Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466277.1

Orthogroup ID

OG0007050

Physical Location & Seq

Genomic Coordinates Forward (+)

19 .. 1314

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atgtcagcaattttcgctgaagttatgcaaggaaagccggagtttacagaccacttgactcacaaactgaagcatcaccctggccagattgaagctgcagccataatggagcacattcttgatggaagctcatacgtgaaagaagcgaaaaaggttcacgaaatggaccctcttcaaaagcctaagcaagacagatatgctctaagaacctccccacaatggctaggccccctgattgaggtgatcagatcatcaaccaaaatgattgagagggagatcaactctgtcaacgacaatccattgatcgatgtctcaaggaacaaggctttacacggtggaaacttccaaggaaccccaattggtactgccatggacaacaccagactcgccattgcctcaattgggaaactcatatttgcacaattctctgagcttgtcaatgactactacaacaatggcttgccttccaacctctcaggtggcagcaaccctagtttggactacgggttcaaaggtgcagaaatcgcaatggcatcttactgctccgagcttcagtttcttgccaaccctgtgaccaaccatgtccaaagtgctgagcaacacaaccaagatgtcaactcattgggactgatctcctctaggaaaacatccgaggctgtcgacattttgaagctgatgtcatccactttcctagttgcattgtgccaagctattgatctcaggtatgtggaggagaacttgaagaacgttgtcaagaacactgtaagtaatgtagcaaagaggaccctgaccgttgcccccaacggtgatcttcacccctctcgattctccgagaaacacctgctctcagtcgtggaccgcgagtaccttttctcctacattgacgacccctgccttgccacttacccattgatgcagaaactgagggcagagctagttgaacatgctttgaataatggtgacaaagagaagagcacaaacacctccatcttccacaagattgctgctttcgaagaggaactgaagaatgtcctgccaagagaagtcgacaatgcgaggatcgaaattgagaatgggaaagcagagatcgcaaacaggatcaaggactgcaggtcttacccattgtacaggtttgtgagggaggaattggggactagtttgttgacaggtgagaaaaccaagtcgcctggagaagaatgtgacaaggtgttcaatgcaatctgcgccggaaagctcattgatcctctgctggagtgtttgaaggagtggaatggtgcccccctgcccatagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016598 GO:0016829 GO:0016840 GO:0016841 GO:0019438 GO:0019538 GO:0019748 GO:0019941 GO:0030163 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044550 GO:0045548 GO:0046677 GO:0046898 GO:0050896 GO:0051603 GO:0060992 GO:0071704 GO:0097305 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko01100 ko01110 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

Lyase_aromatic

Protein Analysis

431

Amino Acids

47.96

Weight (kDa)

