Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013720

Physical Location & Seq

Genomic Coordinates Reverse (-)

64553999 .. 64554859

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATCACCGGTTATTCTCAAGCTAACCAACATGCTGAGGCGGTGAGTCTTTTTCGCGAAATGATGGCAGCTAATGTGAGGCCGGATAAAGTGACAGTGGCTAGTGTGCTTTCTGCTTGTGCGCATGTGGGTTCACTTGATGTGGGAGAGGCTGTGCACGAGTACATAAGGAAGCATGGAGTGAAAAAAGATGTTTATGTAGGGAACGCTTTGATAGATATGTATTGCAAATGTGGGGTGGCTGAGAAGGCATTGGCAGTGTTTCAAGGGATGGATAAGAAAGACTCGGTGTCATGGACTTCGGTAATCTCAGGCCTTGCGGTAAATGGTTTTGCCGATTCTGCTCATGGATTCTTCTCACAGATGTTGAGAGAAGGTATTCAACCAACTCATGGAACTTTTGTTGGGATTCTATTAGCTTGCGCTCATGCTGGATTAGTGGATGAGGGATTGGAATATTTCGAAAGCATGGAAAAGGTTCATGGACTAATGCCGGAGATGAAACACTACGGGTGCATTGTGGATATTTTGAGCCGTTCTGGTAAAGTGAAGGAGGCATATGAGTTCATGAAGAATATGCCTATCGTTCCAGATGTTGTAGTATGGAGAATTTTGCTGGGTGCTTGTCAAGTTCATGGAAATTTGGCCTTGGCTGAGATTGTGTCAAACAAGCTTATTGAATTGGACCCTTCTAACAGTGGGAACTATATTCTCTCATCAAATAACTATGCACTTTCACATAGATGGGATGGCGTTGCAAAAATGAGAGGATTGATGGACGAGAGTAACGTGCAGAAGCCATTTGGTAGTAGCTCCATTGAAATTAATGGTGCATTATCAAATCACTTATCTAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

286

Amino Acids

31.05

Weight (kDa)

