pycom07g16720

Phenylalanine ammonia-lyase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
19142173 .. 19144729
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16720.1

Sequence Viewer

Length: 1275 bp
ATGGAACCGGGAAATAACCAAAACGTCAACGAAAACAGCTCCCTGGAGTCGTTTTGCGTAGGGCATGAGAAGGTACTTGCGACACATGACCCATTGAACTGGGGGATGGCAGCTGAAGCACTGAAAGGGAGCCATCTGGACGAGTTCAAACGGATGGTCAACGATTACAGGAAGCCAGTGGTGAAGCTTGGTGGGGAGAGCCTGACGGTGGCTCAGGTGGCTGCGATTGCCTACCATGACGGTGCCAAGGTGGAGCTGTCGGAGGAGAAAAGGGCTGGGGTAAAGGCCAGCAGTGATTGGGTTATGGATAGCATGGGCAAAGGCACAGACAGCTATGGTGTGACCACTGGCTTTGGTGCAACCTCTCATAGGAGAACCAAGCAAGGTGGAGCTCTTCAGAGGGAGCTAATTAGATTCTTGAATGCTGGAATCTTTGGCAGCAACACAGAATCAACCCACATTCTGCCTCACACAGCAACAAGAGCAGCAATGCTGGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGAATTAGATTCGAAATCTTGGAAGCCATCACCAAGTTCCTCAACAACAATGTCACCCCTTGCCTTCCCCTTAGGGGCACAATCACTGCCTCAGGGGACTTGGTTCCGCTCTCGTACATTGCCGGGCTTTTGATAGGCAGGCCAAATTCCAAGTCCACCGGGCCTAATGGCCAAACCCTAACCGCTTCTGATACCTTCAAGCTAGCTGGAATTGATGGTGGGTTCTTTGAGTTGCAGCCAAAGGAAGGGCTTGCATTGGTTAATGGAACTGCAGTTGGGTCTGGTTTGGCTTCTATGGTTCTGTTTGAGGCCAACACACAAGCACTTTTATCAGAAGTGTTGTCGGCAATTTTCGCCGAAGTAATGCAAGGAAAGCCTGAGTTTACAGATCACTTGACTCATAAGTTAAAGCACCACCCTGGCCAAATTGAAGCTGCAGCAATAATGGAACACATTTTAGCTGGAAGTGATTATGTAAAAGCAGCTGAAAAGGTGCATGAGATGGACCCTCTTCAGAAGCCAAAGCAGGACCGGTATGCTCTTAGAACATCTCCCCAATGGCTGGGCCCACAGATTGAGGTGATCAGAGCAGCAACGAAGATGATTGAGAGGGAGATCGATCGATGTCTCAAGAAACAAGGCATTACATGGAGGAAACTTTCAGGGCACCCCGATTGGTGTTGCCATGGACAACACCAGATTAGCCATTGCTGCAATTGGAAAGCTTATGTTTGCTCAGTTCTCTGA

Protein Analysis

425

Amino Acids

46.19

Weight (kDa)

