Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0018130

Physical Location & Seq

Genomic Coordinates Forward (+)

17866289 .. 17869315

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAATGCATTAGTGGCAACGAACAGACACTTTAAGTTTGCTGCTCGGCTTTTGGGATTGGACTCCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTCATTTTTCTTTCAATCCCGAAGTTCGTATTTCAGGAACTTGGATGGTTGGACACAGCAATTCGCCCTTTGGCTTTTGAGGTCATGAGAAAAGTTAGGGTAAGCATGTACGAGTATCAGCTGGAAAGCATGTTTGTTCACCACATGAGGCGGATAATTGTTCAGCTGTATATGGATTTGCTTTTGTTGGACTGTGCTGCTTTAAAGTTCTGGATTGGTGCTATCAGTGAAGATGCCCCCCTGTGCTGCGTTGGGGACTTTCTTGATTCAAAAACCAGCTGTGATATGTTGCAAGAAAGACTCAGAAAAGAAAATACCTCTACATACCGAAGATTATGTCCAACTTTAGCATGCTTGAAACCGCGGAATCACCGCCACCAACAGCTATGGCTGCGCAGTTCGTCGTCGTCCAGTATTCCTCCGAAATTCAACTCTCTCTTTACTCTCTCCGACTCAGTGCGTCTCTATTCTTCCAGGTACACCCATATCTATATCCCAAACGACTCTTTATATGCATCTATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

212

Amino Acids

24.59

Weight (kDa)

