Rorug01G0396400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013720
Physical Location & Seq
Forward (+)
50596683 .. 50599557
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0396400.1

Sequence Viewer

Length: 1077 bp
ATGTTCACACTACTCTTCTCTTTGGCCACCTTGATAATCCTACCGCCATCTCCGATCAGTGCCTCCTCTCCATCTGTTTCTGCTCTCTTCGCTTTCGGCGATTCCACGGTGGATTCCGGCATGAACAACGACCTCCTGCCTTTCGTTCGGTGCGACCATCCCCCTTACGGCAGAGACCTGCCGGACCACGTCCCCACCGGAAGGTACTCCAATGGAAAGATTGCAACTGACTTTATGGCCTCAAACTTGGGACTCAAGGACCTCTTGCCTGCTTACCTCGACCCGAAACTGACCGACTATGATTTGCTCACCGGGGTCAGTTTCGCGTCGGGAACTTGCGGCCTAGATGATCTGACCTTGGAGTTGAGCCACGTCTATAGTATGGGGGATCAGTTGGAGTATTTTGATGAAGCCGTAGTGAGGATGAAGATAAGTGTTGGGGAAAAGAAGGGTAGAGAGATTGTGGAAAATGCACTGTTTGTGGTTAGTGTTGGGACGAATGACTTGATGCTGAACGTGTATGAGTTTCCACTAACCGAGAGGAAAACTCAGTTTACGTCTACAGACCAGTACTCTGATTTTCTGCTCCAGAGACTTGGGTCCTTTATTCAGGCTCTGTACAGTAGGGGAGCACGGCGGTTCATGGTGGCGGGTCTTCCACCGATCGGATGCCTTCCGCTTCAACAGACACTGAGCGGCATCATCAATCTGCGCCCTCAGCGCCTGTGCGTCACGCAGCAAAACATAGACTGTCAGACCTACAACTCCAAGCTCCAGGCCCTTCTCTCAAGTTTGCAAACCACATTACCACTCCCTAGTTCAAGGCTAGTCTATTTTGACATCTACAACCCCATCATGGACATGTACAACAACCCAGATAAATATGGGTTTGTGCATATACATGAAGGATGCTGTGGAACTGGGATGCTTGAGTTGGGGCCTCTGTGCACAGAGCTTTCGCGGACATGCCCCGACGCGTCGAAGTATCTTTTCTGGGATGCAGTTCATCCTACTGAAGCAGCATTTTTTGTTATTGCTGACTATGCTCATAAGACTGTCTTGCAGTACCTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

358

Amino Acids

39.72

Weight (kDa)

