Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Reverse (-)

44005391 .. 44006499

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTCCAAGTGTTCAACAGACCTCAGATTCCTCCTCCAAATAAACAGACCTCAGATTCAACATTTAAATTCCTAAAGCCATATATTCTTAATCAAACACAATCAAGATTGACCGTCGACTTCTTGGTTCGAATGGTTCTTGATTCCGGCGACGAGGCAGTAGCCGTACGAGCGGCCGCGTGTGCCTTCTTCGAAGACCTTGACGATGATCCCCTTGCAGCCGCCGTAGTGACCTTGCAGGAGGATGGAGAGGAGGTTCAGACTGAGCTGACCGGTGCGAAGACGGTAAGCGACGGCAACTGGGAGATGATGGATTTGTTGCTGGATCGGAGCGGTCTCGATGAAGTTGAGAGACTGACCGAGTCTTCTGCCACGCTTGAAACTGCTGGCGAGGAGCAGGGGCACTCAGAGTGTGTTGTAGTGGTTTCTGAGGAGGCTCACCAAGAGCCGGCGGTGATGATGTCTGAGGGTAGGGCTTCAGACTCTCCACTGGTTATAGGAGAGGGAGAGGTGGTGACTGCGATGGCAGTTGTTCTTGCGGCGCTGGCTATGACACCTCCCACTAATAAACGTGATAAAATTTCCTTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.35

Weight (kDa)

