pycom01g11160

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0003819
Physical Location & Seq
Reverse (-)
12047921 .. 12050467
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGTCAAATTCAAATTTTAAGCTGGATGGAAATACCCCAACTGTTACCTGGGCAGATCCAAAAAGTACTCCTGATCATACTGCTGCAGCTCAGTCCCAGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAACACTAGCACTGAGAAGCTGAAGGAACTATTCCAGCACCATGGTGAAGTGACAAAAGTGGTTATGCCACCTGGAAAAGGTGGTCAAGGAAAACGAGATTTTGGCTTCGTTCATTTTGCTGAAAGGGCAAGTGCACTGAAGGCTGTCAAAGACACTGAGAAATATGAAATTGATGGTCATCCACTGGAAGTTGTCCTTGCGAAGCCTCAGACTGAGAAGAAACCTGATGGGGCTTATCCGTACAATGCAGGGCCTCATGCAAGCCACCTTGCACGCCCAGGGTATGGTGGTGGTTATGGCGGAAATCCATACGGCTCAGTGGGGGCTGGATATGGTGTTGCTGCAGGCTTTCAGCAGCCAATGATATATGGTAGAGGACCAATGCCTGCAGGAATGCACATGGTGCCTATGGTTTTACCGGATGGTCGAATTGGCTATGTGCTTCAGCAGCCTGGTGTACAGATGCCAACTCCTCGACCTCGAAGAGCAGATCGGAGCAATGGTCCAGGCAGTGGACGAGGAAGTGGCGGCAGTGATGAAGGCAACCGTGGTGGCAGAAGGTACCGACCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

25.11

Weight (kDa)

