Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Reverse (-)

9716057 .. 9718507

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAAGATTGCTTGTCATCATCTAAGAAGTCTCAAAAGATTGTTGGATTTGAAGGTCCATACCGGATGCTATATTGTTCGGGCAAGGGTGACAAAGCAGGAGTGGTGCGTGAGCTAGAGAAAGGGGTGGAGCCGAATTTAGCTGACTATAATAAGAGAACAGCTCTTCACTTGGCATCCTGTGAAGGCCACACTGAGATTGTTCTTCTGCTTCTTCAGAAAGGTGCTGATGTGAACTCCACAGATCGTTGGGGCCGCACTCCACTGTCAGAAGCTCGTAGCCTCAGTCAAGAGGCAATTTGCAAAATATTGGAGGCTAAGGGTGGCATAGATCCGGTAGGGCTTGATTCCCAGCTTCCATGCTATGAAGTTAATCACACTGAGGTGAACATGGATGAAGCAGCACTTATCGGAGAGGGATCATATGTTGAGATTTATTTAGTGAGGTGGCGCGGTACAGAAGTTGCTGCTAAAACAATCCGTTCCTCCATTGCTTCCGATCCGAAAGTGAAGAATTTCTTTATGAAGGAACTCGCTTTGTGGCAAAATCTTCGCCACCCTAATATTGTACAATTCCTTGGTGTTCTAAAGCACCCTGACCGCTTGATCTTCCTTACTGAGTATCTTTGCAATGGAAGTTTGCATGATATATTAAAAAGAAAAGGAAGGCTTGATCTGCAAACCGTACTTTCTTTTGCTCTAGATATCGCTAGAGGTATGAATTATCTTCATCAGCATAAACCGCACCCTATAATTCATCGGGGTTTGACACCAAGAAATGTTTTACAAGATGGAGCTGGGCGACTCAAGGTCACAGATTTTGGCTTAAGCAAAATTGCACAGGAAAATGATGTATCGGGTTATAAGATGACTGGACGAACAAGTTCATATCGTTATATGGCACCTGAGGTTTATCGTCGAGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

310

Amino Acids

34.69

Weight (kDa)

