Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000361.1

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Reverse (-)

40215 .. 42482

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000361.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atggatgatagaagagttgccggtacatgtaccggcttcgtttctctgtggttgcgacgaccctcttcgaagcggtggagattgcgtctggtcatagctgaaggtgaggtggaggaaggtggtcggggattcggtcgggtttggccctgggtttgcgtgatggctgacggagcagtgaacgtacttcactatacctatgttggtgataagacggtccgcgagttctggaggagaatgctcccaggatggcatacccaatccttgttgctgcatgaaaaatactatcatctgttgcactatggcactcataagcgtgtaaggctaactgttgaaggtaaccctcgaagacgatggcgtgtgcgcctatttcgtgatggagctggcggcttttggttgacggaaggatgggtcaatttctatgaggacaacaatcttggcaacaatgagttagttcagtttacttttgacgaggaaaccggtaatgctaatgttaccattgttgttccggtggatgaagtcgttaactatgatttgaacacagatgatgaaatgggttgtgacatatatgataatcaatccatgcaactcatgcgtcctgttggggttgaatttaaaactcacgttcgtcgtaaagatttgaacattccgtcgtctattgtcaggcgttacctgaaggtggactactataacgttaccatcatagaccctgaactccagcactggacagtgggtgcagttccttccaatactaatgtcaagctttctagtgggtggcctgctattgtgaatagtaaggtgattaacgaaggtgatcatgtccaattggtctatgtgggtgagaagactttcaagatattcaaactcaattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

290

Amino Acids

33.8

Weight (kDa)

