pycom01g10840

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014124
Physical Location & Seq
Reverse (-)
11612929 .. 11614831
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 825 bp
ATGCGCATCGGTGCATTTTCCGTTGAATCCTCAGAAGCATTCCTAACAGAAAAGCTGATCAAACCATCAAGGCTCCCAGAAGGAGATACCATACAGAAAATGTTGGAGTCGTGCGGCAGTTGTGTGTTGGATAAAGTTAAAACTGGGATATGGATTGCTGGAACGATGCAGACACTGGATGCAAGGCATATTGAGCTGTTCTTGAGCGAGGGGTACAAGAATGGAAGCTGGGAATACGAACTTATAGGTCGCCATGATGTCAACAAGCATGCCGATGGTGCTTGTGGGGCTATTTTCGATATGAAACACCTCAAGGAATCTTCAACATCTGTGTTTAATCTCAAGTCATGGGTGGGAAAACCAACAGACTGGCAACCAAAGGCTGTCATTACTCTACATGCAGTTGCAGTCAACACAAATCTGCAGAAGAATGAAGATAACATGGACATCTTACTCCTCGTCTCTCTCCTCTTCCTTCTCTTCCCCCACGTCTCTGCACTCAATGATTGCTCAGCTTCCAACTGTGGTGAAACCAGCTTCCCAATCCGATTCCCTTTCTGGTTAGTACCCAACCAACCCGAAAACTGCGGTTTCCTGGGCTTCAACGTGGACCGCAACAGCCTCGGGCTAAAAACGCTAAAACTTCCAAAACCCAGAGACATTTTCGTCCGAGGAATCAGCTGTCACACAAGAAATCCAACTTTTCAACCCCGAAAACTGCCTCCCTCGAAAGCTCCTTACTCTCAATCTCTCAGGCTCTCCTTTTGTTGCTCCCATGCACTAAAACTACACCTTCCTCAGCAAGTCAAGGTTCCCTCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.63

Weight (kDa)

