Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003488

Physical Location & Seq

Genomic Coordinates Forward (+)

42458734 .. 42461678

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTTGGACCTGGACCTTGGAAACTATGAGCGATTCCTAGAAATCAAGCTGACCCGTGATAATAAGATTTCTACCGGAATGATTTACCAGGTTGTCCCTCACATCACGGATGTTATCCAAGAATGGATTAAGCATGTAGCACATATACCGGTTGATGGAAAGTCGGGCCCTGTCGATGTTTGTGTCATAGAGTTTACTCATTTGATTCTCAAGTTAACTATCTGTTTTTGTATTAGTAGTTTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

82

Amino Acids

9.38

Weight (kDa)

5.67

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	3 - 32	3.8e-08	CTP synthase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003488)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465261 RchiOBHm_Chr4g0397281 RchiOBHm_Chr4g0432341
rosa_laevigata	RLG00000002093 RLG00000027189 RLG00000035058
rosa_multiflora	Rmu_sc0000361.1_g000006 Rmu_sc0005132.1_g000040
rosa_roxburghii	Rroxscaffold_2G00116760 Rroxscaffold_3G00229200 Rroxscaffold_5G00381150 Rroxscaffold_6G00421220
rosa_rugosa	Rorug04G0065800 Rorug04G0330000 Rorug04G0330200
rosa_samantha	Rh1AG228200 Rh2AG526900 Rh2BG564700 Rh2CG177600 Rh3AG001900 Rh3CG001600 Rh3CG139100 Rh3CG275700 Rh3DG001700 Rh3DG138000 Rh3DG141500 Rh4AG093800 Rh4BG371700 Rh4CG102000 Rh4DG316600 Rh5BG432100 Rh5CG455500 Rh5DG386400 Rh6AG195600 Rh6CG200200 Rh6CG200300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	9, 87
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AoxI	GGCC	1 cut(s)	166
ApaI	GGGCCC	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	4 cut(s)	7, 13, 166, 167
AvaII	GGWCC	2 cut(s)	7, 13
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	170
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	11, 89
BfaI	CTAG	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	11, 89
Bme18I	GGWCC	2 cut(s)	7, 13
BmgT120I	GGNCC	4 cut(s)	7, 13, 166, 167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	11, 89
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	2 cut(s)	74, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	11, 89
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	75, 149
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	11, 89
BstF5I	GGATG	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	11, 89
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	9, 87
BstSLI	GKGCMC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	7, 13, 166, 167
CsiI	ACCWGGT	1 cut(s)	87
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	2 cut(s)	49, 168
CviKI_1	RGCY	2 cut(s)	49, 168
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	7, 13
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	9, 87
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	27, 135, 144, 146, 188
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	133
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	75, 149
Hin1II	CATG	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	2 cut(s)	33, 205
HpaI	GTTAAC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	75, 149
Hpy166II	GTNNAC	2 cut(s)	195, 216
Hpy8I	GTNNAC	2 cut(s)	195, 216
Hsp92II	CATG	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	216
LpnPI	CCDG	6 cut(s)	23, 74, 88, 101, 162, 183
MabI	ACCWGGT	1 cut(s)	87
MaeI	CTAG	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	170
MnlI	CCTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	129, 215, 247
MspI	CCGG	2 cut(s)	75, 149
MspR9I	CCNGG	2 cut(s)	11, 89
MvaI	CCWGG	2 cut(s)	11, 89
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	33, 205
PinAI	ACCGGT	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	9, 87
PspGI	CCWGG	2 cut(s)	9, 87
PspN4I	GGNNCC	1 cut(s)	168
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	4 cut(s)	7, 13, 166, 167
SaqAI	TTAA	3 cut(s)	129, 215, 247
Sau96I	GGNCC	4 cut(s)	7, 13, 166, 167
ScrFI	CCNGG	2 cut(s)	11, 89
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	4 cut(s)	12, 18, 51, 93
SexAI	ACCWGGT	1 cut(s)	87
SinI	GGWCC	2 cut(s)	7, 13
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	9, 87
StyI	CCWWGG	1 cut(s)	16
TaqI	TCGA	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	33, 205
Tru1I	TTAA	3 cut(s)	129, 215, 247
Tru9I	TTAA	3 cut(s)	129, 215, 247
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	7, 13
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.