Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016049.1

Orthogroup ID

OG0013720

Physical Location & Seq

Genomic Coordinates Forward (+)

21546 .. 22979

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016049.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgaaccgcgcaaaacccatttcgcgccacctgagcaccaccgcggcgccgccaaaaccaccgatctccaccttggcctcagccaaagagcttcacgcacatctcatcagaacccacctccacaaagacccatcttcaatctccgacgttctcagatactacgcactatctccaccatacttgaacaaagcccgtttcgtcttcaatcaaatcgagcgacccacattgatggtttggaacctcatgatccgtggactatcacagagtgaaaaacccagtgaagcaattcacatgcatagccgaatgaggcgagaaggattggttgggaataatttgagctttatattcattttcaaggcctgtgctcgtgtttcggatgttgtatctggccaaaaggctcaagcttgtgtagtgaaacttgggttcgaatcgtatctttatgtttccaatgctttggttcatatgtattcgagttgtggtgatttgggttgtgcccggaacgtgtttgatgaaatgcgtgagagagatttggtttcgtggaattctttgatatgtgggtatagtcagtgcaataggtataaggaggttttgggtctttttgaggcgatgaaagtaacggagaatgtgagggctgatgcggtgacgatggtgaaggttgttttggcatgtattcagttgggtgaatgggaaattgcggattgtatggtgaagtatgtggaagaaaatcgtgttggtgttgatgtttacttggggaatacgatgatagatatgtatggacggcgtggtttgccgcatttggctcgggaagtgtttgattggatgcgtgagaggaatgtagtatcatggaatgctatgatcaatggatatgcaaaagtggggaacttggtggattcaagaaagctttttgataggatgccaaatagggatgtgatctcttggacatccatgatcaccggttattctcaagctaaccaacatgctgaggcggtgagtctttttcgcgaaatgatggcagctaaagtgaggccggataaagtgacagtggctagtgtgctttctgcttgtgcgcatgtgggttcacttgatgtgggagaggctgtgcacgagtacataaggaagcatggagtgaaaaaagatgtttatgtagggaacgctttgatagatatgtattgcaaatgtggggtggctgagaaggcattggcagtgtttcaagggatggataagaaagactcggtgtcatggacttcggtaatctcaggccttgcggtaaatggttttgccgattctgctcatggattcttctcacagatgttgagagaaggtattcaaccaactcatggaacttttgctgggattcttttagcttgtgctcttgccggattagtggataagggattggaatattttgaaagcatggaaaagattcatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

477

Amino Acids

53.21

Weight (kDa)