9.62

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 106 2.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 2 cut(s) 535, 693
AccB7I CCANNNNNTGG 2 cut(s) 416, 644
AciI CCGC 2 cut(s) 432, 660
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 2 cut(s) 7, 13
AcuI CTGAAG 3 cut(s) 173, 290, 560
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 4 cut(s) 67, 374, 591, 695
AfiI CCNNNNNNNGG 4 cut(s) 103, 209, 416, 644
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 6 cut(s) 47, 96, 202, 409, 583, 637
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 3 cut(s) 22, 89, 151
AluI AGCT 3 cut(s) 22, 89, 151
Alw21I GWGCWC 1 cut(s) 268
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 383
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 5 cut(s) 83, 86, 473, 487, 580
ApoI RAATTY 2 cut(s) 7, 13
Asp718I GGTACC 1 cut(s) 693
AspS9I GGNCC 3 cut(s) 383, 509, 635
AsuHPI GGTGA 2 cut(s) 112, 188
AvaII GGWCC 2 cut(s) 509, 635
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 2 cut(s) 535, 693
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 5 cut(s) 70, 98, 460, 499, 592
BccI CCATC 4 cut(s) 20, 299, 353, 548
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 6 cut(s) 49, 98, 204, 411, 585, 639
BclI TGATCA 1 cut(s) 73
BfaI CTAG 2 cut(s) 138, 706
BfmI CTRYAG 3 cut(s) 84, 474, 519
BisI GCNGC 6 cut(s) 84, 87, 474, 488, 581, 661
BlsI GCNGC 6 cut(s) 85, 88, 475, 489, 582, 662
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 6 cut(s) 49, 98, 204, 411, 585, 639
Bme18I GGWCC 2 cut(s) 509, 635
BmgT120I GGNCC 3 cut(s) 383, 509, 635
BmiI GGNNCC 2 cut(s) 537, 695
BmrFI CCNGG 6 cut(s) 49, 98, 204, 411, 585, 639
BmsI GCATC 1 cut(s) 585
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 6 cut(s) 48, 96, 172, 409, 410, 679
BsaWI WCCGGW 1 cut(s) 550
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 209, 416, 644
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 6 cut(s) 49, 98, 204, 411, 585, 639
BseDI CCNNGG 6 cut(s) 48, 96, 172, 409, 410, 679
BseGI GGATG 3 cut(s) 31, 310, 559
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 103, 209, 416, 644
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 7 cut(s) 104, 120, 135, 279, 336, 353, 462
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 5 cut(s) 70, 98, 460, 499, 592
BshFI GGCC 1 cut(s) 385
BshNI GGYRCC 2 cut(s) 535, 693
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 4 cut(s) 103, 209, 416, 644
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 268
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 3 cut(s) 55, 73, 622
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 2 cut(s) 432, 660
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 7 cut(s) 103, 121, 136, 280, 337, 352, 461
BspLI GGNNCC 2 cut(s) 537, 695
BspMAI CTGCAG 3 cut(s) 88, 478, 523
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 610
BspT107I GGYRCC 2 cut(s) 535, 693
BsrDI GCAATG 1 cut(s) 637
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 6 cut(s) 48, 96, 172, 409, 410, 679
BssMI GATC 3 cut(s) 55, 73, 622
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 6 cut(s) 49, 98, 204, 411, 585, 639
Bst4CI ACNGT 2 cut(s) 43, 680
Bst6I CTCTTC 1 cut(s) 610
BstAPI GCANNNNNTGC 1 cut(s) 535
BstAUI TGTACA 1 cut(s) 589
BstC8I GCNNGC 4 cut(s) 394, 406, 478, 519
BstDEI CTNAG 7 cut(s) 90, 129, 144, 288, 339, 345, 448
BstDSI CCRYGG 2 cut(s) 172, 679
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 31, 310, 559
BstKTI GATC 3 cut(s) 58, 76, 625
BstMBI GATC 3 cut(s) 55, 73, 622
BstMWI GCNNNNNNNGC 4 cut(s) 257, 272, 535, 580
BstNI CCWGG 6 cut(s) 49, 98, 204, 411, 585, 639
BstSCI CCNGG 6 cut(s) 47, 96, 202, 409, 583, 637
BstSFI CTRYAG 3 cut(s) 84, 474, 519
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 5 cut(s) 70, 98, 460, 499, 592
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 385
BtgI CCRYGG 2 cut(s) 172, 679
BtsCI GGATG 3 cut(s) 31, 310, 559
BtsI GCAGTG 2 cut(s) 649, 670
BtsIMutI CAGTG 7 cut(s) 141, 266, 285, 314, 456, 649, 670
Cac8I GCNNGC 4 cut(s) 394, 406, 478, 519
Cfr13I GGNCC 3 cut(s) 383, 509, 635
Csp6I GTAC 4 cut(s) 66, 373, 590, 694
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 3 cut(s) 173, 389, 532
CviQI GTAC 4 cut(s) 66, 373, 590, 694
DdeI CTNAG 7 cut(s) 90, 129, 144, 288, 339, 345, 448
