Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006726

Physical Location & Seq

Genomic Coordinates Forward (+)

7124138 .. 7128061

Gene Structure 3924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCATTAAGAGATGGCGAGGGAGAAAATTCAGATCAAGAAGATCGACAACGCGACGGCGAGGCAGGTGACCTTTTCCAAGAGGAGAAGAGGCCTTTTCAAGAAGGCCGAGGATTTCTTCCACAGGAAAGCTCTTTGAATACGCCAGCTCTAGGGTTTATGAAGGAAATTCTAGAAAGGCACAACTTGCATTCAAAGAATCTCGAGAAACTAGAACAACCATCTCTTCAGCTACAGCTAGTGGAGAACAGCAACTACACCATGTTGAGCAAGGAAATTGCAGCAAAAAGTCATCAACTTAGGCAGATGAGAGGAGAAGAAATTCAAGGACTAAATTTGGAAGAACTCCAACAATTGGAGAAGTCCCTTGAAACTGGCTTGGGCCGCGTAATAGAGAAAAAGAGTGAAAAAATCATGAAAGAGATCGGTGATCTTCAAAGAAATGGGATGCAATTGATGGAAGAGAATGAACGATTAAGACAAGAAGTGGCGGAGAAATCTGATGGCCGGAGGCTTGTTCAGGTCGATTCAGAGAACATGTTTACGGAGGAGGGTCAGTCATCAGAGTCTGTCACCAATCCCTGTAACTCAAACAACGGTCCTCAAGACTACGACAGCTCAGATACATCTCTAAAATTGGGGTGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

217

Amino Acids

24.61

Weight (kDa)

