Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007050

Physical Location & Seq

Genomic Coordinates Reverse (-)

13815292 .. 13819343

Gene Structure 4052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGGAACCGGGAAATAACCAAACCGGCAACGGAAACGGCTCCCTGGAGTCGTTTTGCGTAGGCCATGAGAAGGTACTTGCGACACATGACCCATTGAACTGGGGGATGGCAGCTGAAGCAATGAAAGGGAGCCATCTTGACGAGTTCAAACGGATGGTCAACGATTACAGGAAGCCAGTGGTGAAGCTTGGTGGGGAGAGCCTGACGGTGGCTCAGGTTGCTGCAATTGCCAACCACGACGGTGCCAAGGTGGAGCTGTCGGAGGAGAAAAGGGCTGGGGTGAAGGCCAGCAGTGATTGGGTTATGGATAGCATGAGCAAAGGCACAGACAGCTATGGTGTGACCACTGGTTTTGGTGCAACCTCACATAGGAGAACCAAGCAAGGTGGAGCTCTTCAGAGGGAGCTAATTAGATTTTTGAATGCTGGAATCTTCGGCAGCACCACAGAAGGGACCCACATTCTGCCTCACACAGCAACAAGAGCAGCAATGCTGGTGAGGATCAACACCCTCCTCCAGGGCTACTCCGGAATCAGGTTCGAAATCCTGGAAGCCATAACCAAGTTCCTCAACAACAATGTCACCCCATGCCTCCCCCTTAGGGGCACAATCACCGCCTCCGGGGACTTGGTTCCGCTCTCGTACATTGCCGGGCTTTTGATCGGTAGGCCTAACTCCAAGTCCACCGGACCCAATGGCGAAACCTTAACCGCTTCTGATGCCTTCAAGCTAGCTAGGATTGATAGTGGGTTCTTTGAGTTGCAACCAAAAGAAGGGCTTGCCTTGGTCAATGGAACAGCAGTTGGGTCTGGTTTGGCTTCTATGGTTCTGTTTGACGCTAACACACAAGCGCTTTTATCAGAAGTGCTTTCGGCAATTTTCGCTGAAGTTATGCAAGGGAAACCTGAATTCACAGATCACTTGACTCACAAGTTAAAACATCACCCTGGCCAAATTGAAGCTGCAGCAATAATGGAACACATTTTGGCTGGAAGTGATTATGTAAAAGCAGCTGAGAAAGTGCATGAGATGGACCCTCTCCAGAAGCCAAAACAGGACAGGTATGCTCTTAGAACATCTCCCCAATGGTTGGGTCCACAGATTGAGGTGATCAGAGCAGCAACAAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCTTTAATCGATGTCTCAAGAAACAAGGCATTACATGGCGGAAACTTTCAGGGCACACCGATTGGTGTTGCCATGGACAACACCAGATTAGCCATTGCTGCAATTGGAAAACTCATGTTTGCACAGTTCTCTGAGCTTGTCAATGACTTTTACAACAATGGTTTGCCTTCAAATCTCACAGCAAGCAGCAATCCCAGCTTGGATTATGGGTTCAAAGGTGCGGAAATCGCCATGGCGTCCTACTGCTCGGAGCTCCAATTCCTTGGCAACCCTGTCACAAACCATGTCCAGAGTGCAGAGCAACACAACCAAGATGTCAACTCCTTGGGATTGATTTCTTCGCGAAAAACCACCGAGGCGGTCGACATATTGAAGCTCATGTCATCCACATTCCTAGTTGCACTGTGCCAAGCTATTGATTTAAGGCATTTGGAGGAGAATTTGAAGAGCACAGTGAAGACCACCGTGAGTCAGGTTGCCAAGAGAGTCCTCACCGTGGGCTTCAATGGCGAGCTTCACCCTTCTCGGTTCTGCGAAAAAGACCTCCTCAAGGTCGTCGACCGTGAGTATGTTTTTGCCTACATCGATGATCCTTGCAGTGCTACATATCCACTGATGCAGAAACTGAGGCATGTACTAGTTGAGCATGCATTGAGCAATGGTGACAAGGAGAGGAGTACAAGCACTTCAATTTTCCAAAAGATTGCAACTTTTGAGGAGGAACTGAAGACCCTATTGCCGAAAGAGGTCGAAACCACCCGGGCCGAGTACGAGAACGGGAAAACAGCAATCCCAAACAGGATCAAAGAATGCAGGTCTTACCCATTGTACAAGTTTGTGAGGGAAGAGTTGGGGACTGATCTATTGACTGGTGAGAAAGTGAGATCACCAGGGGAGGAATGTGACAAGGTTTTCAGTGCTATGTGTGCTGGGAAGTTGATCGATCCTCTGCTGGATTGCTTGAAGGAGTGGAATGGTGCTCCTCTTCCTATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016598 GO:0016829 GO:0016840 GO:0016841 GO:0019438 GO:0019538 GO:0019748 GO:0019941 GO:0030163 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044550 GO:0045548 GO:0046677 GO:0046898 GO:0050896 GO:0051603 GO:0060992 GO:0071704 GO:0097305 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko01100 ko01110 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