4.21

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	173, 333
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	179
AciI	CCGC	6 cut(s)	173, 177, 222, 333, 452, 539
AclWI	GGATC	2 cut(s)	203, 333
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	68, 579
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	16, 60, 380
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	341, 346
AlwI	GGATC	2 cut(s)	203, 333
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	68, 579
AsiGI	ACCGGT	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	431, 466, 526
AsuII	TTCGAA	2 cut(s)	130, 192
BaeGI	GKGCMC	1 cut(s)	405
BbsI	GAAGAC	3 cut(s)	201, 287, 357
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	3 cut(s)	239, 304, 517
BceAI	ACGGC	3 cut(s)	149, 209, 310
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcoDI	GTCTC	2 cut(s)	341, 346
BfoI	RGCGCY	1 cut(s)	545
BisI	GCNGC	5 cut(s)	174, 177, 219, 222, 540
BlsI	GCNGC	5 cut(s)	175, 178, 220, 223, 541
BmrI	ACTGGG	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	3 cut(s)	201, 287, 357
Bpu14I	TTCGAA	2 cut(s)	130, 192
BsaI	GGTCTC	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	2 cut(s)	272, 448
Bse1I	ACTGG	2 cut(s)	305, 495
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	6 cut(s)	38, 66, 255, 420, 420, 456
BseNI	ACTGG	2 cut(s)	305, 495
BseRI	GAGGAG	4 cut(s)	24, 266, 407, 446
BseSI	GKGCMC	1 cut(s)	405
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	147, 273, 449
BsiWI	CGTACG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	341, 346
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	341
Bsp119I	TTCGAA	2 cut(s)	130, 192
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	208, 325
BspACI	CCGC	6 cut(s)	173, 177, 222, 333, 452, 539
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	6 cut(s)	37, 65, 256, 419, 421, 457
BspFNI	CGCG	1 cut(s)	179
BspPI	GGATC	2 cut(s)	203, 333
BspT104I	TTCGAA	2 cut(s)	130, 192
BspTNI	GGTCTC	1 cut(s)	341
BsrBI	CCGCTC	2 cut(s)	173, 333
BsrFI	RCCGGY	2 cut(s)	272, 448
BsrI	ACTGG	2 cut(s)	305, 495
BssAI	RCCGGY	2 cut(s)	272, 448
BssMI	GATC	2 cut(s)	208, 325
Bst4CI	ACNGT	2 cut(s)	115, 286
BstBI	TTCGAA	2 cut(s)	130, 192
BstC8I	GCNNGC	3 cut(s)	388, 450, 546
BstDEI	CTNAG	6 cut(s)	24, 52, 264, 406, 429, 465
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	211, 328
BstMAI	GTCTC	2 cut(s)	341, 346
BstMBI	GATC	2 cut(s)	208, 325
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 182, 545
BstSLI	GKGCMC	1 cut(s)	405
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	3 cut(s)	201, 287, 357
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	3 cut(s)	388, 450, 546
CciNI	GCGGCCGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	2 cut(s)	272, 448
Csp6I	GTAC	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	272
CviJI	RGCY	9 cut(s)	79, 164, 176, 221, 268, 437, 448, 476, 548
CviKI_1	RGCY	9 cut(s)	79, 164, 176, 221, 268, 437, 448, 476, 548
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	6 cut(s)	24, 52, 264, 406, 429, 465
DpnI	GATC	2 cut(s)	210, 327
DpnII	GATC	2 cut(s)	208, 325
DraI	TTTAAA	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	341
Eco52I	CGGCCG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	462
FaiI	YATR	4 cut(s)	82, 84, 497, 551
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	5 cut(s)	174, 177, 219, 222, 540
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	174, 177, 219, 222, 540
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	5 cut(s)	174, 177, 219, 222, 540
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	3 cut(s)	147, 273, 449
HhaI	GCGC	1 cut(s)	544
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	5 cut(s)	28, 56, 143, 362, 482
HpaII	CCGG	3 cut(s)	147, 273, 449
HphI	GGTGA	3 cut(s)	431, 466, 526
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	8 cut(s)	27, 55, 261, 330, 409, 430, 466, 481
Hpy188III	TCNNGA	3 cut(s)	105, 140, 338
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	3 cut(s)	119, 155, 296
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	115, 286
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	2 cut(s)	218, 238
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 182, 545
HpyF3I	CTNAG	6 cut(s)	24, 52, 264, 406, 429, 465
HpySE526I	ACGT	1 cut(s)	571
HspAI	GCGC	1 cut(s)	542
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	208, 325
LmnI	GCTCC	2 cut(s)	330, 394
Lsp1109I	GCAGC	1 cut(s)	230
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	2 cut(s)	229, 514
MalI	GATC	2 cut(s)	210, 327
MbiI	CCGCTC	2 cut(s)	173, 333
MboI	GATC	2 cut(s)	208, 325
MboII	GAAGA	4 cut(s)	181, 206, 292, 357
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	2 cut(s)	68, 579
MlyI	GAGTC	2 cut(s)	371, 476
MroNI	GCCGGC	1 cut(s)	448
MseI	TTAA	2 cut(s)	66, 90
MspI	CCGG	3 cut(s)	147, 273, 449
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	170, 182, 545
NaeI	GCCGGC	1 cut(s)	450
NdeII	GATC	2 cut(s)	208, 325
NgoMIV	GCCGGC	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	229, 514
NotI	GCGGCCGC	1 cut(s)	174
NspV	TTCGAA	2 cut(s)	130, 192
PdiI	GCCGGC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	28, 56, 143
Pfl23II	CGTACG	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	361
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	175, 178, 220, 223, 541
PleI	GAGTC	2 cut(s)	370, 476
PpsI	GAGTC	2 cut(s)	370, 476
PspLI	CGTACG	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	66, 90
SatI	GCNGC	5 cut(s)	174, 177, 219, 222, 540
Sau3AI	GATC	2 cut(s)	208, 325
SchI	GAGTC	2 cut(s)	371, 476
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	9 cut(s)	25, 53, 201, 236, 258, 270, 513, 559, 574
SfuI	TTCGAA	2 cut(s)	130, 192
SmiI	ATTTAAAT	1 cut(s)	67
Sse9I	AATT	2 cut(s)	68, 579
SsiI	CCGC	6 cut(s)	173, 177, 222, 333, 452, 539
SwaI	ATTTAAAT	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	115, 286
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	4 cut(s)	117, 130, 192, 339
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	2 cut(s)	68, 579
TauI	GCSGC	4 cut(s)	176, 179, 224, 542
TfiI	GAWTC	3 cut(s)	28, 56, 143
Tru1I	TTAA	2 cut(s)	66, 90
Tru9I	TTAA	2 cut(s)	66, 90
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	229, 514
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	2 cut(s)	229, 514
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	68, 579
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.