pycom01g20500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013720
Physical Location & Seq
Forward (+)
18901841 .. 18902899
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20500.1

Sequence Viewer

Length: 1059 bp
ATGATAGATGTGTATGGAAGGCGTGATTTGGCGAATTTGGCTTCGGAAGTATTTGATCGGATGGGTGAAAGAAACATAGTTTCTTGGAATGCCATGATCACAGGATATGCGAAAGTGGGAAACTTGGTTGACGCAAGAAAGCTTTTCAATGAGATGCCGAAGAGGAATGTGGTGTCTTGGACTTCCATGATCACTTGTTACTCTCAAGCTAACCAACATTCTGAGGCGGTGAGTCTTTTTCAAGAAATGATGGCAGCTAATGTGAGACCGGATGAAATAGCCGTGGCTAGTGTGCTTTCTGCTTGTGCCCATGTCGGTTCACTTGATGTGGGAGAGGCTGTCCACCACTACATAAAAACGCATGGTGTGAAAGTAGATGTTTATGTCGGAAACGCTTTGATAGATATGTATTGCAAATGTGGGGTGGTTGAGAAGGCAATGGAGGTGTTCCAATGGATGGAAAAGAAAGACTCTGTCTCATGGACTTCGGTAATTTCAGGCCTTGCTGTCAACGGTTTTGCAGATTCTGCACTCGATTGTTTCTCGCGGATGTTGAGAGAAGGTGTTCAACCAACTCATGGAACGTTTGTAGGGATTTTGTTAGCTTGTACTCATGTGGGATTGGTAGAGAAAGGATTGGAATATTTTGAAAGCGTGGAAAAGATTCATGGACTGATGCCAGAATTGAAACACCATGGATGTGTTGTGGATCTTTTGAGTCGCTCTGGCAAACTAGACAAAGCATATGAGTTTGTACAAACTATGCCGATGATACCAGGTGTTGTAGTATGGAGGATATTGCTGAGTGCATCCAAGATTCACGGGAATGTGGCCCTAGCTGAGATTGTCACAGCCAAGCTTGTAGAACTGGATCCTTCCAACAGCGGGAATTACATTCTCTCATCGAGTACTTACATAGGTTCAGATAGATGGGACGATGCTATGAAAATGAGAGAATTGATGGGTGAGAGAAAAGTGCAGAAGCCATTTGGTCGTGGTTCCATCAATATAGATGGCATATTTTCGAACAACCCTCAAGAGTCGGGACTGATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

353

Amino Acids

38.83

Weight (kDa)