Lyase_aromatic

Protein Analysis

721

Amino Acids

78.57

Weight (kDa)

6.16

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10340 AT5G04230 AT5G04230
fragaria_vesca	FvH4_7g19130
malus_domestica	MD01G1106900.v1.1 MD07G1172700.v1.1
prunus_persica	Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1
pyrus_communis	pycom01g13360 pycom07g16720
rosa_chinensis	RchiOBHm_Chr1g0363011
rosa_laevigata	RLG00000027602
rosa_multiflora	Rmu_co8466277.1_g000001 Rmu_sc0000174.1_g000003 Rmu_ssc0000356.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293550
rosa_rugosa	Rorug01G0303500 Rorug04G0330100 Rorug04G0330200
rosa_samantha	Rh1AG312500 Rh1BG275900 Rh1CG292700 Rh1DG306500
rosa_wichuraiana	Rw1G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1968
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	1090
AccBSI	CCGCTC	1 cut(s)	637
AccI	GTMKAC	2 cut(s)	1527, 1722
AccII	CGCG	1 cut(s)	1507
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	6 cut(s)	615, 635, 711, 1203, 1385, 1523
AclWI	GGATC	4 cut(s)	509, 1748, 1973, 2102
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	2 cut(s)	908, 1603
AcuI	CTGAAG	4 cut(s)	135, 380, 906, 1910
AcyI	GRCGYC	1 cut(s)	1400
AfaI	GTAC	6 cut(s)	75, 644, 1800, 1843, 1934, 1994
AfeI	AGCGCT	1 cut(s)	852
AhlI	ACTAGT	1 cut(s)	1801
AjnI	CCWGG	5 cut(s)	42, 516, 546, 946, 2053
AleI	CACNNNNGTG	1 cut(s)	240
AloI	GAACNNNNNNTCC	2 cut(s)	1358, 1390
Alw21I	GWGCWC	4 cut(s)	394, 1419, 1616, 2146
Alw26I	GTCTC	1 cut(s)	1183
AlwI	GGATC	4 cut(s)	509, 1748, 1973, 2102
AlwNI	CAGNNNCTG	1 cut(s)	1789
Ama87I	CYCGRG	1 cut(s)	1923
Aor13HI	TCCGGA	1 cut(s)	527
Aor51HI	AGCGCT	1 cut(s)	852
AoxI	GGCC	5 cut(s)	61, 285, 668, 949, 1926
ApoI	RAATTY	2 cut(s)	908, 1603
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	5 cut(s)	453, 689, 1033, 1094, 1926
AsuC2I	CCSGG	5 cut(s)	9, 622, 652, 1924, 1925
AsuII	TTCGAA	1 cut(s)	540
AsuNHI	GCTAGC	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	1923
AvaII	GGWCC	4 cut(s)	453, 689, 1033, 1094
AxyI	CCTNAGG	1 cut(s)	599
BaeGI	GKGCMC	2 cut(s)	608, 1220
BalI	TGGCCA	1 cut(s)	951
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	394, 1419
BarI	GAAGNNNNNNTAC	2 cut(s)	1834, 1866
BbsI	GAAGAC	2 cut(s)	1628, 1898
Bbv12I	GWGCWC	4 cut(s)	394, 1419, 1616, 2146
BccI	CCATC	4 cut(s)	100, 141, 148, 1024
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	5 cut(s)	44, 518, 548, 948, 2055
BclI	TGATCA	1 cut(s)	1110
BcnI	CCSGG	5 cut(s)	9, 622, 652, 1924, 1925
BcoDI	GTCTC	1 cut(s)	1183
BcuI	ACTAGT	1 cut(s)	1801
BfaI	CTAG	4 cut(s)	731, 735, 1559, 1802
BfmI	CTRYAG	1 cut(s)	963
BfoI	RGCGCY	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	1968
Bme18I	GGWCC	4 cut(s)	453, 689, 1033, 1094
BmeT110I	CYCGRG	1 cut(s)	1923