5.95

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10340 AT5G04230 AT5G04230
fragaria_vesca	FvH4_7g19130
malus_domestica	MD01G1106900.v1.1 MD07G1172700.v1.1
prunus_persica	Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1
pyrus_communis	pycom01g13360 pycom07g16720
rosa_chinensis	RchiOBHm_Chr1g0363011
rosa_laevigata	RLG00000027602
rosa_multiflora	Rmu_co8466277.1_g000001 Rmu_sc0000174.1_g000003 Rmu_ssc0000356.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293550
rosa_rugosa	Rorug01G0303500 Rorug04G0330100 Rorug04G0330200
rosa_samantha	Rh1AG312500 Rh1BG275900 Rh1CG292700 Rh1DG306500
rosa_wichuraiana	Rw1G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	849
Acc36I	ACCTGC	2 cut(s)	849, 1101
AccB1I	GGYRCC	1 cut(s)	1274
AccI	GTMKAC	2 cut(s)	660, 1047
AccII	CGCG	1 cut(s)	861
AciI	CCGC	1 cut(s)	859
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	3 cut(s)	1067, 1106, 1235
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	4 cut(s)	39, 89, 536, 1043
AfaI	GTAC	3 cut(s)	364, 866, 1127
AfiI	CCNNNNNNNGG	4 cut(s)	219, 238, 402, 496
AgsI	TTSAA	9 cut(s)	92, 176, 511, 670, 742, 941, 952, 1213, 1261
AhdI	GACNNNNNGTC	1 cut(s)	1111
AhlI	ACTAGT	1 cut(s)	1154
AjnI	CCWGG	2 cut(s)	79, 1186
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
AluBI	AGCT	9 cut(s)	95, 129, 433, 550, 673, 710, 934, 1234, 1292
AluI	AGCT	9 cut(s)	95, 129, 433, 550, 673, 710, 934, 1234, 1292
Alw21I	GWGCWC	2 cut(s)	114, 977
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	1067, 1106, 1235
AlwNI	CAGNNNCTG	1 cut(s)	922
AoxI	GGCC	2 cut(s)	82, 226
ApeKI	GCWGC	4 cut(s)	95, 98, 483, 1004
AspLEI	GCGC	1 cut(s)	1226
AspS9I	GGNCC	4 cut(s)	166, 227, 783, 856
AsuHPI	GGTGA	6 cut(s)	68, 253, 806, 818, 971, 1181
AsuII	TTCGAA	1 cut(s)	1011
AvaII	GGWCC	3 cut(s)	166, 783, 856
BaeGI	GKGCMC	1 cut(s)	1279
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	1274
Bbv12I	GWGCWC	2 cut(s)	114, 977
BbvI	GCAGC	4 cut(s)	82, 110, 495, 991
BccI	CCATC	2 cut(s)	116, 995
BciT130I	CCWGG	2 cut(s)	81, 1188
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	316
BcuI	ACTAGT	1 cut(s)	1154
BfaI	CTAG	6 cut(s)	224, 492, 639, 692, 935, 1155
BfmI	CTRYAG	2 cut(s)	96, 1108
BfuAI	ACCTGC	2 cut(s)	849, 1101
BisI	GCNGC	4 cut(s)	96, 99, 484, 1005
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	4 cut(s)	97, 100, 485, 1006
Bme1390I	CCNGG	2 cut(s)	81, 1188
Bme18I	GGWCC	3 cut(s)	166, 783, 856
BmeRI	GACNNNNNGTC	1 cut(s)	1111
BmgT120I	GGNCC	4 cut(s)	166, 227, 783, 856
BmiI	GGNNCC	5 cut(s)	168, 229, 352, 785, 1276
BmrFI	CCNGG	2 cut(s)	81, 1188
BmsI	GCATC	3 cut(s)	82, 542, 903
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	2 cut(s)	1209, 1271
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	136
BsaJI	CCNNGG	4 cut(s)	79, 346, 369, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 238, 402, 496
Bse3DI	GCAATG	2 cut(s)	390, 534
BseBI	CCWGG	2 cut(s)	81, 1188
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	79, 346, 369, 651
BseGI	GGATG	2 cut(s)	647, 680
BseLI	CCNNNNNNNGG	4 cut(s)	219, 238, 402, 496
BseMI	GCAATG	2 cut(s)	390, 534
BseMII	CTCAG	6 cut(s)	420, 489, 585, 733, 861, 914
BseRI	GAGGAG	2 cut(s)	625, 746
BseSI	GKGCMC	1 cut(s)	1279
BseXI	GCAGC	4 cut(s)	82, 110, 495, 991
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	2 cut(s)	84, 228
BshNI	GGYRCC	1 cut(s)	1274
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	114, 977
BsiSI	CCGG	2 cut(s)	38, 1227
BslFI	GGGAC	2 cut(s)	639, 1165