4.96

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 29 - 346 4.7e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AccBSI CCGCTC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 560
AccII CGCG 3 cut(s) 326, 961, 977
AciI CCGC 7 cut(s) 44, 339, 637, 650, 677, 696, 961
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 1035
AfaI GTAC 5 cut(s) 206, 572, 620, 866, 1067
AfiI CCNNNNNNNGG 5 cut(s) 167, 201, 420, 665, 856
AflIII ACRYGT 3 cut(s) 516, 861, 975
AgsI TTSAA 2 cut(s) 683, 822
AjiI CACGTC 2 cut(s) 190, 373
AjnI CCWGG 1 cut(s) 774
AluBI AGCT 2 cut(s) 772, 955
AluI AGCT 2 cut(s) 772, 955
Alw21I GWGCWC 2 cut(s) 634, 950
Alw26I GTCTC 2 cut(s) 168, 586
Alw44I GTGCAC 1 cut(s) 946
AlwI GGATC 1 cut(s) 396
AlwNI CAGNNNCTG 3 cut(s) 616, 691, 724
AoxI GGCC 5 cut(s) 24, 237, 340, 777, 938
ApaLI GTGCAC 1 cut(s) 946
ApeKI GCWGC 2 cut(s) 736, 1019
AspLEI GCGC 2 cut(s) 714, 723
AspS9I GGNCC 5 cut(s) 184, 259, 600, 778, 938
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 3 cut(s) 184, 259, 600
BaeGI GKGCMC 1 cut(s) 950
BalI TGGCCA 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 2 cut(s) 634, 950
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 748, 1031
BccI CCATC 4 cut(s) 55, 79, 165, 860
BceAI ACGGC 3 cut(s) 184, 398, 650
BciT130I CCWGG 1 cut(s) 776
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 168, 586
BfaI CTAG 3 cut(s) 344, 816, 827
BfmI CTRYAG 2 cut(s) 376, 561
BfoI RGCGCY 1 cut(s) 724
BfuAI ACCTGC 1 cut(s) 186
BisI GCNGC 4 cut(s) 340, 697, 737, 1020
BlsI GCNGC 4 cut(s) 341, 698, 738, 1021
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 313, 776
Bme18I GGWCC 3 cut(s) 184, 259, 600
BmgBI CACGTC 2 cut(s) 190, 373
BmgT120I GGNCC 5 cut(s) 184, 259, 600, 778, 938
BmiI GGNNCC 2 cut(s) 601, 939
BmrFI CCNGG 2 cut(s) 313, 776
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 6 cut(s) 498, 659, 708, 899, 915, 988
BmuI ACTGGG 1 cut(s) 930
BoxI GACNNNNGTC 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 647
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 2 cut(s) 572, 758
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 3 cut(s) 239, 772, 950
BpuMI CCSGG 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 105, 312, 357
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 201, 420, 665, 856
Bse1I ACTGG 2 cut(s) 568, 925
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 3 cut(s) 105, 312, 357
BseGI GGATG 7 cut(s) 157, 429, 674, 914, 930, 1003, 1006
BseLI CCNNNNNNNGG 5 cut(s) 167, 201, 420, 665, 856
BseMII CTCAG 3 cut(s) 563, 683, 731
BseNI ACTGG 2 cut(s) 568, 925
BseRI GAGGAG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 950
BseXI GCAGC 2 cut(s) 748, 1031
Bsh1236I CGCG 3 cut(s) 326, 961, 977
Bsh1285I CGRYCG 1 cut(s) 666
BshFI GGCC 5 cut(s) 26, 239, 342, 779, 940
BsiEI CGRYCG 1 cut(s) 666
BsiHKAI GWGCWC 2 cut(s) 634, 950
BsiSI CCGG 4 cut(s) 117, 182, 198, 312
BslFI GGGAC 3 cut(s) 176, 264, 508
BslI CCNNNNNNNGG 5 cut(s) 167, 201, 420, 665, 856
BsmAI GTCTC 2 cut(s) 168, 586
BsmFI GGGAC 3 cut(s) 176, 264, 508
BsnI GGCC 5 cut(s) 26, 239, 342, 779, 940
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 634, 950
Bsp1407I TGTACA 2 cut(s) 618, 864
Bsp143I GATC 4 cut(s) 54, 349, 388, 663
BspACI CCGC 7 cut(s) 44, 339, 637, 650, 677, 696, 961
BspANI GGCC 5 cut(s) 26, 239, 342, 779, 940
BspCNI CTCAG 3 cut(s) 562, 684, 730
BspFNI CGCG 3 cut(s) 326, 961, 977
