw26I	GTCTC	2 cut(s)	594, 735
AlwI	GGATC	1 cut(s)	828
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	6 cut(s)	105, 423, 601, 655, 659, 897
ApoI	RAATTY	2 cut(s)	328, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	105, 166, 724
AsuC2I	CCSGG	4 cut(s)	205, 390, 799, 971
AsuHPI	GGTGA	2 cut(s)	727, 967
AsuNHI	GCTAGC	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	166, 724
BalI	TGGCCA	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	204
BccI	CCATC	2 cut(s)	302, 916
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	4 cut(s)	205, 390, 799, 971
BcoDI	GTCTC	2 cut(s)	594, 735
BfaI	CTAG	6 cut(s)	33, 311, 374, 429, 474, 746
BfmI	CTRYAG	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	925
BglII	AGATCT	2 cut(s)	338, 568
BisI	GCNGC	2 cut(s)	108, 186
BlsI	GCNGC	2 cut(s)	109, 187
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	5 cut(s)	205, 390, 479, 799, 971
Bme18I	GGWCC	2 cut(s)	166, 724
BmgT120I	GGNCC	3 cut(s)	105, 166, 724
BmiI	GGNNCC	2 cut(s)	106, 209
BmrFI	CCNGG	5 cut(s)	205, 390, 479, 799, 971
BmsI	GCATC	5 cut(s)	16, 253, 275, 424, 739
BmtI	GCTAGC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	795, 827
BpuMI	CCSGG	4 cut(s)	205, 390, 799, 971
BsaI	GGTCTC	2 cut(s)	594, 735
BsaJI	CCNNGG	2 cut(s)	203, 298
BsaWI	WCCGGW	2 cut(s)	737, 841
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 585, 804
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	2 cut(s)	658, 775
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	203, 298
BseGI	GGATG	3 cut(s)	7, 294, 918
BseLI	CCNNNNNNNGG	3 cut(s)	379, 585, 804
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	658, 775
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	107, 425, 603, 657, 661, 899
BsiSI	CCGG	8 cut(s)	205, 389, 648, 658, 738, 798, 842, 970
BslI	CCNNNNNNNGG	3 cut(s)	379, 585, 804
BsmAI	GTCTC	2 cut(s)	594, 735
BsnI	GGCC	6 cut(s)	107, 425, 603, 657, 661, 899
Bso31I	GGTCTC	2 cut(s)	594, 735
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	841
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	4 cut(s)	192, 338, 568, 820
BspACI	CCGC	3 cut(s)	108, 149, 185
BspANI	GGCC	6 cut(s)	107, 425, 603, 657, 661, 899
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	106, 209
BspMI	ACCTGC	1 cut(s)	925
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	828
BspTNI	GGTCTC	2 cut(s)	594, 735
BsrFI	RCCGGY	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	2 cut(s)	658, 775
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	203, 298
BssMI	GATC	4 cut(s)	192, 338, 568, 820
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	83, 879
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	4 cut(s)	149, 475, 659, 945
BstDEI	CTNAG	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	7, 294, 918
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	4 cut(s)	195, 341, 571, 823
BstMAI	GTCTC	2 cut(s)	594, 735
BstMBI	GATC	4 cut(s)	192, 338, 568, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 703, 940
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	147, 1011
BstSCI	CCNGG	5 cut(s)	203, 388, 477, 797, 969
BstSFI	CTRYAG	1 cut(s)	759
BstX2I	RGATCY	2 cut(s)	338, 568
BstYI	RGATCY	2 cut(s)	338, 568
BsuRI	GGCC	6 cut(s)	107, 425, 603, 657, 661, 899
BtsCI	GGATG	3 cut(s)	7, 294, 918
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	4 cut(s)	149, 475, 659, 945
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	105, 166, 724
Csp6I	GTAC	2 cut(s)	637, 778
CviAII	CATG	7 cut(s)	144, 178, 223, 239, 421, 625, 1008
CviQI	GTAC	2 cut(s)	637, 778
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	4 cut(s)	194, 340, 570, 822
DpnII	GATC	4 cut(s)	192, 338, 568, 820
DraI	TTTAAA	1 cut(s)	717
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
EaeI	YGGCCR	3 cut(s)	601, 655, 659
Eam1104I	CTCTTC	2 cut(s)	83, 879
EarI	CTCTTC	2 cut(s)	83, 879
Eco130I	CCWWGG	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	899
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	2 cut(s)	594, 735
Eco47I	GGWCC	2 cut(s)	166, 724
Eco57I	CTGAAG	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	7 cut(s)	147, 181, 226, 242, 424, 628, 1011
FatI	CATG	7 cut(s)	143, 177, 222, 238, 420, 624, 1007
FauI	CCCGC	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	108, 186
FokI	GGATG	2 cut(s)	281, 925
FriOI	GRGCYC	1 cut(s)	204
FseI	GGCCGGCC	1 cut(s)	661
Fsp4HI	GCNGC	2 cut(s)	108, 186
FspBI	CTAG	6 cut(s)	33, 311, 374, 429, 474, 746