DpnI GATC 3 cut(s) 57, 75, 624
DpnII GATC 3 cut(s) 55, 73, 622
DraIII CACNNNGTG 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
EciI GGCGGA 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 509, 635
Eco57I CTGAAG 3 cut(s) 173, 290, 560
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 6 cut(s) 47, 96, 202, 409, 583, 637
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 176, 392, 535
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 79
FatI CATG 3 cut(s) 172, 388, 531
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 6 cut(s) 84, 87, 474, 488, 581, 661
FokI GGATG 3 cut(s) 38, 297, 566
Fsp4HI GCNGC 6 cut(s) 84, 87, 474, 488, 581, 661
FspBI CTAG 2 cut(s) 138, 706
GluI GCNGC 6 cut(s) 84, 87, 474, 488, 581, 661
HaeIII GGCC 1 cut(s) 385
HapII CCGG 1 cut(s) 551
Hin1II CATG 3 cut(s) 176, 392, 535
HpaII CCGG 1 cut(s) 551
HphI GGTGA 2 cut(s) 112, 188
Hpy166II GTNNAC 3 cut(s) 266, 590, 647
Hpy188I TCNGA 2 cut(s) 342, 627
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 3 cut(s) 266, 590, 647
HpyAV CCTTC 5 cut(s) 97, 148, 265, 665, 684
HpyCH4III ACNGT 2 cut(s) 43, 680
HpyCH4V TGCA 8 cut(s) 86, 266, 380, 392, 404, 476, 521, 529
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 272, 535, 580
HpyF3I CTNAG 7 cut(s) 90, 129, 144, 288, 339, 345, 448
Hsp92II CATG 3 cut(s) 176, 392, 535
KpnI GGTACC 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 3 cut(s) 55, 73, 622
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 627
Lsp1109I GCAGC 5 cut(s) 70, 98, 460, 499, 592
LweI GCATC 1 cut(s) 585
MaeI CTAG 2 cut(s) 138, 706
MaeIII GTNAC 2 cut(s) 43, 181
MalI GATC 3 cut(s) 57, 75, 624
MboI GATC 3 cut(s) 55, 73, 622
MboII GAAGA 2 cut(s) 361, 627
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 4 cut(s) 7, 13, 300, 561
MnlI CCTC 6 cut(s) 348, 396, 500, 615, 621, 644
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 6 cut(s) 49, 98, 204, 411, 585, 639
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 6 cut(s) 49, 98, 204, 411, 585, 639
MwoI GCNNNNNNNGC 4 cut(s) 257, 272, 535, 580
NcoI CCATGG 1 cut(s) 172
NdeII GATC 3 cut(s) 55, 73, 622
NlaIII CATG 3 cut(s) 176, 392, 535
NlaIV GGNNCC 2 cut(s) 537, 695
NmuCI GTSAC 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 174
PasI CCCWGGG 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 610
PctI GAATGC 1 cut(s) 531
PflMI CCANNNNNTGG 2 cut(s) 416, 644
PkrI GCNGC 6 cut(s) 85, 88, 475, 489, 582, 662
Psp6I CCWGG 6 cut(s) 47, 96, 202, 409, 583, 637
PspGI CCWGG 6 cut(s) 47, 96, 202, 409, 583, 637
PspN4I GGNNCC 2 cut(s) 537, 695
PspPI GGNCC 3 cut(s) 383, 509, 635
PstI CTGCAG 3 cut(s) 88, 478, 523
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 4 cut(s) 67, 374, 591, 695
RsaNI GTAC 4 cut(s) 66, 373, 590, 694
RseI CAYNNNNRTG 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 6 cut(s) 84, 87, 474, 488, 581, 661
Sau3AI GATC 3 cut(s) 55, 73, 622
Sau96I GGNCC 3 cut(s) 383, 509, 635
SbfI CCTGCAGG 1 cut(s) 523
ScaI AGTACT 1 cut(s) 67
ScrFI CCNGG 6 cut(s) 49, 98, 204, 411, 585, 639
SdaI CCTGCAGG 1 cut(s) 523
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 1 cut(s) 585
SfcI CTRYAG 3 cut(s) 84, 474, 519
SinI GGWCC 2 cut(s) 509, 635
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse8387I CCTGCAGG 1 cut(s) 523
Sse9I AATT 4 cut(s) 7, 13, 300, 561
SsiI CCGC 2 cut(s) 432, 660
SspMI CTAG 2 cut(s) 138, 706
StyD4I CCNGG 6 cut(s) 47, 96, 202, 409, 583, 637
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 43, 680
TaqI TCGA 3 cut(s) 559, 607, 613
TasI AATT 4 cut(s) 7, 13, 300, 561
TatI WGTACW 2 cut(s) 65, 589
TauI GCSGC 1 cut(s) 663
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 7 cut(s) 148, 273, 292, 321, 456, 649, 670
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 5 cut(s) 83, 86, 473, 487, 580
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 233, 312, 684
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 7 cut(s) 148, 273, 292, 321, 456, 649, 670
Van91I CCANNNNNTGG 2 cut(s) 416, 644
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 2 cut(s) 509, 635
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 2 cut(s) 7, 13
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
XspI CTAG 2 cut(s) 138, 706
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.