Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007050

Physical Location & Seq

Genomic Coordinates Reverse (-)

41930503 .. 41932309

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATGATGGCACTGCCCACAGGGATAGACCCCTTTACGAGGTTCTGAAAGAAAACAAGGAGAGGAAGGATGCAGAGTTCAACGAACGTTTCAAGCACAGACCAGCTAAAGCTTTGGACGATGAGGAGACTAACTTTCTTGATAGAATGCAGAGGACAAGAAAGGAATACGAACGGCGACTAGAGGATGAGGAAGCACAACAGCTTCTGAGTTTCAAGGCAGCCCTGGCAGCCAAGGCCAGCGTCGTGCATGAGCTTAAGGAAGCACCTAGTTGTCTTCCTCTAGGAGTCCAGGGACAGTTATCTGCAGCTGAAAAGAAGAATCCTACTCCTGGTTTACTGGGTATGATTATCAAAGTGAAGGAGCCACAAGCAAAGAAACCTAAAATTGAAGACGCTAACAACACAGTGAAAACTCCTCATGTTGATAGTAAAGATCATAGTTTGACAGAAGTGGTTAACTTCAAGGACGGTGATAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016598 GO:0016829 GO:0016840 GO:0016841 GO:0019438 GO:0019538 GO:0019748 GO:0019941 GO:0030163 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044550 GO:0045548 GO:0046677 GO:0046898 GO:0050896 GO:0051603 GO:0060992 GO:0071704 GO:0097305 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko01100 ko01110 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

Lyase_aromatic

Protein Analysis

161

Amino Acids

18.34

Weight (kDa)

7.03

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAM192A_Fyv6_N	PF10187	7 - 73	6.4e-15	FAM192A/Fyv6, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10340 AT5G04230 AT5G04230
fragaria_vesca	FvH4_7g19130
malus_domestica	MD01G1106900.v1.1 MD07G1172700.v1.1
prunus_persica	Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1
pyrus_communis	pycom01g13360 pycom07g16720
rosa_chinensis	RchiOBHm_Chr1g0363011
rosa_laevigata	RLG00000027602
rosa_multiflora	Rmu_co8466277.1_g000001 Rmu_sc0000174.1_g000003 Rmu_ssc0000356.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293550
rosa_rugosa	Rorug01G0303500 Rorug04G0330100 Rorug04G0330200
rosa_samantha	Rh1AG312500 Rh1BG275900 Rh1CG292700 Rh1DG306500
rosa_wichuraiana	Rw1G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	40, 332
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	5 cut(s)	82, 94, 217, 392, 466
AjnI	CCWGG	3 cut(s)	225, 291, 331
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	107, 113, 205, 256, 311
AluI	AGCT	5 cut(s)	107, 113, 205, 256, 311
Alw26I	GTCTC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	221, 230, 308
AsuHPI	GGTGA	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	269, 399
BbvI	GCAGC	3 cut(s)	233, 242, 320
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	3 cut(s)	227, 293, 333
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	3 cut(s)	182, 270, 284
BfmI	CTRYAG	1 cut(s)	306
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	3 cut(s)	222, 231, 309
BlsI	GCNGC	3 cut(s)	223, 232, 310
Bme1390I	CCNGG	3 cut(s)	227, 293, 333
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	3 cut(s)	227, 293, 333
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	2 cut(s)	269, 399
BsaJI	CCNNGG	3 cut(s)	225, 234, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 332
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	3 cut(s)	227, 293, 333
BseDI	CCNNGG	3 cut(s)	225, 234, 292
BseGI	GGATG	2 cut(s)	76, 193
BseLI	CCNNNNNNNGG	2 cut(s)	40, 332
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	140, 408
BseXI	GCAGC	3 cut(s)	233, 242, 320
BshFI	GGCC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	40, 332
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	310
BspTI	CTTAAG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	225, 234, 292
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	227, 293, 333
Bst4CI	ACNGT	3 cut(s)	300, 409, 473
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	209
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	76, 193
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 230, 236
BstNI	CCWGG	3 cut(s)	227, 293, 333
BstSCI	CCNGG	3 cut(s)	225, 291, 331
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	233, 242, 320
BstV2I	GAAGAC	2 cut(s)	269, 399
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	76, 193
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 414
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	208
CseI	GACGC	2 cut(s)	232, 404
CviAII	CATG	3 cut(s)	5, 251, 422
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	225, 291, 331
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	3 cut(s)	8, 254, 425
FaiI	YATR	6 cut(s)	6, 252, 347, 423, 441, 484
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	4, 250, 421
Fnu4HI	GCNGC	3 cut(s)	222, 231, 309
FokI	GGATG	2 cut(s)	83, 200
Fsp4HI	GCNGC	3 cut(s)	222, 231, 309
FspBI	CTAG	3 cut(s)	182, 270, 284
GluI	GCNGC	3 cut(s)	222, 231, 309
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	2 cut(s)	232, 404
Hin1II	CATG	3 cut(s)	8, 254, 425
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	2 cut(s)	288, 322
HpaI	GTTAAC	1 cut(s)	460
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	338, 460
Hpy188I	TCNGA	2 cut(s)	48, 210
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	338, 460
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	61, 355
HpyCH4III	ACNGT	3 cut(s)	300, 409, 473
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	4, 74, 151, 250, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 230, 236
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	8, 254, 425
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	233, 242, 320
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	3 cut(s)	182, 270, 284
MaeII	ACGT	1 cut(s)	88
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	3 cut(s)	269, 331, 404
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	34, 57, 118, 147, 178, 184, 291, 429
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	258, 459
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	257
MspR9I	CCNGG	3 cut(s)	227, 293, 333
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	3 cut(s)	227, 293, 333
MwoI	GCNNNNNNNGC	3 cut(s)	227, 230, 236
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	8, 254, 425
NlaIV	GGNNCC	1 cut(s)	366
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	223, 232, 310
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	225, 291, 331
PspGI	CCWGG	3 cut(s)	225, 291, 331
PspN4I	GGNNCC	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	258, 459
SatI	GCNGC	3 cut(s)	222, 231, 309
Sau3AI	GATC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	3 cut(s)	227, 293, 333
SetI	ASST	9 cut(s)	45, 91, 109, 115, 207, 258, 271, 313, 385
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	387
SspMI	CTAG	3 cut(s)	182, 270, 284
StyD4I	CCNGG	3 cut(s)	225, 291, 331
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	300, 409, 473
TaiI	ACGT	1 cut(s)	91
TasI	AATT	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	258, 459
Tru9I	TTAA	2 cut(s)	258, 459
TscAI	CASTG	2 cut(s)	19, 414
TseI	GCWGC	3 cut(s)	221, 230, 308
TspRI	CASTG	2 cut(s)	19, 414
Vha464I	CTTAAG	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	38
XspI	CTAG	3 cut(s)	182, 270, 284
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.