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	108, 186
GsaI	CCCAGC	1 cut(s)	951
HaeIII	GGCC	6 cut(s)	107, 425, 603, 657, 661, 899
HapII	CCGG	8 cut(s)	205, 389, 648, 658, 738, 798, 842, 970
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	7 cut(s)	147, 181, 226, 242, 424, 628, 1011
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	2 cut(s)	158, 1026
HpaII	CCGG	8 cut(s)	205, 389, 648, 658, 738, 798, 842, 970
HphI	GGTGA	2 cut(s)	727, 967
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	7 cut(s)	48, 122, 139, 170, 192, 490, 820
Hpy188III	TCNNGA	3 cut(s)	178, 429, 842
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	5 cut(s)	76, 175, 373, 535, 1016
HpyCH4IV	ACGT	3 cut(s)	720, 732, 1034
HpyCH4V	TGCA	7 cut(s)	115, 266, 320, 407, 521, 934, 1011
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 703, 940
HpyF3I	CTNAG	1 cut(s)	487
HpySE526I	ACGT	3 cut(s)	720, 732, 1034
Hsp92II	CATG	7 cut(s)	147, 181, 226, 242, 424, 628, 1011
HspAI	GCGC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	841
KroI	GCCGGC	1 cut(s)	657
KroNI	GCCGGC	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	192, 338, 568, 820
LmnI	GCTCC	2 cut(s)	207, 862
LweI	GCATC	5 cut(s)	16, 253, 275, 424, 739
MaeI	CTAG	6 cut(s)	33, 311, 374, 429, 474, 746
MaeII	ACGT	3 cut(s)	720, 732, 1034
MaeIII	GTNAC	5 cut(s)	273, 733, 832, 875, 1030
MalI	GATC	4 cut(s)	194, 340, 570, 822
MboI	GATC	4 cut(s)	192, 338, 568, 820
MboII	GAAGA	4 cut(s)	70, 465, 578, 896
MflI	RGATCY	2 cut(s)	338, 568
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	7 cut(s)	233, 328, 393, 548, 814, 964, 1017
MluNI	TGGCCA	1 cut(s)	603
MmeI	TCCRAC	2 cut(s)	35, 145
Mox20I	TGGCCA	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	268
MroI	TCCGGA	1 cut(s)	841
MroNI	GCCGGC	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	3 cut(s)	552, 716, 978
MslI	CAYNNNNRTG	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	8 cut(s)	205, 389, 648, 658, 738, 798, 842, 970
MspR9I	CCNGG	5 cut(s)	205, 390, 479, 799, 971
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	368, 703, 940
NaeI	GCCGGC	1 cut(s)	659
NciI	CCSGG	4 cut(s)	205, 390, 799, 971
NdeII	GATC	4 cut(s)	192, 338, 568, 820
NgoMIV	GCCGGC	1 cut(s)	657
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	7 cut(s)	147, 181, 226, 242, 424, 628, 1011
NlaIV	GGNNCC	2 cut(s)	106, 209
NmuCI	GTSAC	3 cut(s)	733, 832, 875
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	147, 1011
PagI	TCATGA	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	899
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdiI	GCCGGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	158, 1026
PfoI	TCCNGGA	2 cut(s)	388, 797
PkrI	GCNGC	2 cut(s)	109, 187
Psp1406I	AACGTT	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	106, 209
PspPI	GGNCC	3 cut(s)	105, 166, 724
PsuI	RGATCY	2 cut(s)	338, 568
RigI	GGCCGGCC	1 cut(s)	661
RsaI	GTAC	2 cut(s)	638, 779
RsaNI	GTAC	2 cut(s)	637, 778
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	552, 716, 978
SatI	GCNGC	2 cut(s)	108, 186
Sau3AI	GATC	4 cut(s)	192, 338, 568, 820
Sau96I	GGNCC	3 cut(s)	105, 166, 724
ScaI	AGTACT	1 cut(s)	779
ScrFI	CCNGG	5 cut(s)	205, 390, 479, 799, 971
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	5 cut(s)	16, 253, 275, 424, 739
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	2 cut(s)	166, 724
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	7 cut(s)	233, 328, 393, 548, 814, 964, 1017
SseBI	AGGCCT	1 cut(s)	899
SsiI	CCGC	3 cut(s)	108, 149, 185
SspMI	CTAG	6 cut(s)	33, 311, 374, 429, 474, 746
StuI	AGGCCT	1 cut(s)	899
StyD4I	CCNGG	5 cut(s)	203, 388, 477, 797, 969
StyI	CCWWGG	1 cut(s)	298
TaiI	ACGT	3 cut(s)	723, 735, 1037
TaqI	TCGA	1 cut(s)	768
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	7 cut(s)	233, 328, 393, 548, 814, 964, 1017
TatI	WGTACW	2 cut(s)	636, 777
TauI	GCSGC	2 cut(s)	110, 188
TfiI	GAWTC	2 cut(s)	158, 1026
Tru1I	TTAA	3 cut(s)	552, 716, 978
Tru9I	TTAA	3 cut(s)	552, 716, 978
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	3 cut(s)	733, 832, 875
Tsp45I	GTSAC	3 cut(s)	733, 832, 875
TspDTI	ATGAA	3 cut(s)	194, 321, 372
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	2 cut(s)	166, 724
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	328, 548
XbaI	TCTAGA	1 cut(s)	428
XceI	RCATGY	2 cut(s)	147, 1011
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	6 cut(s)	33, 311, 374, 429, 474, 746
ZrmI	AGTACT	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.