BmgT120I	GGNCC	5 cut(s)	453, 689, 1033, 1094, 1926
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	709, 1770
BmtI	GCTAGC	1 cut(s)	734
BmuI	ACTGGG	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	1628, 1898
BplI	GAGNNNNNCTC	2 cut(s)	1133, 1165
BpmI	CTGGAG	3 cut(s)	65, 500, 1025
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	2 cut(s)	1165, 1697
BpuMI	CCSGG	5 cut(s)	9, 622, 652, 1924, 1925
Bsa29I	ATCGAT	3 cut(s)	1173, 1749, 2106
BsaHI	GRCGYC	1 cut(s)	1400
BsaWI	WCCGGW	2 cut(s)	527, 686
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	4 cut(s)	104, 176, 352, 2038
Bse21I	CCTNAGG	1 cut(s)	599
Bse3DI	GCAATG	5 cut(s)	126, 495, 645, 1257, 1828
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	5 cut(s)	44, 518, 548, 948, 2055
BseCI	ATCGAT	3 cut(s)	1173, 1749, 2106
BseGI	GGATG	3 cut(s)	111, 159, 1547
BseMI	GCAATG	5 cut(s)	126, 495, 645, 1257, 1828
BseMII	CTCAG	5 cut(s)	227, 1005, 1164, 1287, 1781
BseNI	ACTGG	4 cut(s)	104, 176, 352, 2038
BseRI	GAGGAG	7 cut(s)	278, 503, 1613, 1700, 1852, 1895, 2136
BseSI	GKGCMC	2 cut(s)	608, 1220
BseYI	CCCAGC	3 cut(s)	275, 1358, 2093
BsgI	GTGCAG	1 cut(s)	1479
Bsh1236I	CGCG	1 cut(s)	1507
Bsh1285I	CGRYCG	2 cut(s)	1527, 1726
BshFI	GGCC	5 cut(s)	63, 287, 670, 951, 1928
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	3 cut(s)	1173, 1749, 2106
BsiEI	CGRYCG	2 cut(s)	1527, 1726
BsiHKAI	GWGCWC	4 cut(s)	394, 1419, 1616, 2146
BsiHKCI	CYCGRG	1 cut(s)	1923
BsiSI	CCGG	7 cut(s)	8, 24, 528, 621, 651, 687, 1924
BslFI	GGGAC	3 cut(s)	466, 638, 2032
BsmAI	GTCTC	1 cut(s)	1183
BsmFI	GGGAC	3 cut(s)	466, 638, 2032
BsmI	GAATGC	2 cut(s)	427, 1979
BsnI	GGCC	5 cut(s)	63, 287, 670, 951, 1928
BsoBI	CYCGRG	1 cut(s)	1923
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	6 cut(s)	394, 608, 1220, 1419, 1616, 2146
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	1992
Bsp19I	CCATGG	2 cut(s)	1236, 1395
Bsp68I	TCGCGA	1 cut(s)	1507
BspACI	CCGC	6 cut(s)	615, 635, 711, 1203, 1385, 1523
BspANI	GGCC	5 cut(s)	63, 287, 670, 951, 1928
BspCNI	CTCAG	5 cut(s)	226, 1006, 1163, 1288, 1782
BspDI	ATCGAT	3 cut(s)	1173, 1749, 2106
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	1 cut(s)	1507
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	1 cut(s)	1968
BspOI	GCTAGC	1 cut(s)	734
BspPI	GGATC	4 cut(s)	509, 1748, 1973, 2102
BspQI	GCTCTTC	2 cut(s)	399, 1604
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	5 cut(s)	126, 495, 645, 1257, 1828
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	1992
BsrI	ACTGG	4 cut(s)	104, 176, 352, 2038
BssAI	RCCGGY	1 cut(s)	23
BssNI	GRCGYC	1 cut(s)	1400
BssT1I	CCWWGG	6 cut(s)	246, 783, 1236, 1395, 1426, 1488
Bst2UI	CCWGG	5 cut(s)	44, 518, 548, 948, 2055
Bst4CI	ACNGT	8 cut(s)	208, 242, 1290, 1569, 1618, 1630, 1660, 1727