7.68

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_aromatic PF00221 68 - 383 2.4e-94 Aromatic amino acid lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 1194
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccBSI CCGCTC 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 527
AciI CCGC 2 cut(s) 635, 711
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 2 cut(s) 697, 949
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 3 cut(s) 135, 380, 1025
AfaI GTAC 2 cut(s) 75, 644
AfiI CCNNNNNNNGG 5 cut(s) 208, 369, 602, 773, 1090
AgeI ACCGGT 1 cut(s) 1059
AgsI TTSAA 5 cut(s) 97, 148, 421, 727, 959
AjnI CCWGG 2 cut(s) 42, 946
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 1160
AlwI GGATC 1 cut(s) 509
Aor13HI TCCGGA 1 cut(s) 527
AoxI GGCC 7 cut(s) 285, 668, 689, 697, 837, 949, 1093
ApaI GGGCCC 1 cut(s) 1097
ApoI RAATTY 1 cut(s) 673
ArsI GACNNNNNNTTYG 4 cut(s) 141, 173, 665, 697
AsiGI ACCGGT 1 cut(s) 1059
AspS9I GGNCC 5 cut(s) 689, 1033, 1057, 1093, 1094
AsuC2I CCSGG 3 cut(s) 9, 652, 688
AsuHPI GGTGA 5 cut(s) 193, 508, 550, 574, 1120
AsuII TTCGAA 1 cut(s) 540
AsuNHI GCTAGC 1 cut(s) 730
AvaII GGWCC 2 cut(s) 1033, 1057
AxyI CCTNAGG 2 cut(s) 599, 619
BaeGI GKGCMC 3 cut(s) 608, 1097, 1197
BalI TGGCCA 2 cut(s) 699, 951
BanI GGYRCC 2 cut(s) 242, 1194
BanII GRGCYC 2 cut(s) 394, 1097
Bbv12I GWGCWC 1 cut(s) 394
BccI CCATC 6 cut(s) 100, 141, 148, 563, 737, 1024
BciT130I CCWGG 2 cut(s) 44, 948
BclI TGATCA 1 cut(s) 1110
BcnI CCSGG 3 cut(s) 9, 652, 688
BcoDI GTCTC 1 cut(s) 1160
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 2 cut(s) 798, 963
Bme1390I CCNGG 5 cut(s) 9, 44, 652, 688, 948
Bme18I GGWCC 2 cut(s) 1033, 1057
BmgT120I GGNCC 5 cut(s) 689, 1033, 1057, 1093, 1094
BmiI GGNNCC 7 cut(s) 6, 131, 244, 633, 1035, 1095, 1196
BmrFI CCNGG 5 cut(s) 9, 44, 652, 688, 948
BmrI ACTGGG 1 cut(s) 109
BmtI GCTAGC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 1142
BpuMI CCSGG 3 cut(s) 9, 652, 688
Bsa29I ATCGAT 2 cut(s) 1146, 1150
BsaJI CCNNGG 5 cut(s) 42, 246, 517, 946, 1213
BsaWI WCCGGW 2 cut(s) 527, 1059
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 369, 602, 773, 1090
Bse118I RCCGGY 1 cut(s) 1059
Bse1I ACTGG 3 cut(s) 104, 176, 352
Bse21I CCTNAGG 2 cut(s) 599, 619
Bse3DI GCAATG 3 cut(s) 495, 645, 1234
BseAI TCCGGA 1 cut(s) 527
BseBI CCWGG 2 cut(s) 44, 948
BseCI ATCGAT 2 cut(s) 1146, 1150
BseDI CCNNGG 5 cut(s) 42, 246, 517, 946, 1213
BseGI GGATG 2 cut(s) 111, 159
BseLI CCNNNNNNNGG 5 cut(s) 208, 369, 602, 773, 1090
BseMI GCAATG 3 cut(s) 495, 645, 1234
BseMII CTCAG 3 cut(s) 227, 633, 897
BseNI ACTGG 3 cut(s) 104, 176, 352
BseRI GAGGAG 2 cut(s) 278, 503
BseSI GKGCMC 3 cut(s) 608, 1097, 1197
BseYI CCCAGC 2 cut(s) 275, 1090
Bsh1285I CGRYCG 1 cut(s) 1150
