Rh1AG228200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003488
Physical Location & Seq
Forward (+)
43488652 .. 43490493
1842 bp
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UTR
Exon/CDS
Intron
Rh1AG228200.1

Sequence Viewer

Length: 204 bp
ATGCAGCACCAGTATTGGTCATTTGGTCTTGGCCTTAATCTTTGGGGCAGCCTTGATTGCTTAAAAGCAGTTTGCTTCAAGAGGGTTCTACGCTTCATCCCCCAAGTTCCTGATGCCATTTCTCTAGAGGACTGTGTTCCTCCCATGCTTCTCAATTATGACGTCTCTGCCTTCAGTGGCTATCAGTGGCAATATCAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.76

Weight (kDa)

5.45

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 4, 48
BbvI GCAGC 2 cut(s) 16, 60
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 5, 49
BlsI GCNGC 2 cut(s) 6, 50
BmsI GCATC 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 16, 60
BshFI GGCC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 33
BspANI GGCC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 16, 60
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 181, 191
CviAII CATG 1 cut(s) 145
CviJI RGCY 4 cut(s) 33, 51, 180, 200
CviKI_1 RGCY 4 cut(s) 33, 51, 180, 200
Eco57I CTGAAG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 146, 159
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 5, 49
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 5, 49
FspBI CTAG 1 cut(s) 125
GluI GCNGC 2 cut(s) 5, 49
HaeIII GGCC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 79, 110, 125
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 148
LpnPI CCDG 2 cut(s) 23, 123
Lsp1109I GCAGC 2 cut(s) 16, 60
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 162
MluCI AATT 1 cut(s) 154
MnlI CCTC 3 cut(s) 75, 121, 150
MseI TTAA 2 cut(s) 36, 62
MwoI GCNNNNNNNGC 1 cut(s) 57
NlaIII CATG 1 cut(s) 148
PkrI GCNGC 2 cut(s) 6, 50
SaqAI TTAA 2 cut(s) 36, 62
SatI GCNGC 2 cut(s) 5, 49
SetI ASST 1 cut(s) 165
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 8 cut(s) 22, 41, 65, 91, 116, 122, 137, 157
Sse9I AATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 165
TasI AATT 1 cut(s) 154
Tru1I TTAA 2 cut(s) 36, 62
Tru9I TTAA 2 cut(s) 36, 62
TscAI CASTG 2 cut(s) 181, 191
TseI GCWGC 2 cut(s) 4, 48
TspDTI ATGAA 1 cut(s) 85
TspRI CASTG 2 cut(s) 181, 191
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 1 cut(s) 125
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.