Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Forward (+)

195331 .. 198149

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCTGCGGACTATCTTCTCTCAACCCAGGTTATCCCTCACATCACAGATGCTATCCAAGACTGGATTAGGCGTGTAGCATATATACCAGTTGATGGAAAGTCAGGCCTTGCTGAGCACCAGTATTGGTCATTTGGTCTTGGCCTTAATCTTTGGGGCAGCCTTGATTGCTTAAAAGCAGTTTGCTTCAAGAGGGTAATCACTCAAACTCAATCCTTTCTAGTATCTATTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

79

Amino Acids

8.88

Weight (kDa)

6.69

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	106, 142
ApeKI	GCWGC	2 cut(s)	5, 159
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	29
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	6, 160
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	2 cut(s)	7, 161
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	3 cut(s)	68, 89, 121
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	3 cut(s)	68, 89, 121
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	108, 144
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	2 cut(s)	108, 144
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	108, 144
BspCNI	CTCAG	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	68, 89, 121
BssECI	CCNNGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	108, 144
CviJI	RGCY	4 cut(s)	5, 108, 144, 162
CviKI_1	RGCY	4 cut(s)	5, 108, 144, 162
DdeI	CTNAG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	27
FaiI	YATR	3 cut(s)	82, 84, 86
Fnu4HI	GCNGC	2 cut(s)	6, 160
Fsp4HI	GCNGC	2 cut(s)	6, 160
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	6, 160
HaeIII	GGCC	2 cut(s)	108, 144
Hpy188III	TCNNGA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	14, 41, 49, 90, 102, 134
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	221
MboII	GAAGA	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	48, 186
MseI	TTAA	2 cut(s)	147, 173
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	7, 161
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	147, 173
SatI	GCNGC	2 cut(s)	6, 160
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	40
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	147, 173
Tru9I	TTAA	2 cut(s)	147, 173
TseI	GCWGC	2 cut(s)	5, 159
Van91I	CCANNNNNTGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.