BshFI GGCC 7 cut(s) 287, 670, 691, 699, 839, 951, 1095
BshNI GGYRCC 2 cut(s) 242, 1194
BshTI ACCGGT 1 cut(s) 1059
BshVI ATCGAT 2 cut(s) 1146, 1150
BsiEI CGRYCG 1 cut(s) 1150
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 5 cut(s) 8, 528, 651, 687, 1060
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 5 cut(s) 208, 369, 602, 773, 1090
BsmAI GTCTC 1 cut(s) 1160
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 7 cut(s) 287, 670, 691, 699, 839, 951, 1095
Bsp119I TTCGAA 1 cut(s) 540
Bsp120I GGGCCC 1 cut(s) 1093
Bsp1286I GDGCHC 4 cut(s) 394, 608, 1097, 1197
Bsp13I TCCGGA 1 cut(s) 527
Bsp143I GATC 5 cut(s) 501, 916, 1110, 1143, 1147
Bsp19I CCATGG 1 cut(s) 1213
BspACI CCGC 2 cut(s) 635, 711
BspANI GGCC 7 cut(s) 287, 670, 691, 699, 839, 951, 1095
BspCNI CTCAG 3 cut(s) 226, 632, 898
BspDI ATCGAT 2 cut(s) 1146, 1150
BspEI TCCGGA 1 cut(s) 527
BspLI GGNNCC 7 cut(s) 6, 131, 244, 633, 1035, 1095, 1196
BspMAI CTGCAG 2 cut(s) 802, 967
BspOI GCTAGC 1 cut(s) 734
BspPI GGATC 1 cut(s) 509
BspQI GCTCTTC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 540
BspT107I GGYRCC 2 cut(s) 242, 1194
BsrBI CCGCTC 1 cut(s) 637
BsrDI GCAATG 3 cut(s) 495, 645, 1234
BsrFI RCCGGY 1 cut(s) 1059
BsrI ACTGG 3 cut(s) 104, 176, 352
BssAI RCCGGY 1 cut(s) 1059
BssECI CCNNGG 5 cut(s) 42, 246, 517, 946, 1213
BssMI GATC 5 cut(s) 501, 916, 1110, 1143, 1147
BssT1I CCWWGG 3 cut(s) 246, 517, 1213
Bst2UI CCWGG 2 cut(s) 44, 948
Bst4CI ACNGT 2 cut(s) 208, 242
Bst6I CTCTTC 2 cut(s) 399, 1044
BstBI TTCGAA 1 cut(s) 540
BstC8I GCNNGC 4 cut(s) 289, 668, 732, 780
BstDEI CTNAG 6 cut(s) 213, 599, 619, 906, 1070, 1264
BstDSI CCRYGG 1 cut(s) 1213
BstENI CCTNNNNNAGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 111, 159
BstKTI GATC 5 cut(s) 504, 919, 1113, 1146, 1150
BstMAI GTCTC 1 cut(s) 1160
BstMBI GATC 5 cut(s) 501, 916, 1110, 1143, 1147
BstMCI CGRYCG 1 cut(s) 1150
BstMWI GCNNNNNNNGC 8 cut(s) 116, 218, 227, 330, 482, 881, 901, 1239
BstNI CCWGG 2 cut(s) 44, 948
BstSCI CCNGG 5 cut(s) 7, 42, 650, 686, 946
BstSFI CTRYAG 2 cut(s) 798, 963
BstSLI GKGCMC 3 cut(s) 608, 1097, 1197
BstXI CCANNNNNNTGG 1 cut(s) 99
Bsu15I ATCGAT 2 cut(s) 1146, 1150
Bsu36I CCTNAGG 2 cut(s) 599, 619
BsuRI GGCC 7 cut(s) 287, 670, 691, 699, 839, 951, 1095
BsuTUI ATCGAT 2 cut(s) 1146, 1150
BtgI CCRYGG 1 cut(s) 1213
BtsCI GGATG 2 cut(s) 111, 159
BtsI GCAGTG 2 cut(s) 298, 612
BtsIMutI CAGTG 5 cut(s) 119, 183, 298, 345, 612
Cac8I GCNNGC 4 cut(s) 289, 668, 732, 780
Cfr10I RCCGGY 1 cut(s) 1059
Cfr13I GGNCC 5 cut(s) 689, 1033, 1057, 1093, 1094
ClaI ATCGAT 2 cut(s) 1146, 1150
Csp6I GTAC 2 cut(s) 74, 643
CspAI ACCGGT 1 cut(s) 1059
CspCI CAANNNNNGTGG 4 cut(s) 334, 367, 369, 402
CviAII CATG 7 cut(s) 65, 86, 236, 313, 1025, 1176, 1214