6.01

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 23 - 52 1.4e-06 PPR repeat
PPR_2 PF13041 24 - 57 1e-09 PPR repeat family
PPR PF01535 27 - 57 4.5e-09 PPR repeat
PPR_2 PF13041 55 - 104 1.4e-10 PPR repeat family
PPR PF01535 58 - 86 9.4e-08 PPR repeat
TPR_24 PF23276 94 - 158 5.5e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 122 - 154 3.9e-06 PPR repeat
PPR_2 PF13041 126 - 156 1.2e-06 PPR repeat family
PPR_2 PF13041 156 - 203 7.9e-07 PPR repeat family
PPR PF01535 159 - 189 7.2e-07 PPR repeat
E_motif PF20431 274 - 329 4.9e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 457, 578
AccII CGCG 1 cut(s) 547
AciI CCGC 3 cut(s) 227, 547, 885
AclI AACGTT 1 cut(s) 584
AclWI GGATC 3 cut(s) 717, 866, 879
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 3 cut(s) 610, 756, 910
AfiI CCNNNNNNNGG 3 cut(s) 457, 578, 885
AgsI TTSAA 5 cut(s) 148, 242, 569, 650, 688
AjnI CCWGG 1 cut(s) 775
AluBI AGCT 6 cut(s) 142, 209, 257, 605, 839, 859
AluI AGCT 6 cut(s) 142, 209, 257, 605, 839, 859
Alw26I GTCTC 2 cut(s) 259, 481
AlwI GGATC 3 cut(s) 717, 866, 879
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 2 cut(s) 499, 831
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 2 cut(s) 564, 663
AspS9I GGNCC 1 cut(s) 832
AsuHPI GGTGA 3 cut(s) 77, 241, 977
AsuII TTCGAA 1 cut(s) 1025
BaeGI GKGCMC 1 cut(s) 310
BamHI GGATCC 1 cut(s) 871
BbvI GCAGC 1 cut(s) 266
BccI CCATC 7 cut(s) 55, 244, 451, 924, 955, 1007, 1010
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 777
BclI TGATCA 3 cut(s) 96, 189, 1050
BcoDI GTCTC 2 cut(s) 259, 481
BfaI CTAG 3 cut(s) 288, 734, 836
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 1 cut(s) 777
BmgT120I GGNCC 1 cut(s) 832
BmiI GGNNCC 2 cut(s) 873, 1000
BmrFI CCNGG 1 cut(s) 777
BmsI GCATC 4 cut(s) 144, 666, 818, 928
Bpu14I TTCGAA 1 cut(s) 1025
BpuEI CTTGAG 2 cut(s) 189, 1020
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 282, 694
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 578, 885
Bse1I ACTGG 1 cut(s) 873
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 777
BseDI CCNNGG 2 cut(s) 282, 694
BseGI GGATG 6 cut(s) 66, 277, 462, 555, 704, 809
BseLI CCNNNNNNNGG 3 cut(s) 457, 578, 885
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 3 cut(s) 213, 794, 831
BseNI ACTGG 1 cut(s) 873
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 1 cut(s) 266
BsgI GTGCAG 2 cut(s) 513, 998
Bsh1236I CGCG 1 cut(s) 547
BshFI GGCC 2 cut(s) 501, 833
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 3 cut(s) 457, 578, 885
BsmAI GTCTC 2 cut(s) 259, 481
BsmFI GGGAC 1 cut(s) 947
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 2 cut(s) 501, 833
Bso31I GGTCTC 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 1025
Bsp1286I GDGCHC 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 754
Bsp143I GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 3 cut(s) 227, 547, 885
BspANI GGCC 2 cut(s) 501, 833
BspCNI CTCAG 3 cut(s) 214, 795, 832
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 873, 1000
BspPI GGATC 3 cut(s) 717, 866, 879
BspT104I TTCGAA 1 cut(s) 1025
BspTNI GGTCTC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 754
BsrI ACTGG 1 cut(s) 873
BssECI CCNNGG 2 cut(s) 282, 694
BssMI GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
BssT1I CCWWGG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 1 cut(s) 515
Bst6I CTCTTC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 1025
BstDEI CTNAG 3 cut(s) 222, 803, 840
BstDSI CCRYGG 2 cut(s) 282, 694
BstF5I GGATG 6 cut(s) 66, 277, 462, 555, 704, 809
BstFNI CGCG 1 cut(s) 547
BstKTI GATC 6 cut(s) 58, 99, 192, 712, 874, 1053
BstMAI GTCTC 2 cut(s) 259, 481
BstMBI GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
BstMWI GCNNNNNNNGC 2 cut(s) 38, 527
BstNI CCWGG 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 775
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 266
BstX2I RGATCY 2 cut(s) 709, 871
BstYI RGATCY 2 cut(s) 709, 871
BsuRI GGCC 2 cut(s) 501, 833
BtgI CCRYGG 2 cut(s) 282, 694
BtsCI GGATG 6 cut(s) 66, 277, 462, 555, 704, 809
CaiI CAGNNNCTG 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 832
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 775
Csp6I GTAC 3 cut(s) 609, 755, 909
CviAII CATG 9 cut(s) 94, 187, 311, 362, 480, 578, 614, 668, 695
CviQI GTAC 3 cut(s) 609, 755, 909
DdeI CTNAG 3 cut(s) 222, 803, 840
DpnI GATC 6 cut(s) 57, 98, 191, 711, 873, 1052
DpnII GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 694
Eco147I AGGCCT 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 775