8.7

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013720)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28852
malus_domestica	MD00G1005500.v1.1 MD01G1194500.v1.1
prunus_persica	Prupe.2G288700_v2.0.a1
pyrus_communis	pycom01g20500 pycom07g24060
rosa_chinensis	RchiOBHm_Chr1g0376541
rosa_laevigata	RLG00000026603
rosa_multiflora	Rmu_sc0001198.1_g000015 Rmu_sc0001308.1_g000012 Rmu_sc0005594.1_g000013 Rmu_sc0016049.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282020
rosa_rugosa	Rorug01G0396400
rosa_samantha	Rh1AG412900 Rh1BG372200 Rh1CG386000
rosa_wichuraiana	Rw1G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1068
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	1337
AccII	CGCG	4 cut(s)	9, 25, 44, 1002
AciI	CCGC	9 cut(s)	7, 42, 44, 50, 638, 695, 791, 986, 1265
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	1109
AfiI	CCNNNNNNNGG	1 cut(s)	1337
AflIII	ACRYGT	1 cut(s)	501
AgeI	ACCGGT	1 cut(s)	953
AgsI	TTSAA	8 cut(s)	138, 184, 205, 355, 894, 1211, 1328, 1409
AhdI	GACNNNNNGTC	1 cut(s)	1234
AjuI	GAANNNNNNNTTGG	6 cut(s)	306, 338, 644, 676, 714, 746
AluBI	AGCT	7 cut(s)	91, 339, 404, 901, 968, 1016, 1364
AluI	AGCT	7 cut(s)	91, 339, 404, 901, 968, 1016, 1364
Alw21I	GWGCWC	4 cut(s)	38, 367, 1104, 1372
Alw44I	GTGCAC	1 cut(s)	1100
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	801
AoxI	GGCC	5 cut(s)	75, 357, 388, 1025, 1258
ApaLI	GTGCAC	1 cut(s)	1100
ApeKI	GCWGC	1 cut(s)	1013
ApoI	RAATTY	1 cut(s)	541
AsiGI	ACCGGT	1 cut(s)	953
Asp700I	GAANNNNTTC	3 cut(s)	285, 1323, 1422
AspLEI	GCGC	4 cut(s)	11, 27, 49, 1069
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	7 cut(s)	491, 652, 661, 692, 718, 943, 1000
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	801
BaeGI	GKGCMC	2 cut(s)	496, 1104
BalI	TGGCCA	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	366, 1103
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	4 cut(s)	38, 367, 1104, 1372
BbvCI	CCTCAGC	2 cut(s)	79, 981
BbvI	GCAGC	1 cut(s)	1025
BccI	CCATC	5 cut(s)	139, 223, 640, 1003, 1210
BceAI	ACGGC	1 cut(s)	794
BcgI	CGANNNNNNTGC	2 cut(s)	782, 816
BclI	TGATCA	2 cut(s)	855, 948
BcnI	CCSGG	1 cut(s)	496
BfaI	CTAG	1 cut(s)	1047
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	4 cut(s)	45, 50, 791, 1014
BlsI	GCNGC	4 cut(s)	46, 51, 792, 1015
Bme1390I	CCNGG	1 cut(s)	496
BmeRI	GACNNNNNGTC	1 cut(s)	1234
BmeT110I	CYCGRG	1 cut(s)	801
BmiI	GGNNCC	2 cut(s)	48, 239
BmrFI	CCNGG	1 cut(s)	496
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	625, 810, 903
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	193
Bpu10I	CCTNAGC	3 cut(s)	32, 79, 981
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	384, 948
BpuMI	CCSGG	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	42, 72, 250
BsaWI	WCCGGW	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	1337
Bse118I	RCCGGY	1 cut(s)	953
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	42, 72, 250
BseGI	GGATG	6 cut(s)	382, 825, 918, 931, 941, 1221
BseLI	CCNNNNNNNGG	1 cut(s)	1337
BseMII	CTCAG	6 cut(s)	23, 93, 166, 972, 1179, 1269
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	2 cut(s)	496, 1104
BseXI	GCAGC	1 cut(s)	1025
BseYI	CCCAGC	1 cut(s)	1349
Bsh1236I	CGCG	4 cut(s)	9, 25, 44, 1002
BshFI	GGCC	5 cut(s)	77, 359, 390, 1027, 1260
BshNI	GGYRCC	1 cut(s)	46
BshTI	ACCGGT	1 cut(s)	953
BsiHKAI	GWGCWC	4 cut(s)	38, 367, 1104, 1372
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	4 cut(s)	496, 954, 1028, 1377
BslI	CCNNNNNNNGG	1 cut(s)	1337
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	5 cut(s)	77, 359, 390, 1027, 1260
BsoBI	CYCGRG	1 cut(s)	801
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	5 cut(s)	38, 367, 496, 1104, 1372