BslI	CCNNNNNNNGG	4 cut(s)	219, 238, 402, 496
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	639, 1165
BsnI	GGCC	2 cut(s)	84, 228
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	3 cut(s)	114, 977, 1279
Bsp1407I	TGTACA	1 cut(s)	1125
Bsp1720I	GCTNAGC	1 cut(s)	594
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	859
BspANI	GGCC	2 cut(s)	84, 228
BspCNI	CTCAG	6 cut(s)	421, 488, 586, 732, 860, 915
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	5 cut(s)	168, 229, 352, 785, 1276
BspMAI	CTGCAG	2 cut(s)	100, 1112
BspMI	ACCTGC	2 cut(s)	849, 1101
BspPI	GGATC	3 cut(s)	1067, 1106, 1235
BspQI	GCTCTTC	1 cut(s)	965
BspT104I	TTCGAA	1 cut(s)	1011
BspT107I	GGYRCC	1 cut(s)	1274
BsrDI	GCAATG	2 cut(s)	390, 534
BsrGI	TGTACA	1 cut(s)	1125
BssECI	CCNNGG	4 cut(s)	79, 346, 369, 651
BssT1I	CCWWGG	2 cut(s)	346, 369
Bst2UI	CCWGG	2 cut(s)	81, 1188
Bst4CI	ACNGT	4 cut(s)	335, 763, 793, 806
Bst6I	CTCTTC	3 cut(s)	177, 965, 1008
BstAUI	TGTACA	1 cut(s)	1125
BstBAI	YACGTR	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	8 cut(s)	183, 203, 429, 475, 594, 719, 847, 923
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	647, 680
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	1226
BstMAI	GTCTC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 34, 524, 1088, 1223
BstNI	CCWGG	2 cut(s)	81, 1188
BstNSI	RCATGY	1 cut(s)	947
BstSCI	CCNGG	2 cut(s)	79, 1186
BstSFI	CTRYAG	2 cut(s)	96, 1108
BstSLI	GKGCMC	1 cut(s)	1279
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	4 cut(s)	82, 110, 495, 991
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	84, 228
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	647, 680
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	2 cut(s)	849, 1101
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	922
CfoI	GCGC	1 cut(s)	1226
Cfr13I	GGNCC	4 cut(s)	166, 227, 783, 856
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	3 cut(s)	363, 865, 1126
CviAII	CATG	3 cut(s)	370, 581, 944
CviQI	GTAC	3 cut(s)	363, 865, 1126
DdeI	CTNAG	8 cut(s)	183, 203, 429, 475, 594, 719, 847, 923
DriI	GACNNNNNGTC	1 cut(s)	1111
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	177, 965, 1008
Eam1105I	GACNNNNNGTC	1 cut(s)	1111
EarI	CTCTTC	3 cut(s)	177, 965, 1008
Eco130I	CCWWGG	2 cut(s)	346, 369
Eco47I	GGWCC	3 cut(s)	166, 783, 856
Eco57I	CTGAAG	4 cut(s)	39, 89, 536, 1043
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoO109I	RGGNCCY	2 cut(s)	227, 783
EcoRII	CCWGG	2 cut(s)	79, 1186
EcoT14I	CCWWGG	2 cut(s)	346, 369
ErhI	CCWWGG	2 cut(s)	346, 369
FaeI	CATG	3 cut(s)	373, 584, 947
FaqI	GGGAC	2 cut(s)	639, 1165
FatI	CATG	3 cut(s)	369, 580, 943
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	2 cut(s)	660, 1047
Fnu4HI	GCNGC	4 cut(s)	96, 99, 484, 1005
FokI	GGATG	2 cut(s)	634, 667
Fsp4HI	GCNGC	4 cut(s)	96, 99, 484, 1005
FspBI	CTAG	6 cut(s)	224, 492, 639, 692, 935, 1155
GlaI	GCGC	1 cut(s)	1225
GluI	GCNGC	4 cut(s)	96, 99, 484, 1005
GsuI	CTGGAG	2 cut(s)	1209, 1271
HaeIII	GGCC	2 cut(s)	84, 228
HapII	CCGG	2 cut(s)	38, 1227
HhaI	GCGC	1 cut(s)	1226
Hin1II	CATG	3 cut(s)	373, 584, 947
Hin6I	GCGC	1 cut(s)	1224
HinP1I	GCGC	1 cut(s)	1224
HincII	GTYRAC	5 cut(s)	289, 616, 661, 1048, 1164
HindII	GTYRAC	5 cut(s)	289, 616, 661, 1048, 1164
HinfI	GANTC	3 cut(s)	58, 384, 825
HpaII	CCGG	2 cut(s)	38, 1227
HphI	GGTGA	6 cut(s)	68, 253, 806, 818, 971, 1181
Hpy166II	GTNNAC	8 cut(s)	45, 157, 289, 616, 661, 856, 1048, 1164
Hpy188I	TCNGA	5 cut(s)	248, 430, 547, 652, 832