8.76

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	29 - 111	2.8e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	40 - 90	6.1e-07	Ankyrin repeats (many copies)
Ank	PF00023	52 - 83	1.9e-09	Ankyrin repeat
Pkinase	PF00069	135 - 306	3.4e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	136 - 307	8.5e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AccB1I	GGYRCC	1 cut(s)	901
AccII	CGCG	1 cut(s)	453
AciI	CCGC	4 cut(s)	256, 453, 601, 743
AclWI	GGATC	3 cut(s)	326, 427, 494
AcsI	RAATTY	2 cut(s)	136, 514
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	457, 570, 687
AflII	CTTAAG	1 cut(s)	826
AgsI	TTSAA	1 cut(s)	53
AhdI	GACNNNNNGTC	1 cut(s)	809
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	6 cut(s)	115, 143, 164, 275, 355, 797
AluI	AGCT	6 cut(s)	115, 143, 164, 275, 355, 797
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	326, 427, 494
AoxI	GGCC	2 cut(s)	187, 253
ApeKI	GCWGC	2 cut(s)	401, 467
ApoI	RAATTY	2 cut(s)	136, 514
Asp700I	GAANNNNTTC	2 cut(s)	515, 883
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	56, 253
AsuHPI	GGTGA	2 cut(s)	101, 397
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	906
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BanI	GGYRCC	1 cut(s)	901
BbvI	GCAGC	2 cut(s)	413, 454
BccI	CCATC	1 cut(s)	785
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	3 cut(s)	116, 701, 711
BfrI	CTTAAG	1 cut(s)	826
BisI	GCNGC	3 cut(s)	256, 402, 468
BlsI	GCNGC	3 cut(s)	257, 403, 469
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	809
BmgT120I	GGNCC	2 cut(s)	56, 253
BmiI	GGNNCC	3 cut(s)	132, 254, 903
BmsI	GCATC	2 cut(s)	57, 185
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	791
BsaJI	CCNNGG	1 cut(s)	577
BsaWI	WCCGGW	2 cut(s)	63, 334
Bse1I	ACTGG	1 cut(s)	877
Bse21I	CCTNAGG	1 cut(s)	906
Bse3DI	GCAATG	2 cut(s)	489, 637
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	72, 176, 400
BseMI	GCAATG	2 cut(s)	489, 637
BseMII	CTCAG	5 cut(s)	186, 298, 372, 609, 897
BseNI	ACTGG	1 cut(s)	877
BseXI	GCAGC	2 cut(s)	413, 454
BseYI	CCCAGC	2 cut(s)	351, 797
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	189, 255
BshNI	GGYRCC	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	64, 335
BsmAI	GTCTC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	189, 255
Bsp1407I	TGTACA	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
BspACI	CCGC	4 cut(s)	256, 453, 601, 743
BspANI	GGCC	2 cut(s)	189, 255
BspCNI	CTCAG	5 cut(s)	187, 297, 373, 610, 898
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	132, 254, 903
BspPI	GGATC	3 cut(s)	326, 427, 494
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	901
BspTI	CTTAAG	1 cut(s)	826
BsrDI	GCAATG	2 cut(s)	489, 637
BsrGI	TGTACA	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	877
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
BssT1I	CCWWGG	1 cut(s)	577
Bst4CI	ACNGT	2 cut(s)	267, 685
Bst6I	CTCTTC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	826
BstAUI	TGTACA	1 cut(s)	568
BstDEI	CTNAG	7 cut(s)	24, 195, 284, 318, 381, 618, 906
BstF5I	GGATG	3 cut(s)	72, 176, 400
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	6 cut(s)	247, 334, 422, 502, 609, 676
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	676, 742
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	413, 454
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	906
BsuRI	GGCC	2 cut(s)	189, 255
BtsCI	GGATG	3 cut(s)	72, 176, 400
BtsIMutI	CAGTG	3 cut(s)	192, 263, 378
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	56, 253
Csp6I	GTAC	3 cut(s)	456, 569, 686
CviAII	CATG	3 cut(s)	360, 391, 644
CviQI	GTAC	3 cut(s)	456, 569, 686
DdeI	CTNAG	7 cut(s)	24, 195, 284, 318, 381, 618, 906
DpnI	GATC	6 cut(s)	246, 333, 421, 501, 608, 675
DpnII	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
DriI	GACNNNNNGTC	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	906