Bst6I	CTCTTC	4 cut(s)	399, 1604, 2004, 2154
BstACI	GRCGYC	1 cut(s)	1400
BstAUI	TGTACA	1 cut(s)	1992
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	6 cut(s)	289, 732, 780, 1348, 1676, 1812
BstDEI	CTNAG	7 cut(s)	213, 599, 1014, 1070, 1150, 1296, 1790
BstDSI	CCRYGG	3 cut(s)	1236, 1395, 1659
BstENI	CCTNNNNNAGG	3 cut(s)	367, 515, 1712
BstF5I	GGATG	3 cut(s)	111, 159, 1547
BstFNI	CGCG	1 cut(s)	1507
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstMAI	GTCTC	1 cut(s)	1183
BstMCI	CGRYCG	2 cut(s)	1527, 1726
BstNI	CCWGG	5 cut(s)	44, 518, 548, 948, 2055
BstNSI	RCATGY	2 cut(s)	1799, 1814
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	2 cut(s)	608, 1220
BstUI	CGCG	1 cut(s)	1507
BstV2I	GAAGAC	2 cut(s)	1628, 1898
BstXI	CCANNNNNNTGG	2 cut(s)	99, 1427
Bsu15I	ATCGAT	3 cut(s)	1173, 1749, 2106
Bsu36I	CCTNAGG	1 cut(s)	599
BsuRI	GGCC	5 cut(s)	63, 287, 670, 951, 1928
BsuTUI	ATCGAT	3 cut(s)	1173, 1749, 2106
BtgI	CCRYGG	3 cut(s)	1236, 1395, 1659
BtsCI	GGATG	3 cut(s)	111, 159, 1547
BtsI	GCAGTG	2 cut(s)	298, 1768
BtsIMutI	CAGTG	9 cut(s)	183, 298, 345, 1158, 1565, 1623, 1768, 1775, 2086
BtuMI	TCGCGA	1 cut(s)	1507
BveI	ACCTGC	1 cut(s)	1968
Cac8I	GCNNGC	6 cut(s)	289, 732, 780, 1348, 1676, 1812
CaiI	CAGNNNCTG	1 cut(s)	1789
CfoI	GCGC	1 cut(s)	853
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	5 cut(s)	453, 689, 1033, 1094, 1926
Cfr9I	CCCGGG	1 cut(s)	1923
ClaI	ATCGAT	3 cut(s)	1173, 1749, 2106
CseI	GACGC	2 cut(s)	845, 1389
Csp6I	GTAC	6 cut(s)	74, 643, 1799, 1842, 1933, 1993
CspCI	CAANNNNNGTGG	4 cut(s)	334, 367, 369, 402
CviQI	GTAC	6 cut(s)	74, 643, 1799, 1842, 1933, 1993
DdeI	CTNAG	7 cut(s)	213, 599, 1014, 1070, 1150, 1296, 1790
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	4 cut(s)	399, 1604, 2004, 2154
EarI	CTCTTC	4 cut(s)	399, 1604, 2004, 2154
EciI	GGCGGA	1 cut(s)	1218
Ecl136II	GAGCTC	2 cut(s)	392, 1417
Eco130I	CCWWGG	6 cut(s)	246, 783, 1236, 1395, 1426, 1488
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	394, 1419
Eco47I	GGWCC	4 cut(s)	453, 689, 1033, 1094
Eco47III	AGCGCT	1 cut(s)	852
Eco53kI	GAGCTC	2 cut(s)	392, 1417
Eco57I	CTGAAG	4 cut(s)	135, 380, 906, 1910
Eco81I	CCTNAGG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	1923
EcoICRI	GAGCTC	2 cut(s)	392, 1417
EcoNI	CCTNNNNNAGG	3 cut(s)	367, 515, 1712
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	5 cut(s)	42, 516, 546, 946, 2053
EcoT14I	CCWWGG	6 cut(s)	246, 783, 1236, 1395, 1426, 1488
EcoT22I	ATGCAT	1 cut(s)	1816
EcoT38I	GRGCYC	2 cut(s)	394, 1419
ErhI	CCWWGG	6 cut(s)	246, 783, 1236, 1395, 1426, 1488
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	3 cut(s)	466, 638, 2032
FbaI	TGATCA	1 cut(s)	1110
FblI	GTMKAC	2 cut(s)	1527, 1722
FokI	GGATG	3 cut(s)	118, 166, 1534
FriOI	GRGCYC	2 cut(s)	394, 1419
