Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018130

Physical Location & Seq

Genomic Coordinates Forward (+)

15173882 .. 15175320

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGGCCAGTAACATGTCCAGGGCAAGCTTTGAATGCACCTGATGACTTGCCTAAGAATGTCACACGGACTTTGAATCAGGGCCCAATTCCCATGAGCATGGATTTTCATCATTCACAGCAGACTCTGCTTCTTGGGTTGTATTTTTTAATTGGTACCAATATGGGGGACATAGGGCTGTGGGAAGTTGGATCTAGGAAGATCCTCTGCATGAAGACGGAATCACCGCCACCAACAGCTATGGCTGCACAGTTCGTCGTCGTCCAGTATTCCTCCAAAATTCCACTATCTCTCTTTGCTCTCTCTTACTCAGTGCGTCTCTATTCTTCCAGGTCCACCAATATCTATATCCCAAACGACTCTTTATATGTTGCTAAGAAGAACAAAGATGTGCAATTAATAGATTTTGTTGAAATCGAGTTTTTGGCTGAGCAGGTGGAAGCCTATCAGGAAAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

154

Amino Acids

17.17

Weight (kDa)

5.27

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018130)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g19060 pycom03g01220 pycom05g31460 pycom06g06780 pycom13g09500 pycom13g19130 pycom13g19180 pycom13g19250 pycom14g11370 pycom14g11820 pycom16g25300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	196, 199
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	34, 76, 413
AjnI	CCWGG	2 cut(s)	19, 329
AluBI	AGCT	2 cut(s)	29, 239
AluI	AGCT	2 cut(s)	29, 239
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	196, 199
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	5, 82
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	279
AseI	ATTAAT	1 cut(s)	398
Asp718I	GGTACC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	82, 83, 333
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	21, 331
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	246
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	21, 331
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	3 cut(s)	82, 83, 333
BmiI	GGNNCC	2 cut(s)	84, 157
BmrFI	CCNGG	2 cut(s)	21, 331
BpiI	GAAGAC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	8, 265
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	21, 331
BseDI	CCNNGG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	324, 420
BseNI	ACTGG	2 cut(s)	8, 265
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	7, 84
BshNI	GGYRCC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	7, 84
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	191, 201
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	7, 84
BspCNI	CTCAG	2 cut(s)	323, 421
BspLI	GGNNCC	2 cut(s)	84, 157
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	196, 199
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	8, 265
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	191, 201
Bst2UI	CCWGG	2 cut(s)	21, 331
Bst4CI	ACNGT	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	54, 310, 375, 429
BstKTI	GATC	2 cut(s)	194, 204
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	191, 201
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 127, 245
BstNI	CCWGG	2 cut(s)	21, 331
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	19, 329
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	191, 201
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	191, 201
BsuRI	GGCC	2 cut(s)	7, 84
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	82, 83, 333
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	4 cut(s)	15, 94, 100, 211
CviJI	RGCY	8 cut(s)	7, 29, 84, 178, 239, 245, 428, 443
CviKI_1	RGCY	8 cut(s)	7, 29, 84, 178, 239, 245, 428, 443
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	4 cut(s)	54, 310, 375, 429
DpnI	GATC	2 cut(s)	193, 203
DpnII	GATC	2 cut(s)	191, 201
EaeI	YGGCCR	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	19, 329
EcoT38I	GRGCYC	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	4 cut(s)	18, 97, 103, 214
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	14, 93, 99, 210
Fnu4HI	GCNGC	1 cut(s)	246
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	7, 84
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	18, 97, 103, 214
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	4 cut(s)	76, 124, 221, 359
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	38, 210, 248, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 127, 245
HpyF3I	CTNAG	4 cut(s)	54, 310, 375, 429
Hsp92II	CATG	4 cut(s)	18, 97, 103, 214
KpnI	GGTACC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	191, 201
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	10, 61
MalI	GATC	2 cut(s)	193, 203
MboI	GATC	2 cut(s)	191, 201
MboII	GAAGA	4 cut(s)	211, 226, 318, 391
MflI	RGATCY	2 cut(s)	191, 201
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	4 cut(s)	87, 150, 279, 395
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	118, 353
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	215, 283
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	2 cut(s)	149, 398
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	21, 331
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	21, 331
MwoI	GCNNNNNNNGC	3 cut(s)	35, 127, 245
NdeII	GATC	2 cut(s)	191, 201
NlaIII	CATG	4 cut(s)	18, 97, 103, 214
NlaIV	GGNNCC	2 cut(s)	84, 157
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	424
PciI	ACATGT	1 cut(s)	14
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	76, 221
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	118, 353
PpsI	GAGTC	2 cut(s)	118, 353
PscI	ACATGT	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	19, 329
PspGI	CCWGG	2 cut(s)	19, 329
PspN4I	GGNNCC	2 cut(s)	84, 157
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	82, 83, 333
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	191, 201
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	149, 398
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	191, 201
Sau96I	GGNCC	3 cut(s)	82, 83, 333
SchI	GAGTC	2 cut(s)	118, 353
ScrFI	CCNGG	2 cut(s)	21, 331
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	5 cut(s)	31, 43, 241, 335, 438
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	87, 150, 279, 395
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	19, 329
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	87, 150, 279, 395
TfiI	GAWTC	2 cut(s)	76, 221
Tru1I	TTAA	2 cut(s)	149, 398
Tru9I	TTAA	2 cut(s)	149, 398
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	98, 227
TspGWI	ACGGA	2 cut(s)	82, 233
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	333
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.