Rh5DG386400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003488
Physical Location & Seq
Reverse (-)
59778820 .. 59780302
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG386400.1

Sequence Viewer

Length: 300 bp
ATGGATGATAGAAGAGTTGCCGCTACATGTAGCGGCTTCGTTTGCCTGTGGTTGCGACGACCCTCTTCGAAGCGGTGGAGATTGCGTGTGGTCATAGCTGAAAGTGAGGTGGAGGAGGGTGGTCGGGGATTGGGTTGGGTTTGGCCCTGGGTTTGCGGTATATTAAACAATGAGGTCGAGGACTCTAAGGTCCCAGCTGCATCGCATGGGTTTGAATCAAACGGTTTGATTGATAGTGTGAGATCAAATTTTGATTTGGAATTCTGCTATTTGGTAGATTTGGGCCATGAACCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.21

Weight (kDa)

4.99

Isoelectric Point (pI)

67.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AciI CCGC 4 cut(s) 21, 33, 73, 156
AcsI RAATTY 2 cut(s) 247, 260
AfiI CCNNNNNNNGG 1 cut(s) 292
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 2 cut(s) 98, 197
AluI AGCT 2 cut(s) 98, 197
AoxI GGCC 2 cut(s) 143, 283
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 2 cut(s) 247, 260
AspS9I GGNCC 3 cut(s) 144, 190, 283
AsuII TTCGAA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 148
BisI GCNGC 3 cut(s) 21, 34, 198
BlsI GCNGC 3 cut(s) 22, 35, 199
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 144, 190, 283
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 146, 147
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 146, 147
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 145, 285
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 145, 285
Bsp119I TTCGAA 1 cut(s) 68
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 4 cut(s) 21, 33, 73, 156
BspANI GGCC 2 cut(s) 145, 285
BspLI GGNNCC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 146, 147
BssMI GATC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 7, 70
BstBI TTCGAA 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 145, 285
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 144, 190, 283
CviAII CATG 3 cut(s) 27, 206, 287
CviJI RGCY 5 cut(s) 36, 98, 145, 197, 285
CviKI_1 RGCY 5 cut(s) 36, 98, 145, 197, 285
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 7, 70
EarI CTCTTC 2 cut(s) 7, 70
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 3 cut(s) 30, 209, 290
FaiI YATR 5 cut(s) 28, 95, 161, 207, 288
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 26, 205, 286
Fnu4HI GCNGC 3 cut(s) 21, 34, 198
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 21, 34, 198
GluI GCNGC 3 cut(s) 21, 34, 198
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 145, 285
HapII CCGG 1 cut(s) 293
Hin1II CATG 3 cut(s) 30, 209, 290
HinfI GANTC 2 cut(s) 182, 215
HpaII CCGG 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 3 cut(s) 30, 209, 290
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 4 cut(s) 59, 133, 160, 207
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 209
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 24, 57
MluCI AATT 2 cut(s) 247, 260
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 6 cut(s) 73, 100, 106, 109, 166, 172
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 1 cut(s) 242
NlaIII CATG 3 cut(s) 30, 209, 290
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 1 cut(s) 30
NspV TTCGAA 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 147
PciI ACATGT 1 cut(s) 26
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 3 cut(s) 22, 35, 199
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PpuMI RGGWCCY 1 cut(s) 190
PscI ACATGT 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 3 cut(s) 144, 190, 283
PspPPI RGGWCCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 3 cut(s) 21, 34, 198
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 3 cut(s) 144, 190, 283
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 148
SetI ASST 5 cut(s) 100, 111, 177, 192, 199
SfaNI GCATC 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 68
SgeI CNNG 9 cut(s) 39, 58, 98, 137, 159, 160, 190, 206, 218
SinI GGWCC 1 cut(s) 190
Sse9I AATT 2 cut(s) 247, 260
SsiI CCGC 4 cut(s) 21, 33, 73, 156
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 68, 177
TasI AATT 2 cut(s) 247, 260
TauI GCSGC 2 cut(s) 23, 36
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 2 cut(s) 247, 260
XceI RCATGY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.