Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Reverse (-)

77642967 .. 77644861

Gene Structure 1895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG564700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATGATAGAAGAGTTGCCGCTACATGTAGCGGCTTCGTTTGCCTGTGGTTGCGACGACCCTCTTCGAAGCGGTGGAGATTGCGTGTGGTCATAGCTGAAAGTGAGGTGGAGGAGGGTGGTCGGGGATTGGGTTGGGTTTGGCCCTGGGTTTGCGGTATATTAAACAATGAGGTCGAGGACTCTAAGGTCCCAGCTGCATCGCATGGGTTTGAATCAAACGGTTTGATTGATAGTGTGAGATCAAATTTTGATTTGGAATTCTGCTATTTGGTAGATTTGGGCCATGAACCGGAACGAAAGTTCTTGCCCTCGATCTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.28

Weight (kDa)

5.35

Isoelectric Point (pI)

68.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AciI	CCGC	4 cut(s)	21, 33, 73, 156
AcsI	RAATTY	2 cut(s)	247, 260
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	98, 197
AluI	AGCT	2 cut(s)	98, 197
AoxI	GGCC	2 cut(s)	143, 283
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	247, 260
AspS9I	GGNCC	3 cut(s)	144, 190, 283
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	148
BisI	GCNGC	3 cut(s)	21, 34, 198
BlsI	GCNGC	3 cut(s)	22, 35, 199
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	144, 190, 283
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	146, 147
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 147
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	145, 285
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	145, 285
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	242, 315, 321
BspACI	CCGC	4 cut(s)	21, 33, 73, 156
BspANI	GGCC	2 cut(s)	145, 285
BspLI	GGNNCC	1 cut(s)	192
BspT104I	TTCGAA	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	146, 147
BssMI	GATC	3 cut(s)	242, 315, 321
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	7, 70
BstBI	TTCGAA	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	245, 318, 324
BstMBI	GATC	3 cut(s)	242, 315, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	145, 285
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	144, 190, 283
CviAII	CATG	3 cut(s)	27, 206, 287
CviJI	RGCY	5 cut(s)	36, 98, 145, 197, 285
CviKI_1	RGCY	5 cut(s)	36, 98, 145, 197, 285
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	3 cut(s)	244, 317, 323
DpnII	GATC	3 cut(s)	242, 315, 321
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	7, 70
EarI	CTCTTC	2 cut(s)	7, 70
Eco47I	GGWCC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	30, 209, 290
FaiI	YATR	5 cut(s)	28, 95, 161, 207, 288
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	26, 205, 286
Fnu4HI	GCNGC	3 cut(s)	21, 34, 198
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	21, 34, 198
GluI	GCNGC	3 cut(s)	21, 34, 198
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	145, 285
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	3 cut(s)	30, 209, 290
HinfI	GANTC	2 cut(s)	182, 215
HpaII	CCGG	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	30, 209, 290
Kzo9I	GATC	3 cut(s)	242, 315, 321
LpnPI	CCDG	5 cut(s)	59, 133, 160, 207, 306
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	209
MalI	GATC	3 cut(s)	244, 317, 323
MboI	GATC	3 cut(s)	242, 315, 321
MboII	GAAGA	2 cut(s)	24, 57
MluCI	AATT	2 cut(s)	247, 260
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	7 cut(s)	73, 100, 106, 109, 166, 172, 322
MseI	TTAA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	242, 315, 321
NlaIII	CATG	3 cut(s)	30, 209, 290
NlaIV	GGNNCC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	68
PasI	CCCWGGG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	22, 35, 199
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	3 cut(s)	144, 190, 283
PspPPI	RGGWCCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	21, 34, 198
Sau3AI	GATC	3 cut(s)	242, 315, 321
Sau96I	GGNCC	3 cut(s)	144, 190, 283
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	5 cut(s)	100, 111, 177, 192, 199
SfaNI	GCATC	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	2 cut(s)	247, 260
SsiI	CCGC	4 cut(s)	21, 33, 73, 156
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	68, 177, 314
TasI	AATT	2 cut(s)	247, 260
TauI	GCSGC	2 cut(s)	23, 36
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	2 cut(s)	247, 260
XceI	RCATGY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.