Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Forward (+)

59965323 .. 59966918

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGAGAAAATTCTTCGACATCAAATCGGACCGGTGGTCTGTGGAGATCAAGGAGGCTCTGGTGGAACTCAGTGGTGTGAACAACTTCTTCATATTCGACACTTCAAAAAATAAAGTGAGTTTTGAGGTTCCTGTTACAACCTATTTTGACAATTATATTTTCATTGGCAAAATAGGTCTATCCATGGATGCCATCGGCAATATGGAGTTTGACTATCTTGCAAATGGACATTATGCCATTGTTGCAAGGTTCTATACTCCATCCCCCAAGTTCCCTGATGCCATGTCTCTAGAGGATTGTGTTCCTTCCATTTTTCTCAATTATGGCTTCTCTGCCTTCAGTGGTTGTCAGTGGGAATATCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

tRNA_Me_trans

Protein Analysis

124

Amino Acids

14.14

Weight (kDa)

4.61

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	325
AgeI	ACCGGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	108
AhdI	GACNNNNNGTC	1 cut(s)	37
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	31
BccI	CCATC	2 cut(s)	203, 271
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	2 cut(s)	181, 271
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	196, 263
BseMII	CTCAG	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	196, 263
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	196, 263
BtsIMutI	CAGTG	3 cut(s)	79, 349, 359
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	31
CpoI	CGGWCCG	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	33
CspI	CGGWCCG	1 cut(s)	31
CviAII	CATG	2 cut(s)	187, 286
CviJI	RGCY	3 cut(s)	59, 330, 368
CviKI_1	RGCY	3 cut(s)	59, 330, 368
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	190, 289
FaiI	YATR	8 cut(s)	95, 159, 188, 206, 237, 258, 287, 327
FatI	CATG	2 cut(s)	186, 285
FokI	GGATG	2 cut(s)	203, 250
FspBI	CTAG	1 cut(s)	293
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	190, 289
HindIII	AAGCTT	1 cut(s)	366
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	318, 349
HpyCH4V	TGCA	2 cut(s)	224, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	190, 289
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	4 cut(s)	47, 47, 147, 291
LweI	GCATC	2 cut(s)	181, 271
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	7, 82
MluCI	AATT	3 cut(s)	11, 154, 322
MnlI	CCTC	3 cut(s)	49, 121, 289
MroXI	GAANNNNTTC	1 cut(s)	86
MspI	CCGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	190, 289
NlaIV	GGNNCC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	31
Rsr2I	CGGWCCG	1 cut(s)	31
RsrII	CGGWCCG	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	5 cut(s)	132, 146, 181, 254, 370
SfaNI	GCATC	2 cut(s)	181, 271
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	3 cut(s)	11, 154, 322
SspMI	CTAG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	2 cut(s)	18, 99
TasI	AATT	3 cut(s)	11, 154, 322
TscAI	CASTG	3 cut(s)	79, 349, 359
TspDTI	ATGAA	2 cut(s)	82, 154
TspRI	CASTG	3 cut(s)	79, 349, 359
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	11
XbaI	TCTAGA	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.