Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Reverse (-)

61212959 .. 61214774

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCGTGGACTATCTTCTCTCAACCCAGTTGGACCTGGACCTTGGAAACTATGAGCGATTCCTAGAAATCAACTTGACCCGTGATAACAATATTTCTACCGGAATGATTTACCAGGTTGTCCCTCACATCACAGATGCTATCCAAGACTGGATTAAGCGTGTAGCATATATACTAGTTGATGGCAAGTCAGGCCCTGCTGAGATGTCTACAATGATCTTATATCCCGTTGAGTTCTTTTCTAGTGATGCTGAGAAATTTGCAGAAGAATGTCCTTGTTGTACTGGTTGTAGATCGGGTCGCATCATTTGCCATGTACCTTGGTCTTGTGATTTTGGCTTGAGGTCTGCTACTGTGCCTATCTATCACATTCAAAGGGCAAAACACTTCCTTTTATTACCGTTGAAGAAGGTACTTGCAGGTCTTGGGTTCTCTTTTATAGTGTTCTGTGATTCATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

154

Amino Acids

17.4

Weight (kDa)

5.47

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	10 - 41	1e-08	CTP synthase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	3 cut(s)	283, 318, 414
AgsI	TTSAA	2 cut(s)	374, 406
AhlI	ACTAGT	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	36, 114
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	3, 193
ApoI	RAATTY	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	34, 40, 194
AvaII	GGWCC	2 cut(s)	34, 40
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	38, 116
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	3 cut(s)	65, 176, 243
BfuAI	ACCTGC	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	38, 116
Bme18I	GGWCC	2 cut(s)	34, 40
BmgT120I	GGNCC	3 cut(s)	34, 40, 194
BmrFI	CCNGG	2 cut(s)	38, 116
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	127, 238, 312
BmuI	ACTGGG	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	6, 43, 320
BsaWI	WCCGGW	1 cut(s)	101
Bse1I	ACTGG	3 cut(s)	28, 155, 289
BseBI	CCWGG	2 cut(s)	38, 116
BseDI	CCNNGG	3 cut(s)	6, 43, 320
BseMII	CTCAG	2 cut(s)	192, 243
BseNI	ACTGG	3 cut(s)	28, 155, 289
BshFI	GGCC	2 cut(s)	5, 195
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	5, 195
Bsp143I	GATC	2 cut(s)	216, 293
BspANI	GGCC	2 cut(s)	5, 195
BspCNI	CTCAG	2 cut(s)	193, 244
BspMI	ACCTGC	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	28, 155, 289
BssECI	CCNNGG	3 cut(s)	6, 43, 320
BssMI	GATC	2 cut(s)	216, 293
BssT1I	CCWWGG	2 cut(s)	43, 320
Bst2UI	CCWGG	2 cut(s)	38, 116
Bst4CI	ACNGT	2 cut(s)	355, 402
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	201, 252
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	219, 296
BstMBI	GATC	2 cut(s)	216, 293
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 309
BstNI	CCWGG	2 cut(s)	38, 116
BstSCI	CCNGG	2 cut(s)	36, 114
BsuRI	GGCC	2 cut(s)	5, 195
BtgI	CCRYGG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	3 cut(s)	34, 40, 194
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	282, 317, 413
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	3 cut(s)	5, 195, 339
CviKI_1	RGCY	3 cut(s)	5, 195, 339
CviQI	GTAC	3 cut(s)	282, 317, 413
DdeI	CTNAG	2 cut(s)	201, 252
DpnI	GATC	2 cut(s)	218, 295
DpnII	GATC	2 cut(s)	216, 293
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	43, 320
Eco47I	GGWCC	2 cut(s)	34, 40
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	36, 114
EcoT14I	CCWWGG	2 cut(s)	43, 320
ErhI	CCWWGG	2 cut(s)	43, 320
FaeI	CATG	1 cut(s)	317
FaiI	YATR	7 cut(s)	54, 169, 171, 173, 223, 315, 440
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	209
FspBI	CTAG	3 cut(s)	65, 176, 243
HaeIII	GGCC	2 cut(s)	5, 195
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	1 cut(s)	317
HinfI	GANTC	2 cut(s)	60, 452
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	2 cut(s)	10, 210
Hpy8I	GTNNAC	2 cut(s)	10, 210
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	355, 402
HpyCH4V	TGCA	2 cut(s)	263, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 309
HpyF3I	CTNAG	2 cut(s)	201, 252
Hsp92II	CATG	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	216, 293
LweI	GCATC	3 cut(s)	127, 238, 312
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	3 cut(s)	65, 176, 243
MalI	GATC	2 cut(s)	218, 295
MboI	GATC	2 cut(s)	216, 293
MboII	GAAGA	3 cut(s)	8, 278, 418
MluCI	AATT	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	2 cut(s)	135, 336
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	38, 116
MvaI	CCWGG	2 cut(s)	38, 116
MwoI	GCNNNNNNNGC	2 cut(s)	192, 309
NdeII	GATC	2 cut(s)	216, 293
NlaIII	CATG	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	60, 452
Psp6I	CCWGG	2 cut(s)	36, 114
PspGI	CCWGG	2 cut(s)	36, 114
PspPI	GGNCC	3 cut(s)	34, 40, 194
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	3 cut(s)	283, 318, 414
RsaNI	GTAC	3 cut(s)	282, 317, 413
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	216, 293
Sau96I	GGNCC	3 cut(s)	34, 40, 194
ScrFI	CCNGG	2 cut(s)	38, 116
SetI	ASST	7 cut(s)	39, 45, 120, 322, 347, 414, 424
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	127, 238, 312
SinI	GGWCC	2 cut(s)	34, 40
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	1 cut(s)	257
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	3 cut(s)	65, 176, 243
StyD4I	CCNGG	2 cut(s)	36, 114
StyI	CCWWGG	2 cut(s)	43, 320
TaaI	ACNGT	2 cut(s)	355, 402
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	60, 452
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	34, 40
XapI	RAATTY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	3 cut(s)	65, 176, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.