Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002664

Physical Location & Seq

Genomic Coordinates Forward (+)

6296600 .. 6297683

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTTCGAGATGTCATGAAAGAGGCTTTGATCAGAGAGCCCCGGAGCCTTGCCTCTGTTATGCGCTTCCAATTCCATGATTGCTTTGTCAATGGTTGTGATGCTTCTATGTTACTTGATGACACACCAACCATGCTTGGGGAAAGACTAGCCCTTGCAAACATAAACTCATTGAGATCTTATGAGGTTGTCGATGAAGCGAAAGAAGCCTTGGAGAAGGTCTGTCCGGGAGTCGTTTCTTGCGCAGACATCATAATCATGGCCTCTAGAGATGCTGTTGCTCTGTTAGGAAGCTTGGATAGCTTATCAGCCAGCCAAGAAGCCTCAGACAACGTTATGCCAAGTCCAAGAGCTAATGCAACCTTCCTCATTGACCTGTTTACCAAATTTAATCTTTCGGTCAAAGATCTCGTTGCACTTTCGGGTTCGCATTCCATTGGCCAAGCTCGGTGTTTTTCCATCATGTTTCGTTTGTACAATCAATCCGGCACTGGCCGGCCAGACCCTGCCATTGAACCAAAGTTCAGAGAAAAGCTAAACAAGCTTTGCCCGTTAAACGTGGACCAAAACATCACCGGAGACCTAGATGCTACACCTGTAGTGTTCGACAACCAGTACTTCAAGGACTTGGTTTTCAGGAGAGGGTTTCTCAATTCGGATCAAACGCTTTTCACATTTCCAGAAACGAGGGGATTTGTGGAGCAGTTTAGCAGTGATCAAGAAGAGTTTTTCAAGGCCTTTGTGGAAGGGATGATAAAGATGGGTGATTTGCAGGTTGAGCAGCCTGGGGAGGTGAGAAGAAATTGCAGGGTGGTTAATAGTCATCGTCCTGCCAGTGCCAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009505 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009987 GO:0010228 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

283

Amino Acids

31.41

Weight (kDa)