Bsp143I	GATC	5 cut(s)	63, 246, 855, 930, 948
Bsp68I	TCGCGA	1 cut(s)	1002
BspACI	CCGC	9 cut(s)	7, 42, 44, 50, 638, 695, 791, 986, 1265
BspANI	GGCC	5 cut(s)	77, 359, 390, 1027, 1260
BspCNI	CTCAG	6 cut(s)	24, 92, 165, 973, 1180, 1268
BspFNI	CGCG	4 cut(s)	9, 25, 44, 1002
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	48, 239
BspPI	GGATC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	953
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	953
BssECI	CCNNGG	3 cut(s)	42, 72, 250
BssMI	GATC	5 cut(s)	63, 246, 855, 930, 948
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	2 cut(s)	366, 1103
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	2 cut(s)	366, 1103
Bst4CI	ACNGT	1 cut(s)	1042
BstACI	GRCGYC	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	426
BstDEI	CTNAG	6 cut(s)	32, 79, 152, 981, 1188, 1255
BstDSI	CCRYGG	2 cut(s)	42, 250
BstF5I	GGATG	6 cut(s)	382, 825, 918, 931, 941, 1221
BstFNI	CGCG	4 cut(s)	9, 25, 44, 1002
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	4 cut(s)	11, 27, 49, 1069
BstKTI	GATC	5 cut(s)	66, 249, 858, 933, 951
BstMBI	GATC	5 cut(s)	63, 246, 855, 930, 948
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 787, 1193, 1286
BstNSI	RCATGY	4 cut(s)	295, 669, 980, 1073
BstSCI	CCNGG	1 cut(s)	494
BstSLI	GKGCMC	2 cut(s)	496, 1104
BstUI	CGCG	4 cut(s)	9, 25, 44, 1002
BstV1I	GCAGC	1 cut(s)	1025
BstV2I	GAAGAC	1 cut(s)	193
BstXI	CCANNNNNNTGG	2 cut(s)	229, 454
BsuRI	GGCC	5 cut(s)	77, 359, 390, 1027, 1260
BtgI	CCRYGG	2 cut(s)	42, 250
BtgZI	GCGATG	1 cut(s)	620
BtsCI	GGATG	6 cut(s)	382, 825, 918, 931, 941, 1221
BtsI	GCAGTG	1 cut(s)	1209
BtsIMutI	CAGTG	4 cut(s)	283, 572, 1047, 1209
BtuMI	TCGCGA	1 cut(s)	1002
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	4 cut(s)	11, 27, 49, 1069
Cfr10I	RCCGGY	1 cut(s)	953
Cfr42I	CCGCGG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	1108
CspAI	ACCGGT	1 cut(s)	953
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviQI	GTAC	1 cut(s)	1108
DdeI	CTNAG	6 cut(s)	32, 79, 152, 981, 1188, 1255
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	5 cut(s)	65, 248, 857, 932, 950
DpnII	GATC	5 cut(s)	63, 246, 855, 930, 948
DraIII	CACNNNGTG	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	1234
EaeI	YGGCCR	1 cut(s)	388
Eam1105I	GACNNNNNGTC	1 cut(s)	1234
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	2 cut(s)	359, 1260
Eco88I	CYCGRG	1 cut(s)	801
EcoRI	GAATTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	72
FauNDI	CATATG	1 cut(s)	462
FbaI	TGATCA	2 cut(s)	855, 948
Fnu4HI	GCNGC	4 cut(s)	45, 50, 791, 1014
FokI	GGATG	6 cut(s)	389, 832, 925, 928, 938, 1228
Fsp4HI	GCNGC	4 cut(s)	45, 50, 791, 1014
FspAI	RTGCGCAY	1 cut(s)	1068
FspBI	CTAG	1 cut(s)	1047
FspI	TGCGCA	1 cut(s)	1068
GlaI	GCGC	4 cut(s)	10, 26, 48, 1068
GluI	GCNGC	4 cut(s)	45, 50, 791, 1014
GsaI	CCCAGC	1 cut(s)	1353
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	5 cut(s)	77, 359, 390, 1027, 1260
HapII	CCGG	4 cut(s)	496, 954, 1028, 1377
HhaI	GCGC	4 cut(s)	11, 27, 49, 1069
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	4 cut(s)	9, 25, 47, 1067
HinP1I	GCGC	4 cut(s)	9, 25, 47, 1067
HindIII	AAGCTT	2 cut(s)	402, 899
HinfI	GANTC	8 cut(s)	428, 890, 991, 1229, 1283, 1296, 1354, 1423
HpaII	CCGG	4 cut(s)	496, 954, 1028, 1377
HphI	GGTGA	7 cut(s)	491, 652, 661, 692, 718, 943, 1000
Hpy166II	GTNNAC	4 cut(s)	254, 745, 1079, 1102
Hpy188I	TCNGA	4 cut(s)	110, 145, 155, 376
Hpy188III	TCNNGA	4 cut(s)	244, 803, 894, 1001
Hpy8I	GTNNAC	4 cut(s)	254, 745, 1079, 1102
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	308, 646, 1186, 1313
HpyCH4III	ACNGT	1 cut(s)	1042
HpyCH4IV	ACGT	2 cut(s)	147, 501
HpyCH4V	TGCA	5 cut(s)	295, 570, 869, 1102, 1173