EcoT14I CCWWGG 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 694
FaeI CATG 9 cut(s) 97, 190, 314, 365, 483, 581, 617, 671, 698
FaqI GGGAC 1 cut(s) 947
FatI CATG 9 cut(s) 93, 186, 310, 361, 479, 577, 613, 667, 694
FauI CCCGC 1 cut(s) 878
FauNDI CATATG 1 cut(s) 745
FbaI TGATCA 3 cut(s) 96, 189, 1050
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 6 cut(s) 73, 284, 469, 562, 711, 796
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 3 cut(s) 288, 734, 836
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 2 cut(s) 501, 833
HapII CCGG 1 cut(s) 269
HgaI GACGC 1 cut(s) 140
Hin1II CATG 9 cut(s) 97, 190, 314, 365, 483, 581, 617, 671, 698
HincII GTYRAC 2 cut(s) 130, 511
HindII GTYRAC 2 cut(s) 130, 511
HindIII AAGCTT 2 cut(s) 140, 857
HinfI GANTC 7 cut(s) 232, 470, 524, 664, 718, 817, 1040
HpaII CCGG 1 cut(s) 269
HphI GGTGA 3 cut(s) 77, 241, 977
Hpy166II GTNNAC 4 cut(s) 130, 320, 343, 511
Hpy188I TCNGA 5 cut(s) 46, 60, 223, 389, 925
Hpy188III TCNNGA 3 cut(s) 242, 1037, 1044
Hpy8I GTNNAC 4 cut(s) 130, 320, 343, 511
HpyAV CCTTC 4 cut(s) 12, 427, 554, 885
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 5 cut(s) 414, 521, 530, 809, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 527
HpyF3I CTNAG 3 cut(s) 222, 803, 840
HpySE526I ACGT 1 cut(s) 584
Hsp92II CATG 9 cut(s) 97, 190, 314, 365, 483, 581, 617, 671, 698
Ksp22I TGATCA 3 cut(s) 96, 189, 1050
Kzo9I GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
LpnPI CCDG 8 cut(s) 87, 282, 483, 693, 711, 762, 789, 854
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 4 cut(s) 144, 666, 818, 928
MabI ACCWGGT 1 cut(s) 775
MaeI CTAG 3 cut(s) 288, 734, 836
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 2 cut(s) 197, 847
MalI GATC 6 cut(s) 57, 98, 191, 711, 873, 1052
MboI GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
MboII GAAGA 1 cut(s) 172
MflI RGATCY 2 cut(s) 709, 871
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 5 cut(s) 34, 492, 683, 889, 956
MlyI GAGTC 4 cut(s) 241, 464, 727, 1049
MmeI TCCRAC 2 cut(s) 367, 903
MnlI CCTC 6 cut(s) 156, 217, 328, 436, 786, 1044
MroXI GAANNNNTTC 2 cut(s) 564, 663
MslI CAYNNNNRTG 2 cut(s) 699, 825
MspA1I CMGCKG 1 cut(s) 885
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 1 cut(s) 777
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 2 cut(s) 38, 527
NcoI CCATGG 1 cut(s) 694
NdeI CATATG 1 cut(s) 745
NdeII GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
NlaIII CATG 9 cut(s) 97, 190, 314, 365, 483, 581, 617, 671, 698
NlaIV GGNNCC 2 cut(s) 873, 1000
NmuCI GTSAC 1 cut(s) 847
NspV TTCGAA 1 cut(s) 1025
PceI AGGCCT 1 cut(s) 501
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 564, 663
PfeI GAWTC 3 cut(s) 524, 664, 817
PflFI GACNNNGTC 1 cut(s) 473
PflMI CCANNNNNTGG 2 cut(s) 457, 578
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 4 cut(s) 240, 464, 726, 1048
PpsI GAGTC 4 cut(s) 240, 464, 726, 1048
Psp1406I AACGTT 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 775
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 2 cut(s) 873, 1000
PspPI GGNCC 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 2 cut(s) 709, 871
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 3 cut(s) 610, 756, 910
RsaNI GTAC 3 cut(s) 609, 755, 909
RseI CAYNNNNRTG 2 cut(s) 699, 825
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 6 cut(s) 55, 96, 189, 709, 871, 1050
Sau96I GGNCC 1 cut(s) 832
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 4 cut(s) 241, 464, 727, 1049
ScrFI CCNGG 1 cut(s) 777
SduI GDGCHC 1 cut(s) 310
SexAI ACCWGGT 1 cut(s) 775
SfaNI GCATC 4 cut(s) 144, 666, 818, 928
SfuI TTCGAA 1 cut(s) 1025
SmiMI CAYNNNNRTG 2 cut(s) 699, 825
SmlI CTYRAG 2 cut(s) 204, 1035
SmoI CTYRAG 2 cut(s) 204, 1035
Sse9I AATT 5 cut(s) 34, 492, 683, 889, 956
SseBI AGGCCT 1 cut(s) 501
SsiI CCGC 3 cut(s) 227, 547, 885
SspI AATATT 1 cut(s) 644
SspMI CTAG 3 cut(s) 288, 734, 836
StuI AGGCCT 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 775
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 1 cut(s) 515
TaiI ACGT 1 cut(s) 587
TaqI TCGA 3 cut(s) 534, 905, 1025
TasI AATT 5 cut(s) 34, 492, 683, 889, 956
TatI WGTACW 3 cut(s) 608, 754, 908
TfiI GAWTC 3 cut(s) 524, 664, 817
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 3 cut(s) 288, 656, 959
Tth111I GACNNNGTC 1 cut(s) 473
Van91I CCANNNNNTGG 2 cut(s) 457, 578
XapI RAATTY 1 cut(s) 34
XmnI GAANNNNTTC 2 cut(s) 564, 663
XspI CTAG 3 cut(s) 288, 734, 836
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.