FspBI	CTAG	4 cut(s)	731, 735, 1559, 1802
GlaI	GCGC	1 cut(s)	852
GsaI	CCCAGC	3 cut(s)	279, 1362, 2097
GsuI	CTGGAG	3 cut(s)	65, 500, 1025
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	5 cut(s)	63, 287, 670, 951, 1928
HapII	CCGG	7 cut(s)	8, 24, 528, 621, 651, 687, 1924
HgaI	GACGC	2 cut(s)	845, 1389
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	1 cut(s)	1400
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	4 cut(s)	160, 1483, 1528, 1723
HindII	GTYRAC	4 cut(s)	160, 1483, 1528, 1723
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	47, 429, 531, 925, 1633, 1650
HpaII	CCGG	7 cut(s)	8, 24, 528, 621, 651, 687, 1924
Hpy166II	GTNNAC	6 cut(s)	160, 684, 1097, 1483, 1528, 1723
Hpy188I	TCNGA	7 cut(s)	262, 399, 718, 862, 1115, 1297, 1414
Hpy188III	TCNNGA	6 cut(s)	137, 528, 1042, 1182, 1453, 1506
Hpy8I	GTNNAC	6 cut(s)	160, 684, 1097, 1483, 1528, 1723
Hpy99I	CGWCG	2 cut(s)	242, 1724
HpyAV	CCTTC	8 cut(s)	64, 277, 443, 733, 767, 1341, 1695, 2122
HpyCH4III	ACNGT	8 cut(s)	208, 242, 1290, 1569, 1618, 1630, 1660, 1727
HpyF3I	CTNAG	7 cut(s)	213, 599, 1014, 1070, 1150, 1296, 1790
Hsp92I	GRCGYC	1 cut(s)	1400
HspAI	GCGC	1 cut(s)	851
KflI	GGGWCCC	1 cut(s)	453
Kpn2I	TCCGGA	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	1110
LguI	GCTCTTC	2 cut(s)	399, 1604
LmnI	GCTCC	8 cut(s)	44, 129, 253, 389, 403, 1414, 1422, 2149
LweI	GCATC	2 cut(s)	709, 1770
MaeI	CTAG	4 cut(s)	731, 735, 1559, 1802
MaeIII	GTNAC	5 cut(s)	340, 580, 1438, 1826, 2066
MbiI	CCGCTC	1 cut(s)	637
MboII	GAAGA	8 cut(s)	386, 424, 1494, 1621, 1633, 1903, 2021, 2141
MfeI	CAATTG	2 cut(s)	225, 1266
MhlI	GDGCHC	6 cut(s)	394, 608, 1220, 1419, 1616, 2146
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	9 cut(s)	225, 408, 876, 908, 954, 1266, 1421, 1603, 1854
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	4 cut(s)	56, 919, 1642, 1659
MmeI	TCCRAC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	951
Mph1103I	ATGCAT	1 cut(s)	1816
MroI	TCCGGA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	6 cut(s)	707, 935, 1146, 1169, 1586, 2161
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	951
MspA1I	CMGCKG	2 cut(s)	113, 1013
MspI	CCGG	7 cut(s)	8, 24, 528, 621, 651, 687, 1924
MunI	CAATTG	2 cut(s)	225, 1266
Mva1269I	GAATGC	2 cut(s)	427, 1979
MvaI	CCWGG	5 cut(s)	44, 518, 548, 948, 2055
MvnI	CGCG	1 cut(s)	1507
NciI	CCSGG	5 cut(s)	9, 622, 652, 1924, 1925
NcoI	CCATGG	2 cut(s)	1236, 1395
NheI	GCTAGC	1 cut(s)	730
NmeAIII	GCCGAG	1 cut(s)	1954
NmuCI	GTSAC	5 cut(s)	340, 580, 1438, 1826, 2066
NruI	TCGCGA	1 cut(s)	1507
NsiI	ATGCAT	1 cut(s)	1816
NspI	RCATGY	2 cut(s)	1799, 1814
NspV	TTCGAA	1 cut(s)	540
OliI	CACNNNNGTG	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	1814
PceI	AGGCCT	1 cut(s)	670
PciSI	GCTCTTC	2 cut(s)	399, 1604
