pycom03g01220

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
961196 .. 961950
755 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01220.1

Sequence Viewer

Length: 276 bp
ATGCGGAATCACCGCCACCAACAGCTATGGCTACACAGTTCATCGTCATCCGGTATTCCTCCAAAATTCCACTATCTCTCTTTGTTCTCTCCTACTCAGTGCGTCTCTATTCTTCCAGGTCCACCAATATCTATATCCCAAATGACTCTTTATATGTATCTATTTGTTAGAGAAGGCTTTTGCCTTTTGGGTTCAATTTTATCTGCTGTCTGCATTGGATTTGATGTCTTCTTGGTCCCTATTTTTTTTTATCCAGCAATCGAGCTTGCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

7.79

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 13
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 25, 265
AluI AGCT 2 cut(s) 25, 265
Alw26I GTCTC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 119, 235
AvaII GGWCC 2 cut(s) 119, 235
BbsI GAAGAC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 119, 235
BmgT120I GGNCC 2 cut(s) 119, 235
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 50
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 221
BspACI CCGC 2 cut(s) 4, 13
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 119, 235
CseI GACGC 1 cut(s) 91
CviJI RGCY 4 cut(s) 25, 31, 177, 265
CviKI_1 RGCY 4 cut(s) 25, 31, 177, 265
DdeI CTNAG 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 119, 235
EcoRII CCWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 109
FaiI YATR 5 cut(s) 28, 134, 153, 155, 274
FaqI GGGAC 1 cut(s) 221
FokI GGATG 1 cut(s) 34
HapII CCGG 1 cut(s) 51
HgaI GACGC 1 cut(s) 91
HinfI GANTC 2 cut(s) 7, 145
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 213, 269
HpyF3I CTNAG 1 cut(s) 96
LpnPI CCDG 4 cut(s) 64, 102, 129, 267
MboII GAAGA 2 cut(s) 104, 220
MluCI AATT 2 cut(s) 65, 195
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 1 cut(s) 69
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 7
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 119, 235
Sau96I GGNCC 2 cut(s) 119, 235
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 117
SetI ASST 3 cut(s) 27, 121, 267
SgeI CNNG 5 cut(s) 63, 128, 129, 244, 266
SinI GGWCC 2 cut(s) 119, 235
Sse9I AATT 2 cut(s) 65, 195
SsiI CCGC 2 cut(s) 4, 13
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 65, 195
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 119, 235
XapI RAATTY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.