pycom16g25300

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
27128979 .. 27129738
760 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25300.2

Sequence Viewer

Length: 279 bp
ATGCGGAATCACCGCCACCAACAGCTATGGTTGCGCAGTTCGTCGTCGTCCAGTATTCCTCCAAAATTCCACTATCTCTCTTTGCTCTCTCCTACTCAGTGCGTCTCTATTCTTCCAGGTCCACCAATATCTATATCCCAAACGACTCTTTATATGTATCTATTTGTTAGAGAAAGCTTTTGCCTTTTGGTTTCAATTTTATCTGCTGTCTGCATTGGATTTGATGTCTTCTTGGTCCTTATTTTTTTATCCGGCAATCGAGCTTGCATTATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.36

Weight (kDa)

9.2

Isoelectric Point (pI)

71.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 35
AciI CCGC 2 cut(s) 4, 13
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 25, 177, 263
AluI AGCT 3 cut(s) 25, 177, 263
Alw26I GTCTC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 119, 235
AvaII GGWCC 2 cut(s) 119, 235
BbsI GAAGAC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 119, 235
BmgT120I GGNCC 2 cut(s) 119, 235
BmrFI CCNGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BspACI CCGC 2 cut(s) 4, 13
BspCNI CTCAG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 119, 235
CseI GACGC 1 cut(s) 91
CviJI RGCY 3 cut(s) 25, 177, 263
CviKI_1 RGCY 3 cut(s) 25, 177, 263
DdeI CTNAG 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 119, 235
EcoRII CCWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 109
FaiI YATR 4 cut(s) 28, 134, 153, 155
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 1 cut(s) 35
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 2 cut(s) 7, 145
HpaII CCGG 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 122
Hpy99I CGWCG 2 cut(s) 46, 49
HpyCH4V TGCA 2 cut(s) 213, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 96
HspAI GCGC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 64, 102, 129, 265
MboII GAAGA 2 cut(s) 104, 220
MluCI AATT 2 cut(s) 65, 195
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 1 cut(s) 69
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 35
PfeI GAWTC 1 cut(s) 7
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 2 cut(s) 119, 235
Sau96I GGNCC 2 cut(s) 119, 235
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 27, 121, 179, 265
SgeI CNNG 6 cut(s) 63, 128, 129, 244, 264, 272
SinI GGWCC 2 cut(s) 119, 235
Sse9I AATT 2 cut(s) 65, 195
SsiI CCGC 2 cut(s) 4, 13
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 1 cut(s) 259
TasI AATT 2 cut(s) 65, 195
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 1 cut(s) 104
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 119, 235
XapI RAATTY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.