BspLI GGNNCC 2 cut(s) 601, 939
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 696
BsrGI TGTACA 2 cut(s) 618, 864
BsrI ACTGG 2 cut(s) 568, 925
BssECI CCNNGG 3 cut(s) 105, 312, 357
BssMI GATC 4 cut(s) 54, 349, 388, 663
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 5 cut(s) 109, 477, 623, 752, 1057
Bst6I CTCTTC 2 cut(s) 20, 92
BstAUI TGTACA 2 cut(s) 618, 864
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 4 cut(s) 549, 692, 717, 1070
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 7 cut(s) 157, 429, 674, 914, 930, 1003, 1006
BstFNI CGCG 3 cut(s) 326, 961, 977
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 2 cut(s) 714, 723
BstKTI GATC 4 cut(s) 57, 352, 391, 666
BstMAI GTCTC 2 cut(s) 168, 586
BstMBI GATC 4 cut(s) 54, 349, 388, 663
BstMCI CGRYCG 1 cut(s) 666
BstMWI GCNNNNNNNGC 4 cut(s) 89, 718, 720, 1043
BstNI CCWGG 1 cut(s) 776
BstNSI RCATGY 2 cut(s) 865, 969
BstPAI GACNNNNGTC 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 311, 774
BstSFI CTRYAG 2 cut(s) 376, 561
BstSLI GKGCMC 1 cut(s) 950
BstUI CGCG 3 cut(s) 326, 961, 977
BstV1I GCAGC 2 cut(s) 748, 1031
BstV2I GAAGAC 1 cut(s) 647
BstXI CCANNNNNNTGG 1 cut(s) 596
BsuRI GGCC 5 cut(s) 26, 239, 342, 779, 940
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 2 cut(s) 190, 373
BtsCI GGATG 7 cut(s) 157, 429, 674, 914, 930, 1003, 1006
BtsIMutI CAGTG 3 cut(s) 64, 473, 689
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 3 cut(s) 616, 691, 724
CfoI GCGC 2 cut(s) 714, 723
Cfr13I GGNCC 5 cut(s) 184, 259, 600, 778, 938
CseI GACGC 4 cut(s) 315, 718, 966, 983
Csp6I GTAC 5 cut(s) 205, 571, 619, 865, 1066
CviAII CATG 6 cut(s) 121, 643, 856, 862, 902, 966
CviQI GTAC 5 cut(s) 205, 571, 619, 865, 1066
DdeI CTNAG 4 cut(s) 549, 692, 717, 1070
DpnI GATC 4 cut(s) 56, 351, 390, 665
DpnII GATC 4 cut(s) 54, 349, 388, 663
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 20, 92
EarI CTCTTC 2 cut(s) 20, 92
Eco130I CCWWGG 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 184, 259, 600
Eco57I CTGAAG 1 cut(s) 1035
EcoO109I RGGNCCY 4 cut(s) 259, 600, 778, 938
EcoRII CCWGG 1 cut(s) 774
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 6 cut(s) 124, 646, 859, 865, 905, 969
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 1043, 1075
FaqI GGGAC 3 cut(s) 176, 264, 508
FatI CATG 6 cut(s) 120, 642, 855, 861, 901, 965
FauI CCCGC 1 cut(s) 643
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 4 cut(s) 340, 697, 737, 1020
FokI GGATG 7 cut(s) 144, 436, 681, 921, 937, 993, 1010
Fsp4HI GCNGC 4 cut(s) 340, 697, 737, 1020
FspBI CTAG 3 cut(s) 344, 816, 827
GlaI GCGC 2 cut(s) 713, 722
GluI GCNGC 4 cut(s) 340, 697, 737, 1020
GsuI CTGGAG 2 cut(s) 572, 758
HaeII RGCGCY 1 cut(s) 724
HaeIII GGCC 5 cut(s) 26, 239, 342, 779, 940
HapII CCGG 4 cut(s) 117, 182, 198, 312
HgaI GACGC 4 cut(s) 315, 718, 966, 983
HhaI GCGC 2 cut(s) 714, 723
Hin1II CATG 6 cut(s) 124, 646, 859, 865, 905, 969
Hin6I GCGC 2 cut(s) 712, 721
HinP1I GCGC 2 cut(s) 712, 721
HinfI GANTC 3 cut(s) 101, 113, 252
HpaII CCGG 4 cut(s) 117, 182, 198, 312
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 4 cut(s) 6, 555, 561, 948
Hpy188I TCNGA 5 cut(s) 54, 354, 577, 668, 756
Hpy188III TCNNGA 2 cut(s) 330, 589
Hpy8I GTNNAC 4 cut(s) 6, 555, 561, 948
Hpy99I CGWCG 3 cut(s) 331, 977, 982
HpyAV CCTTC 5 cut(s) 195, 442, 683, 791, 899
HpyCH4III ACNGT 5 cut(s) 109, 477, 623, 752, 1057
HpyCH4IV ACGT 4 cut(s) 189, 372, 516, 557