CviQI GTAC 2 cut(s) 74, 643
DdeI CTNAG 6 cut(s) 213, 599, 619, 906, 1070, 1264
DpnI GATC 5 cut(s) 503, 918, 1112, 1145, 1149
DpnII GATC 5 cut(s) 501, 916, 1110, 1143, 1147
EaeI YGGCCR 2 cut(s) 697, 949
Eam1104I CTCTTC 2 cut(s) 399, 1044
EarI CTCTTC 2 cut(s) 399, 1044
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 3 cut(s) 246, 517, 1213
Eco24I GRGCYC 2 cut(s) 394, 1097
Eco47I GGWCC 2 cut(s) 1033, 1057
Eco53kI GAGCTC 1 cut(s) 392
Eco57I CTGAAG 3 cut(s) 135, 380, 1025
Eco81I CCTNAGG 2 cut(s) 599, 619
EcoICRI GAGCTC 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 42, 946
EcoT14I CCWWGG 3 cut(s) 246, 517, 1213
EcoT38I GRGCYC 2 cut(s) 394, 1097
ErhI CCWWGG 3 cut(s) 246, 517, 1213
FaeI CATG 7 cut(s) 68, 89, 239, 316, 1028, 1179, 1217
FaqI GGGAC 1 cut(s) 638
FatI CATG 7 cut(s) 64, 85, 235, 312, 1024, 1175, 1213
FbaI TGATCA 1 cut(s) 1110
FokI GGATG 2 cut(s) 118, 166
FriOI GRGCYC 2 cut(s) 394, 1097
FspBI CTAG 1 cut(s) 731
GsaI CCCAGC 2 cut(s) 279, 1094
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 7 cut(s) 287, 670, 691, 699, 839, 951, 1095
HapII CCGG 5 cut(s) 8, 528, 651, 687, 1060
Hin1II CATG 7 cut(s) 68, 89, 239, 316, 1028, 1179, 1217
HincII GTYRAC 2 cut(s) 28, 160
HindII GTYRAC 2 cut(s) 28, 160
HindIII AAGCTT 2 cut(s) 185, 1251
HinfI GANTC 6 cut(s) 47, 414, 429, 449, 537, 925
HpaII CCGG 5 cut(s) 8, 528, 651, 687, 1060
HphI GGTGA 5 cut(s) 193, 508, 550, 574, 1120
Hpy166II GTNNAC 4 cut(s) 28, 160, 684, 912
Hpy188I TCNGA 7 cut(s) 262, 399, 718, 862, 1044, 1115, 1274
Hpy188III TCNNGA 4 cut(s) 137, 418, 528, 1159
Hpy8I GTNNAC 4 cut(s) 28, 160, 684, 912
HpyAV CCTTC 4 cut(s) 64, 602, 733, 767
HpyCH4III ACNGT 2 cut(s) 208, 242
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 8 cut(s) 359, 763, 782, 800, 895, 965, 1024, 1242
HpyF10VI GCNNNNNNNGC 8 cut(s) 116, 218, 227, 330, 482, 881, 901, 1239
HpyF3I CTNAG 6 cut(s) 213, 599, 619, 906, 1070, 1264
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 7 cut(s) 68, 89, 239, 316, 1028, 1179, 1217
Kpn2I TCCGGA 1 cut(s) 527
Ksp22I TGATCA 1 cut(s) 1110
Kzo9I GATC 5 cut(s) 501, 916, 1110, 1143, 1147
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 5 cut(s) 44, 129, 253, 389, 403
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 340, 580
MalI GATC 5 cut(s) 503, 918, 1112, 1145, 1149
MbiI CCGCTC 1 cut(s) 637
MboI GATC 5 cut(s) 501, 916, 1110, 1143, 1147
MboII GAAGA 3 cut(s) 386, 1031, 1138
MfeI CAATTG 1 cut(s) 1243
MhlI GDGCHC 4 cut(s) 394, 608, 1097, 1197
MlsI TGGCCA 2 cut(s) 699, 951
MluCI AATT 7 cut(s) 408, 531, 673, 738, 876, 954, 1243
MluNI TGGCCA 2 cut(s) 699, 951
MlyI GAGTC 2 cut(s) 56, 919
MmeI TCCRAC 1 cut(s) 240
Mox20I TGGCCA 2 cut(s) 699, 951
MroI TCCGGA 1 cut(s) 527