5.05

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22420
fragaria_vesca	FvH4_1g20350 FvH4_1g20360 FvH4_1g20360
malus_domestica	MD01G1034400.v1.1 MD01G1034500.v1.1 MD01G1034900.v1.1 MD15G1321200.v1.1 MD15G1321300.v1.1 MD15G1321400.v1.1
prunus_persica	Prupe.6G191800_v2.0.a1 Prupe.6G191900_v2.0.a1 Prupe.6G192000_v2.0.a1
pyrus_communis	pycom01g06150 pycom01g06160 pycom01g06190 pycom15g28200 pycom15g28210
rosa_chinensis	RchiOBHm_Chr2g0112481 RchiOBHm_Chr2g0112491
rosa_laevigata	RLG00000017984 RLG00000017985
rosa_multiflora	Rmu_co8298115.1_g000001 Rmu_co8310909.1_g000001 Rmu_sc0013522.1_g000001 Rmu_sc0026466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131380 Rroxscaffold_2G00131390
rosa_rugosa	Rorug02G0181300 Rorug02G0181300
rosa_samantha	Rh2AG234300 Rh2AG234400 Rh2BG247900 Rh2BG248000 Rh2CG238900 Rh2CG239000 Rh2DG241900 Rh2DG242000
rosa_wichuraiana	Rw2G018150 Rw2G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	763
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	3 cut(s)	439, 493, 497
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	476, 617
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	515, 622, 733
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	6 cut(s)	294, 303, 353, 446, 535, 544
AluI	AGCT	6 cut(s)	294, 303, 353, 446, 535, 544
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	666
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	5 cut(s)	261, 439, 493, 497, 735
ApeKI	GCWGC	1 cut(s)	781
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	66, 245
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	2 cut(s)	43, 228
AsuHPI	GGTGA	3 cut(s)	565, 776, 805
AvaII	GGWCC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	2 cut(s)	467, 754
BciT130I	CCWGG	1 cut(s)	786
BclI	TGATCA	2 cut(s)	30, 715
BcnI	CCSGG	2 cut(s)	43, 228
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	3 cut(s)	149, 267, 584
BfmI	CTRYAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	763
BglII	AGATCT	2 cut(s)	176, 406
BisI	GCNGC	1 cut(s)	782
BlsI	GCNGC	1 cut(s)	783
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	3 cut(s)	43, 228, 786
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	3 cut(s)	43, 228, 786
BmsI	GCATC	3 cut(s)	91, 262, 577
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
BpuMI	CCSGG	2 cut(s)	43, 228
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	41, 210, 785
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	495
Bse1I	ACTGG	3 cut(s)	496, 613, 834
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	3 cut(s)	41, 210, 785
BseGI	GGATG	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	3 cut(s)	496, 613, 834
BseXI	GCAGC	1 cut(s)	793
BshFI	GGCC	5 cut(s)	263, 441, 495, 499, 737
BsiSI	CCGG	5 cut(s)	43, 227, 486, 496, 576
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	5 cut(s)	263, 441, 495, 499, 737
Bso31I	GGTCTC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	30, 176, 406, 658, 715
BspANI	GGCC	5 cut(s)	263, 441, 495, 499, 737
BspCNI	CTCAG	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	3 cut(s)	496, 613, 834
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	3 cut(s)	41, 210, 785
BssMI	GATC	5 cut(s)	30, 176, 406, 658, 715
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	786
Bst6I	CTCTTC	1 cut(s)	717
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	313, 497
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	756
BstHHI	GCGC	2 cut(s)	66, 245
BstKTI	GATC	5 cut(s)	33, 179, 409, 661, 718
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	5 cut(s)	30, 176, 406, 658, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 300, 541, 778
BstNI	CCWGG	1 cut(s)	786
BstSCI	CCNGG	3 cut(s)	41, 226, 784
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	793
BstX2I	RGATCY	2 cut(s)	176, 406
BstYI	RGATCY	2 cut(s)	176, 406
BsuRI	GGCC	5 cut(s)	263, 441, 495, 499, 737
BtsCI	GGATG	1 cut(s)	756
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	3 cut(s)	489, 718, 841
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	2 cut(s)	313, 497
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	2 cut(s)	66, 245
Cfr10I	RCCGGY	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	475, 616