4.72

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	83 - 163	4.3e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22540 AT2G22540 AT2G22540 AT4G24540
fragaria_vesca	FvH4_1g19710
malus_domestica	MD01G1038600.v1.1 MD15G1313200.v1.1
prunus_persica	Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1 Prupe.6G199000_v2.0.a1
pyrus_communis	pycom01g06650 pycom15g27660
rosa_chinensis	RchiOBHm_Chr2g0111271
rosa_laevigata	RLG00000017881
rosa_multiflora	Rmu_sc0011720.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132550
rosa_rugosa	Rorug02G0172600 Rorug02G0172600 Rorug02G0172600
rosa_samantha	Rh2AG225400 Rh2BG237200 Rh2CG228400 Rh2DG232800
rosa_wichuraiana	Rw2G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccII	CGCG	2 cut(s)	54, 387
AciI	CCGC	2 cut(s)	385, 491
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	4 cut(s)	28, 168, 321, 334
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	152, 355
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	6 cut(s)	101, 139, 195, 326, 371, 437
AluBI	AGCT	5 cut(s)	132, 149, 232, 238, 618
AluI	AGCT	5 cut(s)	132, 149, 232, 238, 618
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	92, 106, 382, 505
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	4 cut(s)	28, 168, 321, 334
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	382, 599
AsuHPI	GGTGA	3 cut(s)	80, 440, 565
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	8, 229, 451, 497
BceAI	ACGGC	1 cut(s)	73
BfaI	CTAG	4 cut(s)	152, 173, 212, 239
BfmI	CTRYAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	282, 385
BlsI	GCNGC	2 cut(s)	283, 386
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	382, 599
BmsI	GCATC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 355
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	152, 355
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	3 cut(s)	98, 327, 563
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	54, 387
BshFI	GGCC	4 cut(s)	94, 108, 384, 507
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	152, 355
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	94, 108, 384, 507
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	34, 43, 423, 430
BspACI	CCGC	2 cut(s)	385, 491
BspANI	GGCC	4 cut(s)	94, 108, 384, 507
BspCNI	CTCAG	1 cut(s)	632
BspFNI	CGCG	2 cut(s)	54, 387
BspHI	TCATGA	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	34, 43, 423, 430
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	3 cut(s)	83, 231, 456
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	299, 619
BstEII	GGTNACC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	2 cut(s)	54, 387
BstKTI	GATC	4 cut(s)	37, 46, 426, 433
BstMBI	GATC	4 cut(s)	34, 43, 423, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 384
BstNSI	RCATGY	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	2 cut(s)	54, 387
BstV1I	GCAGC	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	94, 108, 384, 507
BtsCI	GGATG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	382, 599
CviAII	CATG	3 cut(s)	262, 415, 538
DdeI	CTNAG	2 cut(s)	299, 619
DpnI	GATC	4 cut(s)	36, 45, 425, 432
DpnII	GATC	4 cut(s)	34, 43, 423, 430
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	83, 231, 456
EarI	CTCTTC	3 cut(s)	83, 231, 456
EciI	GGCGGA	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	68
EcoO65I	GGTNACC	1 cut(s)	68
FaeI	CATG	3 cut(s)	265, 418, 541
FaiI	YATR	4 cut(s)	161, 263, 416, 539
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	261, 414, 537
Fnu4HI	GCNGC	2 cut(s)	282, 385
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	282, 385
FspBI	CTAG	4 cut(s)	152, 173, 212, 239
GluI	GCNGC	2 cut(s)	282, 385
HaeIII	GGCC	4 cut(s)	94, 108, 384, 507
HapII	CCGG	1 cut(s)	508
Hin1II	CATG	3 cut(s)	265, 418, 541
HinfI	GANTC	3 cut(s)	199, 527, 566
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	3 cut(s)	80, 440, 565
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	5 cut(s)	34, 502, 532, 565, 622
Hpy188III	TCNNGA	7 cut(s)	38, 101, 173, 203, 205, 415, 605
Hpy8I	GTNNAC	1 cut(s)	543
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	98, 157
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	3 cut(s)	190, 281, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 384
HpyF3I	CTNAG	2 cut(s)	299, 619
Hsp92II	CATG	3 cut(s)	265, 418, 541
Kzo9I	GATC	4 cut(s)	34, 43, 423, 430
LpnPI	CCDG	7 cut(s)	51, 110, 159, 360, 506, 521, 595
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	4 cut(s)	152, 173, 212, 239
MaeIII	GTNAC	3 cut(s)	68, 571, 584
MalI	GATC	4 cut(s)	36, 45, 425, 432
MboI	GATC	4 cut(s)	34, 43, 423, 430
MboII	GAAGA	8 cut(s)	53, 100, 110, 218, 329, 353, 425, 473
MfeI	CAATTG	2 cut(s)	353, 452
MluCI	AATT	8 cut(s)	28, 168, 276, 321, 334, 353, 452, 635
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	3 cut(s)	8, 476, 649
MspI	CCGG	1 cut(s)	508
MunI	CAATTG	2 cut(s)	353, 452
Mva1269I	GAATGC	1 cut(s)	190
MvnI	CGCG	2 cut(s)	54, 387
MwoI	GCNNNNNNNGC	2 cut(s)	187, 384
NdeII	GATC	4 cut(s)	34, 43, 423, 430
NlaIII	CATG	3 cut(s)	265, 418, 541
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	2 cut(s)	68, 571
NspI	RCATGY	1 cut(s)	541
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	94
PciI	ACATGT	1 cut(s)	537
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	199, 527
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	283, 386
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	382, 599
PsrI	GAACNNNNNNTAC	2 cut(s)	239, 271
PstNI	CAGNNNCTG	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	8, 476, 649
SatI	GCNGC	2 cut(s)	282, 385
Sau3AI	GATC	4 cut(s)	34, 43, 423, 430
Sau96I	GGNCC	2 cut(s)	382, 599
SchI	GAGTC	1 cut(s)	575
SetI	ASST	8 cut(s)	70, 75, 134, 151, 234, 240, 525, 620
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	599
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	203, 603
SmoI	CTYRAG	2 cut(s)	203, 603
Sse9I	AATT	8 cut(s)	28, 168, 276, 321, 334, 353, 452, 635
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	385, 491
SspMI	CTAG	4 cut(s)	152, 173, 212, 239
StuI	AGGCCT	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	599
TaqI	TCGA	3 cut(s)	46, 204, 525
TasI	AATT	8 cut(s)	28, 168, 276, 321, 334, 353, 452, 635
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	199, 527
Tru1I	TTAA	3 cut(s)	8, 476, 649
Tru9I	TTAA	3 cut(s)	8, 476, 649
TseFI	GTSAC	2 cut(s)	68, 571
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	2 cut(s)	68, 571
TspDTI	ATGAA	3 cut(s)	176, 431, 483
TspGWI	ACGGA	1 cut(s)	560
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	4 cut(s)	28, 168, 321, 334
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	4 cut(s)	152, 173, 212, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.