8.34

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	73, 217, 384
AclI	AACGTT	1 cut(s)	690
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	2 cut(s)	120, 692
AfaI	GTAC	3 cut(s)	25, 31, 183
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	26
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	6 cut(s)	332, 535, 608, 640, 850, 859
AjnI	CCWGG	2 cut(s)	146, 241
AluBI	AGCT	3 cut(s)	98, 380, 760
AluI	AGCT	3 cut(s)	98, 380, 760
AoxI	GGCC	2 cut(s)	143, 773
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	608
AsiGI	ACCGGT	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	144, 214
AsuHPI	GGTGA	5 cut(s)	116, 215, 808, 821, 848
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BbsI	GAAGAC	2 cut(s)	352, 848
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	6 cut(s)	154, 240, 345, 368, 399, 704
BciT130I	CCWGG	2 cut(s)	148, 243
BclI	TGATCA	1 cut(s)	811
BfaI	CTAG	1 cut(s)	765
BisI	GCNGC	2 cut(s)	269, 385
BlsI	GCNGC	2 cut(s)	270, 386
Bme1390I	CCNGG	2 cut(s)	148, 243
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	144, 214
BmrFI	CCNGG	2 cut(s)	148, 243
BpiI	GAAGAC	2 cut(s)	352, 848
BpmI	CTGGAG	2 cut(s)	247, 698
Bpu14I	TTCGAA	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	146, 147, 241
BsaWI	WCCGGW	2 cut(s)	476, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse118I	RCCGGY	3 cut(s)	20, 32, 476
Bse1I	ACTGG	1 cut(s)	725
BseBI	CCWGG	2 cut(s)	148, 243
BseDI	CCNNGG	3 cut(s)	146, 147, 241
BseGI	GGATG	4 cut(s)	10, 251, 410, 517
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	145, 775
BshTI	ACCGGT	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	4 cut(s)	21, 33, 477, 506
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	145, 775
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	811
BspACI	CCGC	3 cut(s)	73, 217, 384
BspANI	GGCC	2 cut(s)	145, 775
BspFNI	CGCG	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	68
BsrFI	RCCGGY	3 cut(s)	20, 32, 476
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	3 cut(s)	20, 32, 476
BssECI	CCNNGG	3 cut(s)	146, 147, 241
BssMI	GATC	1 cut(s)	811
Bst2UI	CCWGG	2 cut(s)	148, 243
Bst4CI	ACNGT	3 cut(s)	214, 328, 727
Bst6I	CTCTTC	2 cut(s)	7, 70
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	382, 777
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	4 cut(s)	10, 251, 410, 517
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	814
BstMBI	GATC	1 cut(s)	811
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 319, 589
BstNI	CCWGG	2 cut(s)	148, 243
BstNSI	RCATGY	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	146, 241
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	2 cut(s)	352, 848
BsuRI	GGCC	2 cut(s)	145, 775
BtsCI	GGATG	4 cut(s)	10, 251, 410, 517
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	180, 718, 732
Cac8I	GCNNGC	2 cut(s)	382, 777
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	3 cut(s)	20, 32, 476
Cfr13I	GGNCC	2 cut(s)	144, 214
CpoI	CGGWCCG	1 cut(s)	214
CseI	GACGC	2 cut(s)	74, 581
Csp6I	GTAC	3 cut(s)	24, 30, 182
CspAI	ACCGGT	1 cut(s)	476
CspI	CGGWCCG	1 cut(s)	214
CviAII	CATG	5 cut(s)	27, 272, 580, 589, 815
CviJI	RGCY	9 cut(s)	36, 98, 145, 164, 322, 380, 387, 760, 775
CviKI_1	RGCY	9 cut(s)	36, 98, 145, 164, 322, 380, 387, 760, 775
CviQI	GTAC	3 cut(s)	24, 30, 182
DpnI	GATC	1 cut(s)	813
DpnII	GATC	1 cut(s)	811
DraI	TTTAAA	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	7, 70
EarI	CTCTTC	2 cut(s)	7, 70
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	120, 692
Eco91I	GGTNACC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	146, 241
FaeI	CATG	5 cut(s)	30, 275, 583, 592, 818
FatI	CATG	5 cut(s)	26, 271, 579, 588, 814
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	2 cut(s)	269, 385
FokI	GGATG	4 cut(s)	17, 258, 417, 524
Fsp4HI	GCNGC	2 cut(s)	269, 385
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	269, 385
GsuI	CTGGAG	2 cut(s)	247, 698
HaeIII	GGCC	2 cut(s)	145, 775
HapII	CCGG	4 cut(s)	21, 33, 477, 506
HgaI	GACGC	2 cut(s)	74, 581
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	30, 275, 583, 592, 818
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	2 cut(s)	396, 523
HindII	GTYRAC	2 cut(s)	396, 523
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	1 cut(s)	129
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	4 cut(s)	21, 33, 477, 506
HphI	GGTGA	5 cut(s)	116, 215, 808, 821, 848
Hpy166II	GTNNAC	5 cut(s)	178, 396, 459, 523, 679
Hpy188III	TCNNGA	3 cut(s)	226, 371, 850
Hpy8I	GTNNAC	5 cut(s)	178, 396, 459, 523, 679
Hpy99I	CGWCG	3 cut(s)	60, 630, 652
HpyAV	CCTTC	7 cut(s)	95, 110, 326, 395, 667, 750, 800
HpyCH4III	ACNGT	3 cut(s)	214, 328, 727
HpyCH4IV	ACGT	3 cut(s)	180, 621, 690
HpyCH4V	TGCA	4 cut(s)	271, 295, 583, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 319, 589
HpySE526I	ACGT	3 cut(s)	180, 621, 690
Hsp92II	CATG	5 cut(s)	30, 275, 583, 592, 818
HspAI	GCGC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	811
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	811
LmnI	GCTCC	3 cut(s)	170, 243, 377
Lsp1109I	GCAGC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	3 cut(s)	180, 621, 690
MaeIII	GTNAC	5 cut(s)	335, 490, 557, 665, 691
MalI	GATC	1 cut(s)	813
MboI	GATC	1 cut(s)	811
MboII	GAAGA	4 cut(s)	24, 57, 357, 853
MfeI	CAATTG	1 cut(s)	821
MluCI	AATT	4 cut(s)	412, 608, 821, 865
MnlI	CCTC	7 cut(s)	73, 100, 106, 222, 351, 415, 463
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	3 cut(s)	522, 612, 801
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	4 cut(s)	21, 33, 477, 506
MspR9I	CCNGG	2 cut(s)	148, 243
MunI	CAATTG	1 cut(s)	821
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	148, 243
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	170, 319, 589
NdeII	GATC	1 cut(s)	811
NlaIII	CATG	5 cut(s)	30, 275, 583, 592, 818
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	68
PasI	CCCWGGG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	26
PctI	GAATGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	270, 386
PscI	ACATGT	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	146, 241
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	146, 241
PspPI	GGNCC	2 cut(s)	144, 214
RsaI	GTAC	3 cut(s)	25, 31, 183
RsaNI	GTAC	3 cut(s)	24, 30, 182
RseI	CAYNNNNRTG	1 cut(s)	312
Rsr2I	CGGWCCG	1 cut(s)	214
RsrII	CGGWCCG	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	522, 612, 801
SatI	GCNGC	2 cut(s)	269, 385
Sau3AI	GATC	1 cut(s)	811
Sau96I	GGNCC	2 cut(s)	144, 214
ScrFI	CCNGG	2 cut(s)	148, 243
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	412, 608, 821, 865
SsiI	CCGC	3 cut(s)	73, 217, 384
SspMI	CTAG	1 cut(s)	765
StyD4I	CCNGG	2 cut(s)	146, 241
TaaI	ACNGT	3 cut(s)	214, 328, 727
TaiI	ACGT	3 cut(s)	183, 624, 693
TaqI	TCGA	2 cut(s)	68, 343
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	412, 608, 821, 865
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	3 cut(s)	522, 612, 801
Tru9I	TTAA	3 cut(s)	522, 612, 801
TscAI	CASTG	3 cut(s)	180, 725, 732
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	288, 528, 561
TspGWI	ACGGA	3 cut(s)	183, 413, 636
TspRI	CASTG	3 cut(s)	180, 725, 732
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	608
XceI	RCATGY	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.