HpyCH4V TGCA 7 cut(s) 224, 473, 796, 895, 948, 1001, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 718, 720, 1043
HpyF3I CTNAG 4 cut(s) 549, 692, 717, 1070
HpySE526I ACGT 4 cut(s) 189, 372, 516, 557
Hsp92II CATG 6 cut(s) 124, 646, 859, 865, 905, 969
HspAI GCGC 2 cut(s) 712, 721
Kzo9I GATC 4 cut(s) 54, 349, 388, 663
LmnI GCTCC 3 cut(s) 591, 629, 777
Lsp1109I GCAGC 2 cut(s) 748, 1031
LweI GCATC 6 cut(s) 498, 659, 708, 899, 915, 988
MaeI CTAG 3 cut(s) 344, 816, 827
MaeII ACGT 4 cut(s) 189, 372, 516, 557
MaeIII GTNAC 1 cut(s) 730
MalI GATC 4 cut(s) 56, 351, 390, 665
MbiI CCGCTC 1 cut(s) 696
MboI GATC 4 cut(s) 54, 349, 388, 663
MboII GAAGA 4 cut(s) 7, 79, 439, 647
MhlI GDGCHC 2 cut(s) 634, 950
MlsI TGGCCA 1 cut(s) 26
MluI ACGCGT 1 cut(s) 975
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 375
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 860, 900
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 4 cut(s) 117, 182, 198, 312
MspR9I CCNGG 2 cut(s) 313, 776
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 3 cut(s) 326, 961, 977
MwoI GCNNNNNNNGC 4 cut(s) 89, 718, 720, 1043
NciI CCSGG 1 cut(s) 313
NdeII GATC 4 cut(s) 54, 349, 388, 663
NlaIII CATG 6 cut(s) 124, 646, 859, 865, 905, 969
NlaIV GGNNCC 2 cut(s) 601, 939
NmuCI GTSAC 1 cut(s) 730
NspI RCATGY 2 cut(s) 865, 969
PciI ACATGT 1 cut(s) 861
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 150
PfeI GAWTC 2 cut(s) 101, 113
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 341, 698, 738, 1021
Ple19I CGATCG 1 cut(s) 666
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PpuMI RGGWCCY 2 cut(s) 259, 600
PscI ACATGT 1 cut(s) 861
PshAI GACNNNNGTC 1 cut(s) 598
Psp5II RGGWCCY 2 cut(s) 259, 600
Psp6I CCWGG 1 cut(s) 774
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 2 cut(s) 601, 939
PspPI GGNCC 5 cut(s) 184, 259, 600, 778, 938
PspPPI RGGWCCY 2 cut(s) 259, 600
PstNI CAGNNNCTG 3 cut(s) 616, 691, 724
PsyI GACNNNGTC 1 cut(s) 188
PvuI CGATCG 1 cut(s) 666
RsaI GTAC 5 cut(s) 206, 572, 620, 866, 1067
RsaNI GTAC 5 cut(s) 205, 571, 619, 865, 1066
RseI CAYNNNNRTG 2 cut(s) 860, 900
SatI GCNGC 4 cut(s) 340, 697, 737, 1020
Sau3AI GATC 4 cut(s) 54, 349, 388, 663
Sau96I GGNCC 5 cut(s) 184, 259, 600, 778, 938
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 313, 776
SduI GDGCHC 2 cut(s) 634, 950
SfaNI GCATC 6 cut(s) 498, 659, 708, 899, 915, 988
SfcI CTRYAG 2 cut(s) 376, 561
SinI GGWCC 3 cut(s) 184, 259, 600
SmiMI CAYNNNNRTG 2 cut(s) 860, 900
SmlI CTYRAG 3 cut(s) 254, 787, 929
SmoI CTYRAG 3 cut(s) 254, 787, 929
SsiI CCGC 7 cut(s) 44, 339, 637, 650, 677, 696, 961
SspMI CTAG 3 cut(s) 344, 816, 827
StyD4I CCNGG 2 cut(s) 311, 774
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 5 cut(s) 109, 477, 623, 752, 1057
TaiI ACGT 4 cut(s) 192, 375, 519, 560
TaqI TCGA 2 cut(s) 279, 980
TaqII GACCGA 1 cut(s) 308
TatI WGTACW 3 cut(s) 570, 618, 864
TauI GCSGC 2 cut(s) 342, 699
TfiI GAWTC 2 cut(s) 101, 113
TscAI CASTG 3 cut(s) 64, 480, 696
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 2 cut(s) 736, 1019
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 6 cut(s) 137, 423, 440, 631, 918, 995
TspRI CASTG 3 cut(s) 64, 480, 696
Tth111I GACNNNGTC 1 cut(s) 188
VneI GTGCAC 1 cut(s) 946
VpaK11BI GGWCC 3 cut(s) 184, 259, 600
XceI RCATGY 2 cut(s) 865, 969
XmiI GTMKAC 1 cut(s) 560
XspI CTAG 3 cut(s) 344, 816, 827
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.