Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018130

Physical Location & Seq

Genomic Coordinates Forward (+)

15252302 .. 15253740

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTGGCCAGTAACATGTCCAGGGCAAGCTTTGAATGCACCTGATGACTTGCCTAAGAATGTCACACGTACTTTGAATCAGGGCTCAATTCCCATGAGCATGGATATTCATCATTCACAGCAGACTCTGCTTCTTGGGGGGGACATAGGGCTGTGGGAAGTTGGATCTAGGAAGATCCTCTGCATGAATACGGAATCACCGCCACCAACAGCTATGGCTGCACAGTTCGTCGTCGTCCAGTATTCCTCCAAAATTCCACTATCTCTCTTTGCTCTCTCCTACTCAGTTGCTGAGAAGAACAAAGATGTGCAATTAATAGATTTTGTTGAAATCGAGTTTTTGGCTGAGCAGGTGGAAGCCTATCAGGAAAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

126

Amino Acids

13.82

Weight (kDa)

4.55

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018130)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g19060 pycom03g01220 pycom05g31460 pycom06g06780 pycom13g09500 pycom13g19130 pycom13g19180 pycom13g19250 pycom14g11370 pycom14g11820 pycom16g25300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	340
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	169, 172
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	1 cut(s)	70
AflIII	ACRYGT	2 cut(s)	14, 65
AgsI	TTSAA	3 cut(s)	34, 76, 329
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	2 cut(s)	29, 212
AluI	AGCT	2 cut(s)	29, 212
AlwI	GGATC	2 cut(s)	169, 172
AlwNI	CAGNNNCTG	2 cut(s)	127, 290
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	252
AseI	ATTAAT	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	8, 238
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	282, 297, 336
BseNI	ACTGG	2 cut(s)	8, 238
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	164, 174
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	3 cut(s)	283, 296, 337
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	169, 172
BsrI	ACTGG	2 cut(s)	8, 238
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	164, 174
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	54, 283, 291, 345
BstKTI	GATC	2 cut(s)	167, 177
BstMBI	GATC	2 cut(s)	164, 174
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 127, 218
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	164, 174
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	164, 174
BsuRI	GGCC	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	2 cut(s)	127, 290
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	4 cut(s)	15, 94, 100, 184
CviJI	RGCY	8 cut(s)	7, 29, 84, 151, 212, 218, 344, 359
CviKI_1	RGCY	8 cut(s)	7, 29, 84, 151, 212, 218, 344, 359
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	4 cut(s)	54, 283, 291, 345
DpnI	GATC	2 cut(s)	166, 176
DpnII	GATC	2 cut(s)	164, 174
EaeI	YGGCCR	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	4 cut(s)	18, 97, 103, 187
FaiI	YATR	6 cut(s)	16, 95, 101, 146, 185, 215
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	14, 93, 99, 183
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	18, 97, 103, 187
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	3 cut(s)	76, 124, 194
HphI	GGTGA	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	1 cut(s)	365
Hpy99I	CGWCG	2 cut(s)	233, 236
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	38, 183, 221, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 127, 218
HpyF3I	CTNAG	4 cut(s)	54, 283, 291, 345
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	18, 97, 103, 187
Kzo9I	GATC	2 cut(s)	164, 174
LpnPI	CCDG	8 cut(s)	6, 21, 33, 54, 65, 251, 335, 350
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	10, 61
MalI	GATC	2 cut(s)	166, 176
MboI	GATC	2 cut(s)	164, 174
MboII	GAAGA	2 cut(s)	184, 307
MflI	RGATCY	2 cut(s)	164, 174
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	3 cut(s)	87, 252, 311
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	2 cut(s)	188, 256
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	35, 127, 218
NdeII	GATC	2 cut(s)	164, 174
NlaIII	CATG	4 cut(s)	18, 97, 103, 187
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	340
PciI	ACATGT	1 cut(s)	14
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	76, 194
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	68
PscI	ACATGT	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PstNI	CAGNNNCTG	2 cut(s)	127, 290
PsuI	RGATCY	2 cut(s)	164, 174
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	164, 174
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	5 cut(s)	31, 43, 70, 214, 354
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	87, 252, 311
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	87, 252, 311
TfiI	GAWTC	2 cut(s)	76, 194
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	98, 200
TspGWI	ACGGA	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	314
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.