Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018130

Physical Location & Seq

Genomic Coordinates Forward (+)

15194895 .. 15196333

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTGGCCAGTAACATGTCCAGGGCAAGCTTTGAATGCACCTGATGACTTGCCTAAGAATGTCACACGGACTTTGAATCAGGGCCCAATTCCCATGAGCATGGATTTTCATCATTCACAGCAGACTCTGCTTCTTGGCGGAATCACCGCCACCAACAGCTATGGCTGCACAGTTCGTCGTCGTCCAGTATTCCTCCAAAATTCCACTATCTCTCTTTGCTCTCTCTTACTCAGTGTTGCTGAGAAGAACAAAGATGTGCAATTAATAGATTTTGTTGAAATCGAGTTTTTGGCTGAGCAGGTGGAAGCCTATCAGGAAAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

4.92

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018130)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g19060 pycom03g01220 pycom05g31460 pycom06g06780 pycom13g09500 pycom13g19130 pycom13g19180 pycom13g19250 pycom14g11370 pycom14g11820 pycom16g25300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	2 cut(s)	138, 147
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	34, 76, 278
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	2 cut(s)	29, 159
AluI	AGCT	2 cut(s)	29, 159
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	5, 82
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	82, 83
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	166
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	21
BmgT120I	GGNCC	2 cut(s)	82, 83
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	8, 185
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	231, 244, 285
BseNI	ACTGG	2 cut(s)	8, 185
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	7, 84
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	7, 84
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	2 cut(s)	138, 147
BspANI	GGCC	2 cut(s)	7, 84
BspCNI	CTCAG	3 cut(s)	232, 243, 286
BspLI	GGNNCC	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	8, 185
BssECI	CCNNGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	54, 230, 240, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 127, 165
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	7, 84
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	82, 83
CviAII	CATG	3 cut(s)	15, 94, 100
CviJI	RGCY	7 cut(s)	7, 29, 84, 159, 165, 293, 308
CviKI_1	RGCY	7 cut(s)	7, 29, 84, 159, 165, 293, 308
DdeI	CTNAG	4 cut(s)	54, 230, 240, 294
EaeI	YGGCCR	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	3 cut(s)	18, 97, 103
FaiI	YATR	4 cut(s)	16, 95, 101, 162
FatI	CATG	3 cut(s)	14, 93, 99
Fnu4HI	GCNGC	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	7, 84
Hin1II	CATG	3 cut(s)	18, 97, 103
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	3 cut(s)	76, 124, 141
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	1 cut(s)	314
Hpy99I	CGWCG	2 cut(s)	180, 183
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	38, 168, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 127, 165
HpyF3I	CTNAG	4 cut(s)	54, 230, 240, 294
Hsp92II	CATG	3 cut(s)	18, 97, 103
LpnPI	CCDG	8 cut(s)	6, 21, 33, 54, 65, 198, 284, 299
Lsp1109I	GCAGC	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	10, 61
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	3 cut(s)	87, 199, 260
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	1 cut(s)	203
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	35, 127, 165
NlaIII	CATG	3 cut(s)	18, 97, 103
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	289
PciI	ACATGT	1 cut(s)	14
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	76, 141
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	84
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	82, 83
PstNI	CAGNNNCTG	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	82, 83
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	4 cut(s)	31, 43, 161, 303
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	87, 199, 260
SsiI	CCGC	2 cut(s)	138, 147
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	87, 199, 260
TfiI	GAWTC	2 cut(s)	76, 141
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	238
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.