pycom14g11820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0018130
Physical Location & Seq
Reverse (-)
14909843 .. 14910801
959 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g11820.1

Sequence Viewer

Length: 297 bp
ATGCCCCCCCTGTGCTGCGTTGGGGACTTTCTTGATTCAAAAACCAGCTGTGATCTGTTGCAAGAAAGACTCAGAAAAGAAAATACCTCTACATACCGAAGATTATGTCCAACTTTAGCATGCTTGAAACCGCGGAATCACCGCCACCAACAGCTATGGCTGCGCAGTTCGTCGTCGTCCAGTATTCCTCCGAAATTCAACTCTCTCTTTACTCTCTCCGACTCAGTGCATCTCTATTCTTCCAGGTACACCCATATCTATATCCCAAACGACTCTTTATATGTATCTATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.34

Weight (kDa)

9.04

Isoelectric Point (pI)

74.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 164
AccII CGCG 1 cut(s) 133
AciI CCGC 3 cut(s) 131, 133, 142
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 3 cut(s) 39, 127, 199
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 48, 154
AluI AGCT 2 cut(s) 48, 154
ApeKI GCWGC 2 cut(s) 15, 160
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AspLEI GCGC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 131
BbvI GCAGC 2 cut(s) 2, 147
BciT130I CCWGG 1 cut(s) 244
BisI GCNGC 2 cut(s) 16, 161
BlsI GCNGC 2 cut(s) 17, 162
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 85, 237
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 2, 147
Bsh1236I CGCG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 3 cut(s) 131, 133, 142
BspCNI CTCAG 2 cut(s) 84, 236
BspFNI CGCG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 71, 223
BstDSI CCRYGG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 242
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 2, 147
BtgI CCRYGG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 165
Cfr42I CCGCGG 1 cut(s) 134
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 120
CviJI RGCY 3 cut(s) 48, 154, 160
CviKI_1 RGCY 3 cut(s) 48, 154, 160
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 71, 223
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 242
FaeI CATG 1 cut(s) 123
FaiI YATR 8 cut(s) 94, 106, 121, 157, 255, 261, 280, 282
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 16, 161
Fsp4HI GCNGC 2 cut(s) 16, 161
FspI TGCGCA 1 cut(s) 164
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 16, 161
HhaI GCGC 1 cut(s) 165
Hin1II CATG 1 cut(s) 123
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 5 cut(s) 35, 69, 136, 221, 272
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 74, 192, 220
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 2 cut(s) 175, 178
HpyCH4V TGCA 2 cut(s) 61, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 71, 223
Hsp92II CATG 1 cut(s) 123
HspAI GCGC 1 cut(s) 163
KspI CCGCGG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 23, 58, 193, 229, 256
Lsp1109I GCAGC 2 cut(s) 2, 147
LweI GCATC 1 cut(s) 238
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 2 cut(s) 111, 231
MluCI AATT 1 cut(s) 194
MlyI GAGTC 3 cut(s) 63, 215, 266
MmeI TCCRAC 2 cut(s) 134, 243
MnlI CCTC 2 cut(s) 97, 198
MspA1I CMGCKG 2 cut(s) 48, 133
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 123
NsbI TGCGCA 1 cut(s) 164
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 35, 136
PkrI GCNGC 2 cut(s) 17, 162
PleI GAGTC 3 cut(s) 63, 215, 266
PpsI GAGTC 3 cut(s) 63, 215, 266
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 48
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacII CCGCGG 1 cut(s) 134
SatI GCNGC 2 cut(s) 16, 161
Sau3AI GATC 1 cut(s) 52
SchI GAGTC 3 cut(s) 63, 215, 266
ScrFI CCNGG 1 cut(s) 244
SetI ASST 4 cut(s) 50, 89, 156, 248
SfaNI GCATC 1 cut(s) 238
Sfr303I CCGCGG 1 cut(s) 134
SgrBI CCGCGG 1 cut(s) 134
SphI GCATGC 1 cut(s) 123
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 131, 133, 142
StyD4I CCNGG 1 cut(s) 242
TasI AATT 1 cut(s) 194
TfiI GAWTC 2 cut(s) 35, 136
TscAI CASTG 1 cut(s) 231
TseI GCWGC 2 cut(s) 15, 160
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.