Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Reverse (-)

50476552 .. 50480240

Gene Structure 3689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGCACCCATCAAGGGTATTCTTAATCTGCAGAGGGCAGTTTTAGCCCGACATCATGTTGAGAAGTGGGGCCTAGGGTATAGGTTATTGAGCACTCAGGCTGCATCAACTGCTACTACTCCTCAACCTCCACCACCTCCCCCACCTCCTGAGAAAACCCATTTTGGTGGCTTGAAAGATGAAGACCGAATTTTTACCAACTTATATGGGCTGCATGACCCATTTCTCAAAGGTGCCATGAAGCGAGGTGACTGGCACAGAACCAAAGATTTAGTTATCAAAGGTTCTGATTGGATTGTTAATGAGATGAAGAAGTCTGGCCTCCGCGGACGTGGTGGTGCTGGTTTCCCATCTGGCCTCAAATGGTCTTTTATGCCAAAGGTATCTGATGGTCGCCCTTCCTATCTTGTTGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATAATGCGCCATGATCCACATAAGCTTTTAGAGGGTTGCCTGATTGCTGGCGTAGGGATGAGGGCCAGTGCTGCTTACATCTATATAAGAGGTGAATATGTGAATGAACGATTGAACCTTGAAAAGGCCAGAAAAGAAGCCTATGCAGCTGGGCTACTGGGCAAGAATGCTTGTGGATCTGGTTATGACTTTGATGTTCATATCCATTATGGTGCTGGTGCTTATATTTGTGGTGAAGAAACTGCACTTCTGGAGAGCCTTGAAGGCAAACAGGGAAAGCCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGATTATATGGCTGTCCCACTACTGTTACAAATGTGGAGACGGTGGCTGTTTCTCCCACCATTTTAAGGCGTGGACCTGAGTGGTTTTCCAGTTTTGGGAGGAAGAACAATGCAGGGACGAAATTGTTTTGTATCTCAGGACATGTTAACAAGCCTTGCACTGTTGAAGAGGAGATGAGTATACCCTTGAAAGAATTATTAGAGAGGCACTGCGGAGGCGTGAGGGGTGGATGGGATAACTTACTTGCAGTAATTCCAGGTGGTTCATCTGTTCCTTTGCTTACCAAGGACATATGTAATGATGTATTGATGGATTTTGATGCACTGAAGGCTGTCCAATCTGGGTTGGGGACTGCTGCTGTTATTGTGATGGATAAATCAACTGATATTGTGGATGCAATTGCACGACTTTCTTACTTCTACAAGCATGAGAGCTGTGGGCAGTGCACACCGTGCAGAGAGGGGACTGGATGGCTTTGGATGATCATGGAAAGAATGAAAGTTGGGAATGCAAAGTTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACGATCTGTGCTTTGGGTGATGCTGCTGCTTGGCCTGTGCAAGGTCTGATAAGGCATTTCAGGCCAGAGATGGAGAGGAGGATCAGGGAGCGTGCTGAGAGGGAGCTGCTGGAGGCAGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

486

Amino Acids

53.46

Weight (kDa)