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	3 cut(s)	363, 394, 647
FalI	AAGNNNNNCTT	6 cut(s)	390, 422, 503, 535, 654, 686
FatI	CATG	3 cut(s)	359, 390, 643
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	256, 402, 468
FokI	GGATG	3 cut(s)	79, 163, 407
Fsp4HI	GCNGC	3 cut(s)	256, 402, 468
FspBI	CTAG	3 cut(s)	116, 701, 711
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	3 cut(s)	256, 402, 468
GsaI	CCCAGC	2 cut(s)	355, 801
HaeIII	GGCC	2 cut(s)	189, 255
HapII	CCGG	2 cut(s)	64, 335
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	3 cut(s)	363, 394, 647
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HinfI	GANTC	3 cut(s)	347, 804, 923
HpaII	CCGG	2 cut(s)	64, 335
HphI	GGTGA	2 cut(s)	101, 397
Hpy166II	GTNNAC	2 cut(s)	235, 388
Hpy188I	TCNGA	5 cut(s)	219, 271, 413, 499, 504
Hpy188III	TCNNGA	3 cut(s)	290, 701, 920
Hpy8I	GTNNAC	2 cut(s)	235, 388
Hpy99I	CGWCG	1 cut(s)	921
HpyAV	CCTTC	4 cut(s)	47, 179, 520, 660
HpyCH4III	ACNGT	2 cut(s)	267, 685
HpyCH4V	TGCA	5 cut(s)	303, 630, 643, 679, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	676, 742
HpyF3I	CTNAG	7 cut(s)	24, 195, 284, 318, 381, 618, 906
Hsp92II	CATG	3 cut(s)	363, 394, 647
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	130, 794
Lsp1109I	GCAGC	2 cut(s)	413, 454
LweI	GCATC	2 cut(s)	57, 185
MaeI	CTAG	3 cut(s)	116, 701, 711
MaeIII	GTNAC	2 cut(s)	89, 811
MalI	GATC	6 cut(s)	246, 333, 421, 501, 608, 675
MboI	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
MboII	GAAGA	8 cut(s)	17, 158, 197, 206, 523, 542, 601, 719
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	7 cut(s)	136, 297, 514, 572, 721, 753, 834
MlyI	GAGTC	1 cut(s)	798
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	286, 293, 307, 376, 409, 438, 496, 707, 901
MroXI	GAANNNNTTC	2 cut(s)	515, 883
MseI	TTAA	3 cut(s)	372, 653, 827
MslI	CAYNNNNRTG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	826
MspI	CCGG	2 cut(s)	64, 335
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	676, 742
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
NlaIII	CATG	3 cut(s)	363, 394, 647
NlaIV	GGNNCC	3 cut(s)	132, 254, 903
NmuCI	GTSAC	2 cut(s)	89, 811
OliI	CACNNNNGTG	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	171
PdmI	GAANNNNTTC	2 cut(s)	515, 883
PfeI	GAWTC	2 cut(s)	347, 923
PkrI	GCNGC	3 cut(s)	257, 403, 469
PleI	GAGTC	1 cut(s)	798
PpsI	GAGTC	1 cut(s)	798
PsiI	TTATAA	1 cut(s)	864
PspFI	CCCAGC	2 cut(s)	351, 797
PspN4I	GGNNCC	3 cut(s)	132, 254, 903
PspPI	GGNCC	2 cut(s)	56, 253
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	3 cut(s)	457, 570, 687
RsaNI	GTAC	3 cut(s)	456, 569, 686
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	372, 653, 827
SatI	GCNGC	3 cut(s)	256, 402, 468
Sau3AI	GATC	6 cut(s)	244, 331, 419, 499, 606, 673
Sau96I	GGNCC	2 cut(s)	56, 253
SchI	GAGTC	1 cut(s)	798
SfaNI	GCATC	2 cut(s)	57, 185
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	806, 826
SmoI	CTYRAG	2 cut(s)	806, 826
Sse9I	AATT	7 cut(s)	136, 297, 514, 572, 721, 753, 834
SsiI	CCGC	4 cut(s)	256, 453, 601, 743
SspI	AATATT	2 cut(s)	309, 565
SspMI	CTAG	3 cut(s)	116, 701, 711
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	267, 685
TaqI	TCGA	1 cut(s)	919
TasI	AATT	7 cut(s)	136, 297, 514, 572, 721, 753, 834
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	347, 923
Tru1I	TTAA	3 cut(s)	372, 653, 827
Tru9I	TTAA	3 cut(s)	372, 653, 827
TscAI	CASTG	3 cut(s)	199, 270, 385
TseFI	GTSAC	2 cut(s)	89, 811
TseI	GCWGC	2 cut(s)	401, 467
Tsp45I	GTSAC	2 cut(s)	89, 811
TspDTI	ATGAA	7 cut(s)	381, 411, 539, 719, 734, 746, 876
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	3 cut(s)	199, 270, 385
Vha464I	CTTAAG	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	136, 514
XbaI	TCTAGA	1 cut(s)	700
XmnI	GAANNNNTTC	2 cut(s)	515, 883
XspI	CTAG	3 cut(s)	116, 701, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.