PctI	GAATGC	2 cut(s)	427, 1979
PfeI	GAWTC	2 cut(s)	429, 531
PflMI	CCANNNNNTGG	1 cut(s)	1090
PfoI	TCCNGGA	1 cut(s)	546
PleI	GAGTC	4 cut(s)	55, 919, 1641, 1658
PpsI	GAGTC	4 cut(s)	55, 919, 1641, 1658
PpuMI	RGGWCCY	1 cut(s)	453
Psp124BI	GAGCTC	2 cut(s)	394, 1419
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	5 cut(s)	42, 516, 546, 946, 2053
PspFI	CCCAGC	3 cut(s)	275, 1358, 2093
PspGI	CCWGG	5 cut(s)	42, 516, 546, 946, 2053
PspPI	GGNCC	5 cut(s)	453, 689, 1033, 1094, 1926
PspPPI	RGGWCCY	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	1789
PvuII	CAGCTG	2 cut(s)	113, 1013
RruI	TCGCGA	1 cut(s)	1507
RsaI	GTAC	6 cut(s)	75, 644, 1800, 1843, 1934, 1994
RsaNI	GTAC	6 cut(s)	74, 643, 1799, 1842, 1933, 1993
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	2 cut(s)	394, 1419
SalI	GTCGAC	2 cut(s)	1526, 1721
SapI	GCTCTTC	2 cut(s)	399, 1604
SaqAI	TTAA	6 cut(s)	707, 935, 1146, 1169, 1586, 2161
Sau96I	GGNCC	5 cut(s)	453, 689, 1033, 1094, 1926
SchI	GAGTC	4 cut(s)	56, 919, 1642, 1659
SduI	GDGCHC	6 cut(s)	394, 608, 1220, 1419, 1616, 2146
SfaNI	GCATC	2 cut(s)	709, 1770
SfcI	CTRYAG	1 cut(s)	963
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	4 cut(s)	453, 689, 1033, 1094
SmaI	CCCGGG	1 cut(s)	1925
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	1180, 1712
SmoI	CTYRAG	2 cut(s)	1180, 1712
SpeI	ACTAGT	1 cut(s)	1801
SphI	GCATGC	1 cut(s)	1814
Sse9I	AATT	9 cut(s)	225, 408, 876, 908, 954, 1266, 1421, 1603, 1854
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	6 cut(s)	615, 635, 711, 1203, 1385, 1523
SspMI	CTAG	4 cut(s)	731, 735, 1559, 1802
SstI	GAGCTC	2 cut(s)	394, 1419
StuI	AGGCCT	1 cut(s)	670
StyI	CCWWGG	6 cut(s)	246, 783, 1236, 1395, 1426, 1488
TaaI	ACNGT	8 cut(s)	208, 242, 1290, 1569, 1618, 1630, 1660, 1727
TaqI	TCGA	7 cut(s)	540, 1173, 1527, 1722, 1749, 1914, 2106
TasI	AATT	9 cut(s)	225, 408, 876, 908, 954, 1266, 1421, 1603, 1854
TatI	WGTACW	3 cut(s)	1798, 1841, 1992
TfiI	GAWTC	2 cut(s)	429, 531
Tru1I	TTAA	6 cut(s)	707, 935, 1146, 1169, 1586, 2161
Tru9I	TTAA	6 cut(s)	707, 935, 1146, 1169, 1586, 2161
TscAI	CASTG	9 cut(s)	183, 298, 352, 1158, 1572, 1623, 1768, 1782, 2086
TseFI	GTSAC	5 cut(s)	340, 580, 1438, 1826, 2066
Tsp45I	GTSAC	5 cut(s)	340, 580, 1438, 1826, 2066
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	45, 166
TspMI	CCCGGG	1 cut(s)	1923
TspRI	CASTG	9 cut(s)	183, 298, 352, 1158, 1572, 1623, 1768, 1782, 2086
Van91I	CCANNNNNTGG	1 cut(s)	1090
VpaK11BI	GGWCC	4 cut(s)	453, 689, 1033, 1094
XagI	CCTNNNNNAGG	3 cut(s)	367, 515, 1712
XapI	RAATTY	2 cut(s)	908, 1603
XceI	RCATGY	2 cut(s)	1799, 1814
XmaI	CCCGGG	1 cut(s)	1923
XmiI	GTMKAC	2 cut(s)	1527, 1722
XspI	CTAG	4 cut(s)	731, 735, 1559, 1802
Zsp2I	ATGCAT	1 cut(s)	1816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.