8.31

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_51K	PF01512	103 - 272	4.5e-45	Nuo51 FMN-binding domain
SLBB_2	PF22461	297 - 379	7.3e-18	SLBB domain
SLBB	PF10531	299 - 347	8.9e-06	SLBB domain
NADH_4Fe-4S	PF10589	388 - 471	1.9e-32	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 233
AccI	GTMKAC	1 cut(s)	949
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	325, 327, 981
AclWI	GGATC	3 cut(s)	464, 640, 1424
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	2 cut(s)	1115, 1289
AdeI	CACNNNGTG	1 cut(s)	1221
AfiI	CCNNNNNNNGG	5 cut(s)	14, 580, 834, 864, 1376
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	7 cut(s)	175, 571, 578, 719, 745, 935, 958
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	433, 1024
AjuI	GAANNNNNNNTTGG	2 cut(s)	1268, 1300
AluBI	AGCT	5 cut(s)	481, 605, 1203, 1441, 1454
AluI	AGCT	5 cut(s)	481, 605, 1203, 1441, 1454
Alw21I	GWGCWC	2 cut(s)	95, 1217
Alw26I	GTCTC	1 cut(s)	800
Alw44I	GTGCAC	1 cut(s)	1213
AlwI	GGATC	3 cut(s)	464, 640, 1424
AoxI	GGCC	7 cut(s)	70, 319, 355, 519, 582, 1367, 1397
ApaLI	GTGCAC	1 cut(s)	1213
ApoI	RAATTY	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	70, 519, 842
AsuHPI	GGTGA	5 cut(s)	260, 560, 701, 1324, 1364
AvaII	GGWCC	1 cut(s)	842
AvrII	CCTAGG	1 cut(s)	73
BaeGI	GKGCMC	2 cut(s)	1217, 1335
BanI	GGYRCC	2 cut(s)	4, 233
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	95, 1217
BbvI	GCAGC	9 cut(s)	88, 198, 514, 614, 1111, 1345, 1348, 1428, 1441
BccI	CCATC	8 cut(s)	17, 358, 383, 993, 1072, 1132, 1233, 1399
BciT130I	CCWGG	2 cut(s)	435, 1026
BclI	TGATCA	1 cut(s)	1251
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	2 cut(s)	74, 1459
BfmI	CTRYAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	720
BlnI	CCTAGG	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	435, 1026
Bme18I	GGWCC	1 cut(s)	842
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	70, 519, 842
BmiI	GGNNCC	4 cut(s)	6, 71, 235, 439
BmrFI	CCNGG	2 cut(s)	435, 1026
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	4 cut(s)	113, 1078, 1153, 1345
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	73, 325, 1053
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 580, 834, 864, 1376
Bse1I	ACTGG	5 cut(s)	257, 522, 618, 858, 1240
BseBI	CCWGG	2 cut(s)	435, 1026
BseDI	CCNNGG	3 cut(s)	73, 325, 1053
BseGI	GGATG	5 cut(s)	519, 1004, 1168, 1244, 1254
BseLI	CCNNNNNNNGG	5 cut(s)	14, 580, 834, 864, 1376
BseMII	CTCAG	5 cut(s)	110, 141, 837, 918, 1422
BseNI	ACTGG	5 cut(s)	257, 522, 618, 858, 1240
BseRI	GAGGAG	3 cut(s)	111, 953, 1426
BseSI	GKGCMC	2 cut(s)	1217, 1335
BseXI	GCAGC	9 cut(s)	88, 198, 514, 614, 1111, 1345, 1348, 1428, 1441
BseYI	CCCAGC	1 cut(s)	605
BsgI	GTGCAG	2 cut(s)	684, 1243
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	7 cut(s)	72, 321, 357, 521, 584, 1369, 1399
BshNI	GGYRCC	2 cut(s)	4, 233
BsiHKAI	GWGCWC	2 cut(s)	95, 1217
BslFI	GGGAC	4 cut(s)	768, 898, 1132, 1246
BslI	CCNNNNNNNGG	5 cut(s)	14, 580, 834, 864, 1376
BsmAI	GTCTC	1 cut(s)	800
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	4 cut(s)	768, 898, 1132, 1246
BsmI	GAATGC	2 cut(s)	628, 1282
BsnI	GGCC	7 cut(s)	72, 321, 357, 521, 584, 1369, 1399
Bsp1286I	GDGCHC	3 cut(s)	95, 1217, 1335
Bsp143I	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
BspACI	CCGC	3 cut(s)	325, 327, 981
BspANI	GGCC	7 cut(s)	72, 321, 357, 521, 584, 1369, 1399
BspCNI	CTCAG	5 cut(s)	109, 142, 838, 917, 1423