9.32

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018130)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g19060 pycom03g01220 pycom05g31460 pycom06g06780 pycom13g09500 pycom13g19130 pycom13g19180 pycom13g19250 pycom14g11370 pycom14g11820 pycom16g25300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	503
AccII	CGCG	1 cut(s)	472
AciI	CCGC	4 cut(s)	259, 470, 472, 481
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	2 cut(s)	218, 587
AgsI	TTSAA	4 cut(s)	123, 378, 466, 538
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	5 cut(s)	70, 229, 274, 387, 493
AluI	AGCT	5 cut(s)	70, 229, 274, 387, 493
Alw26I	GTCTC	1 cut(s)	575
ApeKI	GCWGC	4 cut(s)	41, 305, 354, 499
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspLEI	GCGC	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	239, 470
BbvI	GCAGC	4 cut(s)	28, 292, 341, 486
BccI	CCATC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	575
BisI	GCNGC	4 cut(s)	42, 306, 355, 500
BlsI	GCNGC	4 cut(s)	43, 307, 356, 501
Bme1390I	CCNGG	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	2 cut(s)	331, 632
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	424, 576
BseNI	ACTGG	1 cut(s)	519
BseXI	GCAGC	4 cut(s)	28, 292, 341, 486
Bsh1236I	CGCG	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	575
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	10
BspACI	CCGC	4 cut(s)	259, 470, 472, 481
BspCNI	CTCAG	2 cut(s)	423, 575
BspFNI	CGCG	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	410, 562
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	504
BstMAI	GTCTC	1 cut(s)	575
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 499
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	3 cut(s)	217, 241, 462
BstSCI	CCNGG	1 cut(s)	581
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	28, 292, 341, 486
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	340, 570
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	504
Cfr42I	CCGCGG	1 cut(s)	473
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	217, 586
CviAII	CATG	5 cut(s)	193, 214, 238, 253, 459
CviJI	RGCY	8 cut(s)	49, 70, 182, 229, 274, 387, 493, 499
CviKI_1	RGCY	8 cut(s)	49, 70, 182, 229, 274, 387, 493, 499
CviQI	GTAC	2 cut(s)	217, 586
DdeI	CTNAG	2 cut(s)	410, 562
DraI	TTTAAA	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	581
EcoT22I	ATGCAT	2 cut(s)	10, 625
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	5 cut(s)	196, 217, 241, 256, 462
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	5 cut(s)	192, 213, 237, 252, 458
Fnu4HI	GCNGC	4 cut(s)	42, 306, 355, 500
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	4 cut(s)	42, 306, 355, 500
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	4 cut(s)	42, 306, 355, 500
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	5 cut(s)	196, 217, 241, 256, 462
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	6 cut(s)	62, 374, 408, 475, 560, 611
HphI	GGTGA	2 cut(s)	239, 470
Hpy166II	GTNNAC	3 cut(s)	83, 247, 588
Hpy188I	TCNGA	3 cut(s)	413, 531, 559
Hpy188III	TCNNGA	5 cut(s)	127, 143, 193, 319, 371
Hpy8I	GTNNAC	3 cut(s)	83, 247, 588
Hpy99I	CGWCG	2 cut(s)	514, 517
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	8, 400, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 499
HpyF3I	CTNAG	2 cut(s)	410, 562
Hsp92II	CATG	5 cut(s)	196, 217, 241, 256, 462
HspAI	GCGC	1 cut(s)	502
KspI	CCGCGG	1 cut(s)	473
LpnPI	CCDG	8 cut(s)	128, 215, 304, 362, 397, 532, 568, 595
Lsp1109I	GCAGC	4 cut(s)	28, 292, 341, 486
LweI	GCATC	2 cut(s)	331, 632
MboII	GAAGA	3 cut(s)	350, 450, 570
MluCI	AATT	3 cut(s)	168, 264, 533
MlyI	GAGTC	4 cut(s)	56, 402, 554, 605
MmeI	TCCRAC	4 cut(s)	138, 276, 473, 582
MnlI	CCTC	4 cut(s)	181, 249, 436, 537
Mph1103I	ATGCAT	2 cut(s)	10, 625
MseI	TTAA	2 cut(s)	33, 311
MspA1I	CMGCKG	4 cut(s)	229, 274, 387, 472
MspR9I	CCNGG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	583
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	14, 499
NlaIII	CATG	5 cut(s)	196, 217, 241, 256, 462
NmeAIII	GCCGAG	1 cut(s)	25
NsbI	TGCGCA	1 cut(s)	503
NsiI	ATGCAT	2 cut(s)	10, 625
NspI	RCATGY	3 cut(s)	217, 241, 462
PaeI	GCATGC	1 cut(s)	462
PagI	TCATGA	1 cut(s)	192
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	374, 475
PkrI	GCNGC	4 cut(s)	43, 307, 356, 501
PleI	GAGTC	4 cut(s)	56, 402, 554, 605
PpsI	GAGTC	4 cut(s)	56, 402, 554, 605
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PvuII	CAGCTG	3 cut(s)	229, 274, 387
RsaI	GTAC	2 cut(s)	218, 587
RsaNI	GTAC	2 cut(s)	217, 586
SacII	CCGCGG	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	33, 311
SatI	GCNGC	4 cut(s)	42, 306, 355, 500
SchI	GAGTC	4 cut(s)	56, 402, 554, 605
ScrFI	CCNGG	1 cut(s)	583
SetI	ASST	9 cut(s)	72, 111, 192, 231, 276, 389, 428, 495, 587
SfaNI	GCATC	2 cut(s)	331, 632
Sfr303I	CCGCGG	1 cut(s)	473
SgrBI	CCGCGG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	3 cut(s)	168, 264, 533
SsiI	CCGC	4 cut(s)	259, 470, 472, 481
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	302
TasI	AATT	3 cut(s)	168, 264, 533
TfiI	GAWTC	2 cut(s)	374, 475
Tru1I	TTAA	2 cut(s)	33, 311
Tru9I	TTAA	2 cut(s)	33, 311
TscAI	CASTG	2 cut(s)	340, 570
TseI	GCWGC	4 cut(s)	41, 305, 354, 499
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	340, 570
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	3 cut(s)	217, 241, 462
Zsp2I	ATGCAT	2 cut(s)	10, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.