Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005132.1

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Forward (+)

139056 .. 141505

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005132.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgttcggcaatgtttattaccactttccatctttcccaattaccttggccgaagggaacccgacaaatccccaaacatttgatagcggcatattcgacattaggcacatgcagcactatcttgacccatggtcaatagggttcatatctgaggaccagcggaaccgtgttgctttagaaatagtacagagtccccggaatgaacatcgtcgtgttgtcctagccgctgcagttggtgtttcaattggaagcacgcatatgggtgcgaaaaatgcatttagtccaccaacgagacgaaaatgccgtagtcatcgaaagtggcgtgatcgtactatgagacgatgggttgtgcggttatttcgtgatgaagctagcagcttttggttgagggaaggatgggtcagattctatgaggacaacaatcttggcaacaatgagttagttgagttcatttttgacgagaaaaccggtaatgctaatgttaccattgttgttccggtggatgaagtagttaactatgctttgaacaccgatgatgagatgggttgtgacatttatgataatcaagccatgcaactcatgcggcctgttgtggttcttttcattgtatttcgagggttattgtatatttatctggctgcaattccttccaatactaatgtcaagctttctaagaggtggcctgctattgtgaaaagtaagatgattaacgaaggtgaccatgtccagttggtctatgtgggtgagaagactttcaagatattcaaactcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

258

Amino Acids

29.95

Weight (kDa)