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	4 cut(s)	6, 71, 235, 439
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	464, 640, 1424
BspT107I	GGYRCC	2 cut(s)	4, 233
BsrI	ACTGG	5 cut(s)	257, 522, 618, 858, 1240
BssECI	CCNNGG	3 cut(s)	73, 325, 1053
BssMI	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
BssNAI	GTATAC	1 cut(s)	950
BssT1I	CCWWGG	2 cut(s)	73, 1053
Bst1107I	GTATAC	1 cut(s)	950
Bst2UI	CCWGG	2 cut(s)	435, 1026
Bst4CI	ACNGT	4 cut(s)	793, 811, 931, 1221
Bst6I	CTCTTC	2 cut(s)	930, 1284
BstAPI	GCANNNNNTGC	2 cut(s)	110, 1221
BstC8I	GCNNGC	2 cut(s)	505, 1428
BstDEI	CTNAG	5 cut(s)	96, 150, 846, 904, 1431
BstDSI	CCRYGG	1 cut(s)	325
BstEII	GGTNACC	1 cut(s)	1312
BstENI	CCTNNNNNAGG	2 cut(s)	578, 1374
BstF5I	GGATG	5 cut(s)	519, 1004, 1168, 1244, 1254
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	5 cut(s)	472, 635, 1254, 1341, 1419
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 110, 527, 602, 720, 1097, 1221, 1396
BstNI	CCWGG	2 cut(s)	435, 1026
BstNSI	RCATGY	2 cut(s)	914, 1303
BstPI	GGTNACC	1 cut(s)	1312
BstSCI	CCNGG	2 cut(s)	433, 1024
BstSFI	CTRYAG	1 cut(s)	29
BstSLI	GKGCMC	2 cut(s)	1217, 1335
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	9 cut(s)	88, 198, 514, 614, 1111, 1345, 1348, 1428, 1441
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	632
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	632
BstZ17I	GTATAC	1 cut(s)	950
BsuRI	GGCC	7 cut(s)	72, 321, 357, 521, 584, 1369, 1399
BtgI	CCRYGG	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	5 cut(s)	519, 1004, 1168, 1244, 1254
BtsI	GCAGTG	2 cut(s)	976, 1217
BtsIMutI	CAGTG	5 cut(s)	529, 927, 976, 1091, 1217
Cac8I	GCNNGC	2 cut(s)	505, 1428
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	70, 519, 842
Cfr42I	CCGCGG	1 cut(s)	328
CviAII	CATG	8 cut(s)	56, 215, 238, 467, 911, 1196, 1255, 1300
DdeI	CTNAG	5 cut(s)	96, 150, 846, 904, 1431
DpnI	GATC	5 cut(s)	471, 634, 1253, 1340, 1418
DpnII	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
DraIII	CACNNNGTG	1 cut(s)	1221
Eam1104I	CTCTTC	2 cut(s)	930, 1284
EarI	CTCTTC	2 cut(s)	930, 1284
Eco130I	CCWWGG	2 cut(s)	73, 1053
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	2 cut(s)	1115, 1289
Eco91I	GGTNACC	1 cut(s)	1312
EcoNI	CCTNNNNNAGG	2 cut(s)	578, 1374
EcoO109I	RGGNCCY	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	1312
EcoRII	CCWGG	2 cut(s)	433, 1024
EcoT14I	CCWWGG	2 cut(s)	73, 1053
ErhI	CCWWGG	2 cut(s)	73, 1053
Esp3I	CGTCTC	1 cut(s)	800
FaeI	CATG	8 cut(s)	59, 218, 241, 470, 914, 1199, 1258, 1303
FaqI	GGGAC	4 cut(s)	768, 898, 1132, 1246
FatI	CATG	8 cut(s)	55, 214, 237, 466, 910, 1195, 1254, 1299
FauNDI	CATATG	1 cut(s)	1061
FbaI	TGATCA	1 cut(s)	1251
FblI	GTMKAC	1 cut(s)	949
FokI	GGATG	5 cut(s)	526, 1011, 1175, 1251, 1261
FspBI	CTAG	2 cut(s)	74, 1459
GlaI	GCGC	1 cut(s)	464
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	7 cut(s)	72, 321, 357, 521, 584, 1369, 1399
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	8 cut(s)	59, 218, 241, 470, 914, 1199, 1258, 1303
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	1 cut(s)	479
HpaI	GTTAAC	1 cut(s)	916
HphI	GGTGA	5 cut(s)	260, 560, 701, 1324, 1364
Hpy166II	GTNNAC	5 cut(s)	431, 842, 916, 950, 1215
Hpy188I	TCNGA	3 cut(s)	289, 388, 1383
Hpy188III	TCNNGA	4 cut(s)	149, 707, 906, 1307
Hpy8I	GTNNAC	5 cut(s)	431, 842, 916, 950, 1215
HpyAV	CCTTC	3 cut(s)	408, 713, 1090