CviAII	CATG	6 cut(s)	16, 77, 133, 259, 463, 846
CviQI	GTAC	2 cut(s)	475, 616
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	5 cut(s)	32, 178, 408, 660, 717
DpnII	GATC	5 cut(s)	30, 176, 406, 658, 715
EaeI	YGGCCR	3 cut(s)	439, 493, 497
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	737
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	6 cut(s)	19, 80, 136, 262, 466, 849
FatI	CATG	6 cut(s)	15, 76, 132, 258, 462, 845
FbaI	TGATCA	2 cut(s)	30, 715
Fnu4HI	GCNGC	1 cut(s)	782
FokI	GGATG	1 cut(s)	763
FriOI	GRGCYC	1 cut(s)	42
FseI	GGCCGGCC	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	782
FspBI	CTAG	3 cut(s)	149, 267, 584
FspI	TGCGCA	1 cut(s)	244
GlaI	GCGC	2 cut(s)	65, 244
GluI	GCNGC	1 cut(s)	782
HaeIII	GGCC	5 cut(s)	263, 441, 495, 499, 737
HapII	CCGG	5 cut(s)	43, 227, 486, 496, 576
HhaI	GCGC	2 cut(s)	66, 245
Hin1II	CATG	6 cut(s)	19, 80, 136, 262, 466, 849
Hin6I	GCGC	2 cut(s)	64, 243
HinP1I	GCGC	2 cut(s)	64, 243
HindIII	AAGCTT	2 cut(s)	292, 542
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	5 cut(s)	43, 227, 486, 496, 576
HphI	GGTGA	3 cut(s)	565, 776, 805
Hpy166II	GTNNAC	2 cut(s)	381, 562
Hpy188I	TCNGA	4 cut(s)	35, 328, 527, 658
Hpy188III	TCNNGA	6 cut(s)	8, 16, 267, 637, 680, 719
Hpy8I	GTNNAC	2 cut(s)	381, 562
HpyAV	CCTTC	3 cut(s)	211, 373, 740
HpyCH4IV	ACGT	2 cut(s)	333, 558
HpyCH4V	TGCA	5 cut(s)	158, 359, 416, 772, 807
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 300, 541, 778
HpyF3I	CTNAG	1 cut(s)	325
HpySE526I	ACGT	2 cut(s)	333, 558
Hsp92II	CATG	6 cut(s)	19, 80, 136, 262, 466, 849
HspAI	GCGC	2 cut(s)	64, 243
KroI	GCCGGC	1 cut(s)	495
KroNI	GCCGGC	1 cut(s)	497
Ksp22I	TGATCA	2 cut(s)	30, 715
Kzo9I	GATC	5 cut(s)	30, 176, 406, 658, 715
LmnI	GCTCC	2 cut(s)	45, 700
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	3 cut(s)	91, 262, 577
MaeI	CTAG	3 cut(s)	149, 267, 584
MaeII	ACGT	2 cut(s)	333, 558
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	5 cut(s)	32, 178, 408, 660, 717
MboI	GATC	5 cut(s)	30, 176, 406, 658, 715
MboII	GAAGA	2 cut(s)	734, 810
MflI	RGATCY	2 cut(s)	176, 406
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	4 cut(s)	71, 386, 652, 802
MluNI	TGGCCA	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	16, 64, 178, 274, 334, 377, 635, 681, 784
Mox20I	TGGCCA	1 cut(s)	441
MroNI	GCCGGC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	3 cut(s)	390, 554, 816
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	441
MspI	CCGG	5 cut(s)	43, 227, 486, 496, 576
MspR9I	CCNGG	3 cut(s)	43, 228, 786
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	4 cut(s)	206, 300, 541, 778
NaeI	GCCGGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	43, 228
NdeII	GATC	5 cut(s)	30, 176, 406, 658, 715
NgoMIV	GCCGGC	1 cut(s)	495
NlaIII	CATG	6 cut(s)	19, 80, 136, 262, 466, 849
NlaIV	GGNNCC	1 cut(s)	47
NsbI	TGCGCA	1 cut(s)	244
PagI	TCATGA	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	737
PctI	GAATGC	1 cut(s)	430
PdiI	GCCGGC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	783
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	176, 406
RigI	GGCCGGCC	1 cut(s)	499
RsaI	GTAC	2 cut(s)	476, 617
RsaNI	GTAC	2 cut(s)	475, 616
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	390, 554, 816
SatI	GCNGC	1 cut(s)	782
Sau3AI	GATC	5 cut(s)	30, 176, 406, 658, 715
Sau96I	GGNCC	1 cut(s)	562
ScaI	AGTACT	1 cut(s)	617
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	3 cut(s)	43, 228, 786
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	91, 262, 577
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	71, 386, 652, 802
SseBI	AGGCCT	1 cut(s)	737
SspMI	CTAG	3 cut(s)	149, 267, 584
StuI	AGGCCT	1 cut(s)	737
StyD4I	CCNGG	3 cut(s)	41, 226, 784
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	336, 561
TaqI	TCGA	3 cut(s)	7, 192, 606
TaqII	GACCGA	1 cut(s)	388
TasI	AATT	4 cut(s)	71, 386, 652, 802
TatI	WGTACW	2 cut(s)	474, 615
Tru1I	TTAA	3 cut(s)	390, 554, 816
Tru9I	TTAA	3 cut(s)	390, 554, 816
TscAI	CASTG	3 cut(s)	496, 718, 841
TseI	GCWGC	1 cut(s)	781
TspDTI	ATGAA	2 cut(s)	32, 210
TspRI	CASTG	3 cut(s)	496, 718, 841
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	266
XspI	CTAG	3 cut(s)	149, 267, 584
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.