9.03

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	87, 160, 225, 352, 583
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	2 cut(s)	186, 331
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	243, 526, 757, 766
AhdI	GACNNNNNGTC	1 cut(s)	130
AluBI	AGCT	3 cut(s)	371, 378, 667
AluI	AGCT	3 cut(s)	371, 378, 667
Alw26I	GTCTC	2 cut(s)	286, 331
AoxI	GGCC	3 cut(s)	48, 584, 680
ApeKI	GCWGC	4 cut(s)	112, 227, 375, 638
AsiGI	ACCGGT	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	728, 755
AsuNHI	GCTAGC	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	755
BbvI	GCAGC	4 cut(s)	124, 214, 387, 625
BccI	CCATC	4 cut(s)	37, 336, 390, 535
BceAI	ACGGC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	286, 331
BfaI	CTAG	2 cut(s)	221, 372
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	7 cut(s)	88, 113, 225, 228, 376, 584, 639
BlsI	GCNGC	7 cut(s)	89, 114, 226, 229, 377, 585, 640
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	154
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	59, 164
BmrFI	CCNGG	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	45, 128, 194
BsaWI	WCCGGW	2 cut(s)	467, 496
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	727
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	45, 128, 194
BseGI	GGATG	2 cut(s)	401, 508
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	727
BseXI	GCAGC	4 cut(s)	124, 214, 387, 625
BshFI	GGCC	3 cut(s)	50, 586, 682
BshTI	ACCGGT	1 cut(s)	467
BsiSI	CCGG	3 cut(s)	196, 468, 497
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	286, 331
BsmBI	CGTCTC	2 cut(s)	286, 331
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	50, 586, 682
Bsp143I	GATC	1 cut(s)	325
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	5 cut(s)	87, 160, 225, 352, 583
BspANI	GGCC	3 cut(s)	50, 586, 682
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	59, 164
BspMAI	CTGCAG	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	727
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	45, 128, 194
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	2 cut(s)	45, 128
Bst4CI	ACNGT	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstC8I	GCNNGC	3 cut(s)	254, 373, 684
BstDEI	CTNAG	2 cut(s)	150, 672
BstDSI	CCRYGG	1 cut(s)	128
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	2 cut(s)	401, 508
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	286, 331
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 272, 580
BstNSI	RCATGY	1 cut(s)	112
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	124, 214, 387, 625
BstV2I	GAAGAC	1 cut(s)	755
BsuRI	GGCC	3 cut(s)	50, 586, 682
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	401, 508
Cac8I	GCNNGC	3 cut(s)	254, 373, 684
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	185, 330
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	5 cut(s)	109, 129, 571, 580, 722
CviJI	RGCY	9 cut(s)	50, 224, 371, 378, 569, 586, 638, 667, 682
CviKI_1	RGCY	9 cut(s)	50, 224, 371, 378, 569, 586, 638, 667, 682
CviQI	GTAC	2 cut(s)	185, 330
DdeI	CTNAG	2 cut(s)	150, 672
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	45, 128
Eco47I	GGWCC	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	45, 128
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	45, 128
Esp3I	CGTCTC	2 cut(s)	286, 331
FaeI	CATG	5 cut(s)	112, 132, 574, 583, 725
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	108, 128, 570, 579, 721
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	7 cut(s)	88, 113, 225, 228, 376, 584, 639
FokI	GGATG	2 cut(s)	408, 515
Fsp4HI	GCNGC	7 cut(s)	88, 113, 225, 228, 376, 584, 639
FspBI	CTAG	2 cut(s)	221, 372
GluI	GCNGC	7 cut(s)	88, 113, 225, 228, 376, 584, 639
HaeIII	GGCC	3 cut(s)	50, 586, 682
HapII	CCGG	3 cut(s)	196, 468, 497
Hin1II	CATG	5 cut(s)	112, 132, 574, 583, 725
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	2 cut(s)	190, 405
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	3 cut(s)	196, 468, 497
HphI	GGTGA	2 cut(s)	728, 755
Hpy166II	GTNNAC	2 cut(s)	284, 514
Hpy188I	TCNGA	2 cut(s)	151, 404
Hpy188III	TCNNGA	3 cut(s)	122, 362, 757
Hpy8I	GTNNAC	2 cut(s)	284, 514
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	4 cut(s)	47, 386, 657, 707
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	112, 230, 275, 574, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 272, 580
HpyF3I	CTNAG	2 cut(s)	150, 672
Hsp92II	CATG	5 cut(s)	112, 132, 574, 583, 725
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	170, 209, 481, 510, 600, 620, 696, 740
Lsp1109I	GCAGC	4 cut(s)	124, 214, 387, 625
MaeI	CTAG	2 cut(s)	221, 372
MaeIII	GTNAC	3 cut(s)	481, 548, 716
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	760
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	4 cut(s)	39, 243, 642, 772
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	145, 381, 406, 608, 669
Mph1103I	ATGCAT	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	3 cut(s)	513, 708, 775
MslI	CAYNNNNRTG	3 cut(s)	210, 257, 261
MspA1I	CMGCKG	2 cut(s)	160, 227
MspI	CCGG	3 cut(s)	196, 468, 497
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	112, 272, 580
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	325
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	5 cut(s)	112, 132, 574, 583, 725
NlaIV	GGNNCC	2 cut(s)	59, 164
NmuCI	GTSAC	2 cut(s)	548, 716
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	301, 319
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	722
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	7 cut(s)	89, 114, 226, 229, 377, 585, 640
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	716
PspN4I	GGNNCC	2 cut(s)	59, 164
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	722
RsaI	GTAC	2 cut(s)	186, 331
RsaNI	GTAC	2 cut(s)	185, 330
RseI	CAYNNNNRTG	3 cut(s)	210, 257, 261
SaqAI	TTAA	3 cut(s)	513, 708, 775
SatI	GCNGC	7 cut(s)	88, 113, 225, 228, 376, 584, 639
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	6 cut(s)	47, 373, 380, 669, 680, 718
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	3 cut(s)	210, 257, 261
Sse9I	AATT	4 cut(s)	39, 243, 642, 772
SsiI	CCGC	5 cut(s)	87, 160, 225, 352, 583
SspMI	CTAG	2 cut(s)	221, 372
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	45, 128
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	96, 313, 613
TasI	AATT	4 cut(s)	39, 243, 642, 772
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	3 cut(s)	90, 227, 586
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	3 cut(s)	513, 708, 775
Tru9I	TTAA	3 cut(s)	513, 708, 775
TseFI	GTSAC	2 cut(s)	548, 716
TseI	GCWGC	4 cut(s)	112, 227, 375, 638
Tsp45I	GTSAC	2 cut(s)	548, 716
TspDTI	ATGAA	6 cut(s)	133, 216, 381, 439, 519, 592
Tth111I	GACNNNGTC	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	2 cut(s)	221, 372
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.