Hpy188III	TCNNGA	4 cut(s)	119, 158, 754, 822
Hpy8I	GTNNAC	8 cut(s)	45, 157, 289, 616, 661, 856, 1048, 1164
HpyAV	CCTTC	2 cut(s)	474, 1255
HpyCH4III	ACNGT	4 cut(s)	335, 763, 793, 806
HpyCH4IV	ACGT	2 cut(s)	135, 747
HpyCH4V	TGCA	8 cut(s)	28, 98, 419, 518, 698, 916, 1110, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 34, 524, 1088, 1223
HpyF3I	CTNAG	8 cut(s)	183, 203, 429, 475, 594, 719, 847, 923
HpySE526I	ACGT	2 cut(s)	135, 747
Hsp92II	CATG	3 cut(s)	373, 584, 947
HspAI	GCGC	1 cut(s)	1224
Ksp22I	TGATCA	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	965
LmnI	GCTCC	2 cut(s)	109, 548
Lsp1109I	GCAGC	4 cut(s)	82, 110, 495, 991
LweI	GCATC	3 cut(s)	82, 542, 903
MaeI	CTAG	6 cut(s)	224, 492, 639, 692, 935, 1155
MaeII	ACGT	2 cut(s)	135, 747
MaeIII	GTNAC	3 cut(s)	571, 959, 1199
MboII	GAAGA	8 cut(s)	164, 754, 803, 982, 982, 1025, 1036, 1205
MfeI	CAATTG	2 cut(s)	357, 399
MhlI	GDGCHC	3 cut(s)	114, 977, 1279
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	6 cut(s)	9, 357, 399, 422, 1065, 1145
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	52, 378
MmeI	TCCRAC	1 cut(s)	492
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	2 cut(s)	38, 1227
MspR9I	CCNGG	2 cut(s)	81, 1188
MunI	CAATTG	2 cut(s)	357, 399
MvaI	CCWGG	2 cut(s)	81, 1188
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	5 cut(s)	14, 34, 524, 1088, 1223
NcoI	CCATGG	1 cut(s)	369
NlaIII	CATG	3 cut(s)	373, 584, 947
NlaIV	GGNNCC	5 cut(s)	168, 229, 352, 785, 1276
NmuCI	GTSAC	3 cut(s)	571, 959, 1199
NspI	RCATGY	1 cut(s)	947
NspV	TTCGAA	1 cut(s)	1011
PaqCI	CACCTGC	1 cut(s)	849
PciSI	GCTCTTC	1 cut(s)	965
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PfeI	GAWTC	1 cut(s)	825
PkrI	GCNGC	4 cut(s)	97, 100, 485, 1006
PleI	GAGTC	2 cut(s)	52, 378
PpsI	GAGTC	2 cut(s)	52, 378
Ppu21I	YACGTR	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	783
Psp1406I	AACGTT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	2 cut(s)	79, 1186
PspGI	CCWGG	2 cut(s)	79, 1186
PspN4I	GGNNCC	5 cut(s)	168, 229, 352, 785, 1276
PspPI	GGNCC	4 cut(s)	166, 227, 783, 856
PspPPI	RGGWCCY	1 cut(s)	783
PstI	CTGCAG	2 cut(s)	100, 1112
PstNI	CAGNNNCTG	1 cut(s)	922
RsaI	GTAC	3 cut(s)	364, 866, 1127
RsaNI	GTAC	3 cut(s)	363, 865, 1126
SalI	GTCGAC	2 cut(s)	659, 1046
SapI	GCTCTTC	1 cut(s)	965
SatI	GCNGC	4 cut(s)	96, 99, 484, 1005
Sau96I	GGNCC	4 cut(s)	166, 227, 783, 856
SchI	GAGTC	2 cut(s)	52, 378
ScrFI	CCNGG	2 cut(s)	81, 1188
SduI	GDGCHC	3 cut(s)	114, 977, 1279
SfaNI	GCATC	3 cut(s)	82, 542, 903
SfcI	CTRYAG	2 cut(s)	96, 1108
SfuI	TTCGAA	1 cut(s)	1011
SinI	GGWCC	3 cut(s)	166, 783, 856
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
SpeI	ACTAGT	1 cut(s)	1154
Sse9I	AATT	6 cut(s)	9, 357, 399, 422, 1065, 1145
SsiI	CCGC	1 cut(s)	859
SspMI	CTAG	6 cut(s)	224, 492, 639, 692, 935, 1155
StyD4I	CCNGG	2 cut(s)	79, 1186
StyI	CCWWGG	2 cut(s)	346, 369
TaaI	ACNGT	4 cut(s)	335, 763, 793, 806
TaiI	ACGT	2 cut(s)	138, 750
TaqI	TCGA	6 cut(s)	306, 660, 823, 1011, 1047, 1062
TasI	AATT	6 cut(s)	9, 357, 399, 422, 1065, 1145
TatI	WGTACW	1 cut(s)	1125
TfiI	GAWTC	1 cut(s)	825
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	3 cut(s)	571, 959, 1199
TseI	GCWGC	4 cut(s)	95, 98, 483, 1004
Tsp45I	GTSAC	3 cut(s)	571, 959, 1199
TspRI	CASTG	1 cut(s)	766
VpaK11BI	GGWCC	3 cut(s)	166, 783, 856
XagI	CCTNNNNNAGG	1 cut(s)	236
XceI	RCATGY	1 cut(s)	947
XmiI	GTMKAC	2 cut(s)	660, 1047
XspI	CTAG	6 cut(s)	224, 492, 639, 692, 935, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.