MscI TGGCCA 2 cut(s) 699, 951
MseI TTAA 2 cut(s) 789, 935
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 2 cut(s) 699, 951
MspA1I CMGCKG 2 cut(s) 113, 1013
MspI CCGG 5 cut(s) 8, 528, 651, 687, 1060
MspR9I CCNGG 5 cut(s) 9, 44, 652, 688, 948
MunI CAATTG 1 cut(s) 1243
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 2 cut(s) 44, 948
MwoI GCNNNNNNNGC 8 cut(s) 116, 218, 227, 330, 482, 881, 901, 1239
NciI CCSGG 3 cut(s) 9, 652, 688
NcoI CCATGG 1 cut(s) 1213
NdeII GATC 5 cut(s) 501, 916, 1110, 1143, 1147
NheI GCTAGC 1 cut(s) 730
NlaIII CATG 7 cut(s) 68, 89, 239, 316, 1028, 1179, 1217
NlaIV GGNNCC 7 cut(s) 6, 131, 244, 633, 1035, 1095, 1196
NmuCI GTSAC 2 cut(s) 340, 580
NspV TTCGAA 1 cut(s) 540
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 4 cut(s) 414, 429, 449, 537
PflMI CCANNNNNTGG 1 cut(s) 1090
PinAI ACCGGT 1 cut(s) 1059
Ple19I CGATCG 1 cut(s) 1150
PleI GAGTC 2 cut(s) 55, 919
PpsI GAGTC 2 cut(s) 55, 919
Psp124BI GAGCTC 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 42, 946
PspFI CCCAGC 2 cut(s) 275, 1090
PspGI CCWGG 2 cut(s) 42, 946
PspN4I GGNNCC 7 cut(s) 6, 131, 244, 633, 1035, 1095, 1196
PspOMI GGGCCC 1 cut(s) 1093
PspPI GGNCC 5 cut(s) 689, 1033, 1057, 1093, 1094
PstI CTGCAG 2 cut(s) 802, 967
PvuI CGATCG 1 cut(s) 1150
PvuII CAGCTG 2 cut(s) 113, 1013
RsaI GTAC 2 cut(s) 75, 644
RsaNI GTAC 2 cut(s) 74, 643
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 394
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 789, 935
Sau3AI GATC 5 cut(s) 501, 916, 1110, 1143, 1147
Sau96I GGNCC 5 cut(s) 689, 1033, 1057, 1093, 1094
SchI GAGTC 2 cut(s) 56, 919
ScrFI CCNGG 5 cut(s) 9, 44, 652, 688, 948
SduI GDGCHC 4 cut(s) 394, 608, 1097, 1197
SfcI CTRYAG 2 cut(s) 798, 963
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 2 cut(s) 1033, 1057
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 1157
SmoI CTYRAG 1 cut(s) 1157
Sse9I AATT 7 cut(s) 408, 531, 673, 738, 876, 954, 1243
SsiI CCGC 2 cut(s) 635, 711
SspMI CTAG 1 cut(s) 731
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 5 cut(s) 7, 42, 650, 686, 946
StyI CCWWGG 3 cut(s) 246, 517, 1213
TaaI ACNGT 2 cut(s) 208, 242
TaiI ACGT 1 cut(s) 27
TaqI TCGA 3 cut(s) 540, 1146, 1150
TasI AATT 7 cut(s) 408, 531, 673, 738, 876, 954, 1243
TfiI GAWTC 4 cut(s) 414, 429, 449, 537
Tru1I TTAA 2 cut(s) 789, 935
Tru9I TTAA 2 cut(s) 789, 935
TscAI CASTG 5 cut(s) 126, 183, 298, 352, 619
TseFI GTSAC 2 cut(s) 340, 580
Tsp45I GTSAC 2 cut(s) 340, 580
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 5 cut(s) 126, 183, 298, 352, 619
Van91I CCANNNNNTGG 1 cut(s) 1090
VpaK11BI GGWCC 2 cut(s) 1033, 1057
XagI CCTNNNNNAGG 1 cut(s) 367
XapI RAATTY 1 cut(s) 673
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.