6.04

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 42	5e-08	PPR repeat family
PPR_2	PF13041	94 - 142	3.8e-07	PPR repeat family
PPR	PF01535	97 - 127	5.3e-06	PPR repeat
E_motif	PF20431	212 - 274	5.3e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013720)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28852
malus_domestica	MD00G1005500.v1.1 MD01G1194500.v1.1
prunus_persica	Prupe.2G288700_v2.0.a1
pyrus_communis	pycom01g20500 pycom07g24060
rosa_chinensis	RchiOBHm_Chr1g0376541
rosa_laevigata	RLG00000026603
rosa_multiflora	Rmu_sc0001198.1_g000015 Rmu_sc0001308.1_g000012 Rmu_sc0005594.1_g000013 Rmu_sc0016049.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282020
rosa_rugosa	Rorug01G0396400
rosa_samantha	Rh1AG412900 Rh1BG372200 Rh1CG386000
rosa_wichuraiana	Rw1G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	123
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	41, 320
AcsI	RAATTY	2 cut(s)	609, 640
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	4 cut(s)	266, 383, 680, 821
AhdI	GACNNNNNGTC	1 cut(s)	289
AluBI	AGCT	5 cut(s)	23, 71, 419, 673, 813
AluI	AGCT	5 cut(s)	23, 71, 419, 673, 813
Alw21I	GWGCWC	1 cut(s)	159
Alw44I	GTGCAC	1 cut(s)	155
AoxI	GGCC	3 cut(s)	80, 313, 645
ApaLI	GTGCAC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	609, 640
AseI	ATTAAT	1 cut(s)	825
AsiGI	ACCGGT	1 cut(s)	8
Asp700I	GAANNNNTTC	2 cut(s)	378, 477
AspLEI	GCGC	2 cut(s)	124, 425
AspS9I	GGNCC	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	685
BaeGI	GKGCMC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	5 cut(s)	58, 265, 738, 743, 769
BceAI	ACGGC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	276, 448, 754
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	4 cut(s)	27, 234, 324, 645
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	812
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	82, 315, 647
BshTI	ACCGGT	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	9, 83, 494
BslI	CCNNNNNNNGG	1 cut(s)	392
BsnI	GGCC	3 cut(s)	82, 315, 647
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	3
Bsp68I	TCGCGA	1 cut(s)	57
BspACI	CCGC	2 cut(s)	41, 320
BspANI	GGCC	3 cut(s)	82, 315, 647
BspCNI	CTCAG	4 cut(s)	28, 235, 323, 646
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	687
BspT104I	TTCGAA	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	97, 698
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	4 cut(s)	36, 243, 310, 654
BstF5I	GGATG	3 cut(s)	276, 448, 754
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	124, 425
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 341
BstNSI	RCATGY	2 cut(s)	35, 128
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	82, 315, 647
BtsCI	GGATG	3 cut(s)	276, 448, 754
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	3 cut(s)	102, 264, 703
BtuMI	TCGCGA	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	421
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	2 cut(s)	124, 425
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	163
CspAI	ACCGGT	1 cut(s)	8
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	4 cut(s)	36, 243, 310, 654
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	648
Eco147I	AGGCCT	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FauNDI	CATATG	1 cut(s)	559
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	3 cut(s)	283, 455, 761
Fsp4HI	GCNGC	1 cut(s)	69
FspAI	RTGCGCAY	1 cut(s)	123
FspBI	CTAG	1 cut(s)	102
FspI	TGCGCA	1 cut(s)	123
GlaI	GCGC	2 cut(s)	123, 424
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	82, 315, 647
HapII	CCGG	3 cut(s)	9, 83, 494
HhaI	GCGC	2 cut(s)	124, 425
Hin6I	GCGC	2 cut(s)	122, 423
HinP1I	GCGC	2 cut(s)	122, 423
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	5 cut(s)	46, 284, 338, 351, 409
HpaII	CCGG	3 cut(s)	9, 83, 494
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	134, 157
Hpy188III	TCNNGA	3 cut(s)	56, 568, 590
Hpy8I	GTNNAC	2 cut(s)	134, 157
HpyAV	CCTTC	4 cut(s)	241, 368, 544, 699
HpyCH4III	ACNGT	2 cut(s)	97, 698
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	7 cut(s)	157, 228, 516, 731, 758, 793, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 341
HpyF3I	CTNAG	4 cut(s)	36, 243, 310, 654
HpySE526I	ACGT	1 cut(s)	789
HspAI	GCGC	2 cut(s)	122, 423
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	818
LpnPI	CCDG	8 cut(s)	22, 96, 297, 417, 507, 525, 602, 603
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	2 cut(s)	91, 785
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	346, 583
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	609, 640, 680, 822
MlyI	GAGTC	2 cut(s)	55, 278
MnlI	CCTC	6 cut(s)	31, 72, 142, 439, 547, 761
MroXI	GAANNNNTTC	2 cut(s)	378, 477
MseI	TTAA	1 cut(s)	825
MslI	CAYNNNNRTG	1 cut(s)	742
MspI	CCGG	3 cut(s)	9, 83, 494
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	248, 341
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	1 cut(s)	91
NruI	TCGCGA	1 cut(s)	57
NsbI	TGCGCA	1 cut(s)	123
NspI	RCATGY	2 cut(s)	35, 128
NspV	TTCGAA	1 cut(s)	462
PagI	TCATGA	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PdmI	GAANNNNTTC	2 cut(s)	378, 477
PfeI	GAWTC	3 cut(s)	338, 351, 409
PflMI	CCANNNNNTGG	1 cut(s)	392
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	54, 278
PpsI	GAGTC	2 cut(s)	54, 278
PshBI	ATTAAT	1 cut(s)	825
PspFI	CCCAGC	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	685
RruI	TCGCGA	1 cut(s)	57
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	742
SaqAI	TTAA	1 cut(s)	825
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	685
SchI	GAGTC	2 cut(s)	55, 278
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	25, 73, 379, 421, 480, 675, 792, 815
SfuI	TTCGAA	1 cut(s)	462
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	4 cut(s)	609, 640, 680, 822
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	41, 320
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	97, 698
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	1 cut(s)	462
TasI	AATT	4 cut(s)	609, 640, 680, 822
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	338, 351, 409
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	3 cut(s)	102, 264, 703
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	5 cut(s)	470, 515, 556, 584, 623
TspRI	CASTG	3 cut(s)	102, 264, 703
Van91I	CCANNNNNTGG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	685
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	2 cut(s)	609, 640
XceI	RCATGY	2 cut(s)	35, 128
XmnI	GAANNNNTTC	2 cut(s)	378, 477
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.