Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0018130

Physical Location & Seq

Genomic Coordinates Forward (+)

14443701 .. 14444774

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGGCCAGTAACATGTCCAGGGCAAGCTTTGAATGCACCTGATGACTTGCCTAAGAATGTCACACGGACATTGAATCAGGGCTCAATTCCCATGAGCATGGATTTTCATCCTTCACAGCAGACTCTGCTTCTTGGTTGGTACCAATATGGGGGACATAGGGCTGTGGGAAGTTGGATCTATGAAGATCATGGCATCGGAATCACTGCCACCAACAGCTATGGCTGCGCAGTTCGTCGTCGTCCAGTATTCCTCCAAAATTCCACTCTCTCTTTGCTCTCTCCTATTCAGTGCGTCTCTATTCTTTCGGGTCCACCAATATCTATATCCCAAACGACTCTTTATATGTATCCATTTGTTAGAGAAAGCTTTTGCCTTTTGGGTTCAATTTTATCTGCTGTCTGCATTGGATTTGATGTCTTCTTGGTACTTATTTTTTTTATCCAGCAATCGAGCTTGCATTATCACTTGAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

7.69

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018130)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g19060 pycom03g01220 pycom05g31460 pycom06g06780 pycom13g09500 pycom13g19130 pycom13g19180 pycom13g19250 pycom14g11370 pycom14g11820 pycom16g25300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	229
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	2 cut(s)	143, 429
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	34, 76, 387
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	4 cut(s)	29, 219, 369, 456
AluI	AGCT	4 cut(s)	29, 219, 369, 456
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	259
Asp718I	GGTACC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	21
BciVI	GTATCC	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	143, 312
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	8, 245
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	8, 245
BseXI	GCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	177, 187
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	143, 312
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	8, 245
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	177, 187
Bst2UI	CCWGG	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	27, 458
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	180, 190
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	177, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 127, 225
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 296
Cac8I	GCNNGC	2 cut(s)	27, 458
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	142, 428
CviAII	CATG	4 cut(s)	15, 94, 100, 191
CviJI	RGCY	8 cut(s)	7, 29, 84, 164, 219, 225, 369, 456
CviKI_1	RGCY	8 cut(s)	7, 29, 84, 164, 219, 225, 369, 456
CviQI	GTAC	2 cut(s)	142, 428
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	179, 189
DpnII	GATC	2 cut(s)	177, 187
EaeI	YGGCCR	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	18, 97, 103, 194
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	4 cut(s)	14, 93, 99, 190
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	226
FspI	TGCGCA	1 cut(s)	229
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	7
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	18, 97, 103, 194
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	2 cut(s)	27, 367
HinfI	GANTC	4 cut(s)	76, 124, 201, 337
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	2 cut(s)	240, 243
HpyAV	CCTTC	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	38, 405, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 127, 225
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	18, 97, 103, 194
HspAI	GCGC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	177, 187
LpnPI	CCDG	7 cut(s)	6, 21, 33, 54, 65, 258, 458
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	10, 61
MalI	GATC	2 cut(s)	179, 189
MboI	GATC	2 cut(s)	177, 187
MboII	GAAGA	2 cut(s)	197, 412
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	4 cut(s)	87, 259, 387, 475
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	118, 331
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	1 cut(s)	263
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	35, 127, 225
NdeII	GATC	2 cut(s)	177, 187
NlaIII	CATG	4 cut(s)	18, 97, 103, 194
NlaIV	GGNNCC	2 cut(s)	143, 312
NmuCI	GTSAC	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	229
NspI	RCATGY	1 cut(s)	18
PciI	ACATGT	1 cut(s)	14
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	76, 201
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	2 cut(s)	118, 331
PpsI	GAGTC	2 cut(s)	118, 331
PscI	ACATGT	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	143, 312
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	143, 429
RsaNI	GTAC	2 cut(s)	142, 428
RseI	CAYNNNNRTG	1 cut(s)	98
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	177, 187
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	118, 331
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	5 cut(s)	31, 43, 221, 371, 458
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	4 cut(s)	87, 259, 387, 475
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	1 cut(s)	452
TasI	AATT	4 cut(s)	87, 259, 387, 475
TfiI	GAWTC	2 cut(s)	76, 201
TscAI	CASTG	2 cut(s)	211, 296
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	98, 198
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	211, 296
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.