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 787, 1193, 1286
HpyF3I	CTNAG	6 cut(s)	32, 79, 152, 981, 1188, 1255
HpySE526I	ACGT	2 cut(s)	147, 501
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	4 cut(s)	9, 25, 47, 1067
KasI	GGCGCC	1 cut(s)	46
Ksp22I	TGATCA	2 cut(s)	855, 948
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	63, 246, 855, 930, 948
Lsp1109I	GCAGC	1 cut(s)	1025
LweI	GCATC	3 cut(s)	625, 810, 903
MaeI	CTAG	1 cut(s)	1047
MaeII	ACGT	2 cut(s)	147, 501
MaeIII	GTNAC	3 cut(s)	613, 640, 1036
MalI	GATC	5 cut(s)	65, 248, 857, 932, 950
MboI	GATC	5 cut(s)	63, 246, 855, 930, 948
MboII	GAAGA	4 cut(s)	126, 193, 731, 1291
MhlI	GDGCHC	5 cut(s)	38, 367, 496, 1104, 1372
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	4 cut(s)	285, 331, 541, 690
MluNI	TGGCCA	1 cut(s)	390
Mly113I	GGCGCC	1 cut(s)	47
MlyI	GAGTC	2 cut(s)	1000, 1223
MmeI	TCCRAC	1 cut(s)	168
Mox20I	TGGCCA	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	297
MroXI	GAANNNNTTC	3 cut(s)	285, 1323, 1422
MscI	TGGCCA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	4 cut(s)	496, 954, 1028, 1377
MspR9I	CCNGG	1 cut(s)	496
Mva1269I	GAATGC	1 cut(s)	853
MvnI	CGCG	4 cut(s)	9, 25, 44, 1002
MwoI	GCNNNNNNNGC	4 cut(s)	33, 787, 1193, 1286
NarI	GGCGCC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	496
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	5 cut(s)	63, 246, 855, 930, 948
NlaIV	GGNNCC	2 cut(s)	48, 239
NmuCI	GTSAC	2 cut(s)	640, 1036
NruI	TCGCGA	1 cut(s)	1002
NsbI	TGCGCA	1 cut(s)	1068
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	4 cut(s)	295, 669, 980, 1073
NspV	TTCGAA	1 cut(s)	426
PagI	TCATGA	1 cut(s)	243
PceI	AGGCCT	2 cut(s)	359, 1260
PctI	GAATGC	1 cut(s)	853
PdmI	GAANNNNTTC	3 cut(s)	285, 1323, 1422
PfeI	GAWTC	6 cut(s)	428, 890, 1283, 1296, 1354, 1423
PflMI	CCANNNNNTGG	1 cut(s)	1337
PinAI	ACCGGT	1 cut(s)	953
PkrI	GCNGC	4 cut(s)	46, 51, 792, 1015
PleI	GAGTC	2 cut(s)	999, 1223
PluTI	GGCGCC	1 cut(s)	50
PpsI	GAGTC	2 cut(s)	999, 1223
PspFI	CCCAGC	1 cut(s)	1349
PspN4I	GGNNCC	2 cut(s)	48, 239
RruI	TCGCGA	1 cut(s)	1002
RsaI	GTAC	1 cut(s)	1109
RsaNI	GTAC	1 cut(s)	1108
RseI	CAYNNNNRTG	1 cut(s)	227
SacII	CCGCGG	1 cut(s)	45
SatI	GCNGC	4 cut(s)	45, 50, 791, 1014
Sau3AI	GATC	5 cut(s)	63, 246, 855, 930, 948
SchI	GAGTC	2 cut(s)	1000, 1223
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	5 cut(s)	38, 367, 496, 1104, 1372
SfaNI	GCATC	3 cut(s)	625, 810, 903
SfoI	GGCGCC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	426
SgrBI	CCGCGG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	399, 963
SmoI	CTYRAG	2 cut(s)	399, 963
Sse9I	AATT	4 cut(s)	285, 331, 541, 690
SseBI	AGGCCT	2 cut(s)	359, 1260
SsiI	CCGC	9 cut(s)	7, 42, 44, 50, 638, 695, 791, 986, 1265
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	1 cut(s)	1403
SspMI	CTAG	1 cut(s)	1047
StuI	AGGCCT	2 cut(s)	359, 1260
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	1042
TaiI	ACGT	2 cut(s)	150, 504
TaqI	TCGA	3 cut(s)	213, 426, 470
TasI	AATT	4 cut(s)	285, 331, 541, 690
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	3 cut(s)	47, 52, 793
TfiI	GAWTC	6 cut(s)	428, 890, 1283, 1296, 1354, 1423
TscAI	CASTG	4 cut(s)	283, 572, 1047, 1209
TseFI	GTSAC	2 cut(s)	640, 1036
TseI	GCWGC	1 cut(s)	1013
Tsp45I	GTSAC	2 cut(s)	640, 1036
TspDTI	ATGAA	6 cut(s)	17, 337, 449, 525, 623, 1415
TspGWI	ACGGA	2 cut(s)	239, 632
TspRI	CASTG	4 cut(s)	283, 572, 1047, 1209
Van91I	CCANNNNNTGG	1 cut(s)	1337
VneI	GTGCAC	1 cut(s)	1100
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	4 cut(s)	295, 669, 980, 1073
XmnI	GAANNNNTTC	3 cut(s)	285, 1323, 1422
XspI	CTAG	1 cut(s)	1047
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.