8.82

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 170 - 230 1.1e-06 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 665
Acc16I TGCGCA 1 cut(s) 5
AciI CCGC 3 cut(s) 114, 588, 613
AfaI GTAC 2 cut(s) 215, 567
AgsI TTSAA 4 cut(s) 26, 324, 604, 707
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 7 cut(s) 55, 196, 228, 515, 537, 681, 734
AluI AGCT 7 cut(s) 55, 196, 228, 515, 537, 681, 734
Alw26I GTCTC 3 cut(s) 466, 496, 651
AlwNI CAGNNNCTG 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 623
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 610
AsuHPI GGTGA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 610
BbvCI CCTCAGC 1 cut(s) 798
BccI CCATC 2 cut(s) 73, 269
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 1 cut(s) 596
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 3 cut(s) 466, 496, 651
BfmI CTRYAG 1 cut(s) 422
BisI GCNGC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 610
BmeT110I CYCGRG 1 cut(s) 623
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 610
BmiI GGNNCC 2 cut(s) 74, 813
BmrFI CCNGG 1 cut(s) 596
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 15, 156, 169
BmuI ACTGGG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 798
Bpu1102I GCTNAGC 1 cut(s) 511
BpuEI CTTGAG 3 cut(s) 223, 296, 326
BsaJI CCNNGG 3 cut(s) 595, 622, 670
Bse1I ACTGG 3 cut(s) 148, 180, 374
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 3 cut(s) 595, 622, 670
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 4 cut(s) 45, 525, 766, 812
BseNI ACTGG 3 cut(s) 148, 180, 374
BseRI GAGGAG 2 cut(s) 446, 458
BseYI CCCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 480
BsiHKCI CYCGRG 1 cut(s) 623
BsmAI GTCTC 3 cut(s) 466, 496, 651
BsmBI CGTCTC 2 cut(s) 466, 496
BsmI GAATGC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 623
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 511
BspACI CCGC 3 cut(s) 114, 588, 613
BspCNI CTCAG 4 cut(s) 44, 524, 765, 811
BspLI GGNNCC 2 cut(s) 74, 813
BspMAI CTGCAG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 148, 180, 374
BssECI CCNNGG 3 cut(s) 595, 622, 670
BssMI GATC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 2 cut(s) 476, 485
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 4 cut(s) 31, 511, 752, 798
BstF5I GGATG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 3 cut(s) 466, 496, 651
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 193, 278, 287, 634
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 2 cut(s) 272, 401
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 214, 566
CviAII CATG 6 cut(s) 254, 269, 348, 398, 442, 776
CviQI GTAC 2 cut(s) 214, 566
DdeI CTNAG 4 cut(s) 31, 511, 752, 798
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 665
DseDI GACNNNNNNGTC 1 cut(s) 665
Eam1104I CTCTTC 2 cut(s) 476, 485
EarI CTCTTC 2 cut(s) 476, 485
Eco47I GGWCC 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 594
Esp3I CGTCTC 2 cut(s) 466, 496
FaeI CATG 6 cut(s) 257, 272, 351, 401, 445, 779
FatI CATG 6 cut(s) 253, 268, 347, 397, 441, 775
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 115
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 257, 272, 351, 401, 445, 779
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 2 cut(s) 262, 412
HindII GTYRAC 2 cut(s) 262, 412
HinfI GANTC 5 cut(s) 26, 107, 317, 549, 675
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 262, 412, 610
Hpy188I TCNGA 3 cut(s) 34, 548, 671
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 3 cut(s) 262, 412, 610
HpyAV CCTTC 3 cut(s) 74, 485, 803
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 489, 606
HpyCH4V TGCA 8 cut(s) 14, 169, 182, 401, 407, 424, 497, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 278, 287, 634
HpyF3I CTNAG 4 cut(s) 31, 511, 752, 798
HpySE526I ACGT 2 cut(s) 489, 606
Hsp92II CATG 6 cut(s) 257, 272, 351, 401, 445, 779
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 78, 739, 776
LweI GCATC 3 cut(s) 15, 156, 169
MaeII ACGT 2 cut(s) 489, 606
MaeIII GTNAC 1 cut(s) 683
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 5 cut(s) 312, 439, 446, 463, 472
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 4 cut(s) 84, 108, 543, 722
MseI TTAA 2 cut(s) 138, 336
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 681
MspR9I CCNGG 1 cut(s) 596
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 596
MwoI GCNNNNNNNGC 4 cut(s) 193, 278, 287, 634
NdeII GATC 1 cut(s) 57
NlaIII CATG 6 cut(s) 257, 272, 351, 401, 445, 779
NlaIV GGNNCC 2 cut(s) 74, 813
NmuCI GTSAC 1 cut(s) 683
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 2 cut(s) 272, 401
PaeI GCATGC 1 cut(s) 272
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 26, 317, 549, 675
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 74, 813
PspPI GGNCC 1 cut(s) 610
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 681
RsaI GTAC 2 cut(s) 215, 567
RsaNI GTAC 2 cut(s) 214, 566
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 138, 336
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 610
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 596
SfaNI GCATC 3 cut(s) 15, 156, 169
SfcI CTRYAG 1 cut(s) 422
SinI GGWCC 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 3 cut(s) 202, 311, 341
SmoI CTYRAG 3 cut(s) 202, 311, 341
SphI GCATGC 1 cut(s) 272
SsiI CCGC 3 cut(s) 114, 588, 613
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 492, 609
TaqI TCGA 2 cut(s) 297, 728
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 4 cut(s) 26, 317, 549, 675
Tru1I TTAA 2 cut(s) 138, 336
Tru9I TTAA 2 cut(s) 138, 336
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 2 cut(s) 317, 447
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 610
XceI RCATGY 2 cut(s) 272, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.