Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Forward (+)

195616 .. 199005

Gene Structure 3390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTGCGGACTATCTTCTCTCAACCCAGTTGGACCTGGACCTTGGAAACTATGAGCGATTCCTAGAAATCAAGCTGACCCATGATAATAATATTTCTACCGAAATGATTTACCAGGTTATCCCTCACATCACAGATGCTATCCAAGACTGGATTAGGCGTGTAGCATATATACCAGTTGATGGAAAGTCAGGCCTTGCTGAGCACCAGTATTGGTCATTTGGTCTTGGCCTTAATCTTTGGGGCAGCCTTGATTGCTTAAAAGCAGTTTGCTTCAAGAGGGTCTGCTACTGTGCCTATCTATCACATTCAAAGGGCAAAACACTTCCTTTTATTACTGTTGAAGAAGGAACTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

119

Amino Acids

13.62

Weight (kDa)

5.72

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	10 - 56	3.3e-08	CTP synthase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AciI	CCGC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	277, 312, 344
AjnI	CCWGG	2 cut(s)	36, 114
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	207
AoxI	GGCC	2 cut(s)	193, 229
ApeKI	GCWGC	2 cut(s)	5, 246
AspS9I	GGNCC	2 cut(s)	34, 40
AvaII	GGWCC	2 cut(s)	34, 40
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	38, 116
BfaI	CTAG	2 cut(s)	65, 358
BisI	GCNGC	2 cut(s)	6, 247
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	7, 248
Bme1390I	CCNGG	2 cut(s)	38, 116
Bme18I	GGWCC	2 cut(s)	34, 40
BmgT120I	GGNCC	2 cut(s)	34, 40
BmrFI	CCNGG	2 cut(s)	38, 116
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	22
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	4 cut(s)	28, 155, 176, 208
BseBI	CCWGG	2 cut(s)	38, 116
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	4 cut(s)	28, 155, 176, 208
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	2 cut(s)	195, 231
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	2 cut(s)	195, 231
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	195, 231
BspCNI	CTCAG	1 cut(s)	193
BsrI	ACTGG	4 cut(s)	28, 155, 176, 208
BssECI	CCNNGG	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	38, 116
Bst4CI	ACNGT	2 cut(s)	293, 340
BstDEI	CTNAG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	2 cut(s)	38, 116
BstSCI	CCNGG	2 cut(s)	36, 114
BstV1I	GCAGC	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	195, 231
Cfr13I	GGNCC	2 cut(s)	34, 40
CsiI	ACCWGGT	1 cut(s)	114
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	5, 76, 195, 231, 249
CviKI_1	RGCY	5 cut(s)	5, 76, 195, 231, 249
DdeI	CTNAG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	34, 40
EcoRII	CCWGG	2 cut(s)	36, 114
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	54, 84, 169, 171, 173
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	6, 247
Fsp4HI	GCNGC	2 cut(s)	6, 247
FspBI	CTAG	2 cut(s)	65, 358
GluI	GCNGC	2 cut(s)	6, 247
HaeIII	GGCC	2 cut(s)	195, 231
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	293, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	86
LpnPI	CCDG	9 cut(s)	23, 41, 50, 101, 128, 136, 177, 189, 221
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	127
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	2 cut(s)	65, 358
MboII	GAAGA	2 cut(s)	8, 356
MhlI	GDGCHC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	2 cut(s)	135, 273
MseI	TTAA	2 cut(s)	234, 260
MspR9I	CCNGG	2 cut(s)	38, 116
MvaI	CCWGG	2 cut(s)	38, 116
MwoI	GCNNNNNNNGC	1 cut(s)	255
NlaIII	CATG	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	7, 248
Psp6I	CCWGG	2 cut(s)	36, 114
PspGI	CCWGG	2 cut(s)	36, 114
PspPI	GGNCC	2 cut(s)	34, 40
SaqAI	TTAA	2 cut(s)	234, 260
SatI	GCNGC	2 cut(s)	6, 247
Sau96I	GGNCC	2 cut(s)	34, 40
ScrFI	CCNGG	2 cut(s)	38, 116
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	4 cut(s)	39, 45, 78, 120
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	2 cut(s)	34, 40
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	2 cut(s)	65, 358
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	36, 114
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	293, 340
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	234, 260
Tru9I	TTAA	2 cut(s)	234, 260
TseI	GCWGC	2 cut(s)	5, 246
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	34, 40
XspI	CTAG	2 cut(s)	65, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.