HpyCH4III	ACNGT	4 cut(s)	793, 811, 931, 1221
HpyCH4IV	ACGT	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 110, 527, 602, 720, 1097, 1221, 1396
HpyF3I	CTNAG	5 cut(s)	96, 150, 846, 904, 1431
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	8 cut(s)	59, 218, 241, 470, 914, 1199, 1258, 1303
HspAI	GCGC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	1251
KspAI	GTTAAC	1 cut(s)	916
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
LmnI	GCTCC	2 cut(s)	1423, 1438
Lsp1109I	GCAGC	9 cut(s)	88, 198, 514, 614, 1111, 1345, 1348, 1428, 1441
LweI	GCATC	4 cut(s)	113, 1078, 1153, 1345
MaeI	CTAG	2 cut(s)	74, 1459
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	248, 793, 1312
MalI	GATC	5 cut(s)	471, 634, 1253, 1340, 1418
MboI	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
MboII	GAAGA	6 cut(s)	194, 322, 704, 883, 947, 1301
MfeI	CAATTG	1 cut(s)	1167
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	3 cut(s)	95, 1217, 1335
MluCI	AATT	5 cut(s)	189, 890, 962, 1020, 1167
MmeI	TCCRAC	1 cut(s)	1266
MseI	TTAA	4 cut(s)	24, 300, 833, 915
MslI	CAYNNNNRTG	2 cut(s)	165, 666
MspA1I	CMGCKG	3 cut(s)	327, 605, 1454
MspR9I	CCNGG	2 cut(s)	435, 1026
MunI	CAATTG	1 cut(s)	1167
Mva1269I	GAATGC	2 cut(s)	628, 1282
MvaI	CCWGG	2 cut(s)	435, 1026
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	8 cut(s)	44, 110, 527, 602, 720, 1097, 1221, 1396
NdeI	CATATG	1 cut(s)	1061
NdeII	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
NlaIII	CATG	8 cut(s)	59, 218, 241, 470, 914, 1199, 1258, 1303
NlaIV	GGNNCC	4 cut(s)	6, 71, 235, 439
NmuCI	GTSAC	2 cut(s)	248, 1312
NspI	RCATGY	2 cut(s)	914, 1303
PciI	ACATGT	1 cut(s)	910
PctI	GAATGC	2 cut(s)	628, 1282
PscI	ACATGT	1 cut(s)	910
Psp6I	CCWGG	2 cut(s)	433, 1024
PspEI	GGTNACC	1 cut(s)	1312
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	433, 1024
PspN4I	GGNNCC	4 cut(s)	6, 71, 235, 439
PspPI	GGNCC	3 cut(s)	70, 519, 842
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	632
PvuII	CAGCTG	2 cut(s)	605, 1454
RseI	CAYNNNNRTG	2 cut(s)	165, 666
SacII	CCGCGG	1 cut(s)	328
SaqAI	TTAA	4 cut(s)	24, 300, 833, 915
Sau3AI	GATC	5 cut(s)	469, 632, 1251, 1338, 1416
Sau96I	GGNCC	3 cut(s)	70, 519, 842
ScrFI	CCNGG	2 cut(s)	435, 1026
SduI	GDGCHC	3 cut(s)	95, 1217, 1335
SfaNI	GCATC	4 cut(s)	113, 1078, 1153, 1345
SfcI	CTRYAG	1 cut(s)	29
Sfr303I	CCGCGG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	2 cut(s)	165, 666
Sse9I	AATT	5 cut(s)	189, 890, 962, 1020, 1167
SsiI	CCGC	3 cut(s)	325, 327, 981
SspMI	CTAG	2 cut(s)	74, 1459
StyD4I	CCNGG	2 cut(s)	433, 1024
StyI	CCWWGG	2 cut(s)	73, 1053
TaaI	ACNGT	4 cut(s)	793, 811, 931, 1221
TaiI	ACGT	1 cut(s)	334
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	189, 890, 962, 1020, 1167
Tru1I	TTAA	4 cut(s)	24, 300, 833, 915
Tru9I	TTAA	4 cut(s)	24, 300, 833, 915
TscAI	CASTG	5 cut(s)	529, 934, 983, 1098, 1217
TseFI	GTSAC	2 cut(s)	248, 1312
Tsp45I	GTSAC	2 cut(s)	248, 1312
TspDTI	ATGAA	8 cut(s)	195, 254, 323, 438, 576, 644, 1023, 1280
TspRI	CASTG	5 cut(s)	529, 934, 983, 1098, 1217
VneI	GTGCAC	1 cut(s)	1213
VpaK11BI	GGWCC	1 cut(s)	842
XagI	CCTNNNNNAGG	2 cut(s)	578, 1374
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	2 cut(s)	914, 1303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmaJI	CCTAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	949
XspI	CTAG	2 cut(s)	74, 1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.