RLG00000027189

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003488
Physical Location & Seq
Reverse (-)
9382543 .. 9383105
563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027189

Sequence Viewer

Length: 336 bp
ATGGATGATAGAAGAGTTGCCGCTACATGTAGCGGCTTCGTTTGCCTGTGGTTGCGACGACCTTCTTCGAAACGGTGGAGATTGCCTGTGAGGTGGAGGAGGGTGGTCGAGATTGGGTCGGGTTTGGCCCTGGGTTTGCGATTGACTCTCGACTTCTTGGTTCGAATGGTTCTTGATTCCGGCGACGAGGCAGTAGCCGTACGAGCGGCCGCGCGTGCCTTCGTCGAAGGCCTTGACGATGATCCCCTTGCAGCCGCCGTAGTGACCTTGGAGGAGGATGGAGAGGAGGTTCAGACTGAGCTGACCGATCCGAAGAAGGTGAGCGACGGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.25

Weight (kDa)

4.98

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 206
AccII CGCG 2 cut(s) 212, 214
AciI CCGC 5 cut(s) 21, 33, 206, 210, 255
AclWI GGATC 2 cut(s) 236, 302
AcoI YGGCCR 1 cut(s) 207
AfaI GTAC 1 cut(s) 201
AflIII ACRYGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 2 cut(s) 236, 302
AoxI GGCC 3 cut(s) 126, 207, 229
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 331
AsuII TTCGAA 2 cut(s) 68, 163
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 272
BceAI ACGGC 2 cut(s) 182, 242
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 334
BisI GCNGC 6 cut(s) 21, 34, 207, 210, 252, 255
BlsI GCNGC 6 cut(s) 22, 35, 208, 211, 253, 256
Bme1390I CCNGG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 131
Bpu14I TTCGAA 2 cut(s) 68, 163
BsaJI CCNNGG 3 cut(s) 129, 130, 267
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 129, 130, 267
BseGI GGATG 2 cut(s) 10, 283
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 3 cut(s) 112, 287, 299
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 2 cut(s) 212, 214
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 128, 209, 231
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 180
BsiWI CGTACG 1 cut(s) 199
BsnI GGCC 3 cut(s) 128, 209, 231
Bsp119I TTCGAA 2 cut(s) 68, 163
Bsp143I GATC 2 cut(s) 241, 307
BspACI CCGC 5 cut(s) 21, 33, 206, 210, 255
BspANI GGCC 3 cut(s) 128, 209, 231
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 2 cut(s) 212, 214
BspPI GGATC 2 cut(s) 236, 302
BspT104I TTCGAA 2 cut(s) 68, 163
BsrBI CCGCTC 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 129, 130, 267
BssMI GATC 2 cut(s) 241, 307
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 7
BstBI TTCGAA 2 cut(s) 68, 163
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 10, 283
BstFNI CGCG 2 cut(s) 212, 214
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 244, 310
BstMBI GATC 2 cut(s) 241, 307
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 42, 203, 215
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 2 cut(s) 212, 214
BstV1I GCAGC 1 cut(s) 263
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 3 cut(s) 128, 209, 231
BtsCI GGATG 2 cut(s) 10, 283
Cac8I GCNNGC 1 cut(s) 216
CciNI GCGGCCGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 27
CviJI RGCY 7 cut(s) 36, 128, 197, 209, 231, 254, 301
CviKI_1 RGCY 7 cut(s) 36, 128, 197, 209, 231, 254, 301
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 243, 309
DpnII GATC 2 cut(s) 241, 307
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 30
FaiI YATR 1 cut(s) 28
FatI CATG 1 cut(s) 26
Fnu4HI GCNGC 6 cut(s) 21, 34, 207, 210, 252, 255
FokI GGATG 2 cut(s) 17, 290
Fsp4HI GCNGC 6 cut(s) 21, 34, 207, 210, 252, 255
FspBI CTAG 1 cut(s) 334
GlaI GCGC 1 cut(s) 213
GluI GCNGC 6 cut(s) 21, 34, 207, 210, 252, 255
HaeIII GGCC 3 cut(s) 128, 209, 231
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 30
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 2 cut(s) 145, 176
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 294, 312
Hpy188III TCNNGA 3 cut(s) 109, 149, 173
Hpy99I CGWCG 4 cut(s) 60, 188, 227, 329
HpyAV CCTTC 4 cut(s) 72, 221, 229, 310
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 203, 215
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 1 cut(s) 30
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 2 cut(s) 241, 307
LpnPI CCDG 5 cut(s) 59, 99, 116, 143, 193
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 243, 309
MbiI CCGCTC 1 cut(s) 206
MboI GATC 2 cut(s) 241, 307
MboII GAAGA 3 cut(s) 24, 57, 325
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 8 cut(s) 84, 90, 93, 181, 265, 268, 277, 280
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 212, 214
MwoI GCNNNNNNNGC 3 cut(s) 42, 203, 215
NdeII GATC 2 cut(s) 241, 307
NlaIII CATG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 262
NotI GCGGCCGC 1 cut(s) 207
NspI RCATGY 1 cut(s) 30
NspV TTCGAA 2 cut(s) 68, 163
PasI CCCWGGG 1 cut(s) 130
PceI AGGCCT 1 cut(s) 231
PciI ACATGT 1 cut(s) 26
PfeI GAWTC 1 cut(s) 176
Pfl23II CGTACG 1 cut(s) 199
PkrI GCNGC 6 cut(s) 22, 35, 208, 211, 253, 256
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspLI CGTACG 1 cut(s) 199
PspPI GGNCC 1 cut(s) 127
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SatI GCNGC 6 cut(s) 21, 34, 207, 210, 252, 255
Sau3AI GATC 2 cut(s) 241, 307
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 64, 95, 269, 291, 303, 321
SfuI TTCGAA 2 cut(s) 68, 163
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 5 cut(s) 21, 33, 206, 210, 255
SspMI CTAG 1 cut(s) 334
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 5 cut(s) 68, 108, 150, 163, 225
TaqII GACCGA 1 cut(s) 320
TauI GCSGC 5 cut(s) 23, 36, 209, 212, 257
TfiI GAWTC 1 cut(s) 176
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 262
XceI RCATGY 1 cut(s) 30
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.