pycom02g02490

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013473
Physical Location & Seq
Forward (+)
1543435 .. 1544523
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
ATGGAAGGTGGAGTAAAGGGTGTTGAATATCAAGCCCAGCCAAGAGATGCTTACAAGATTGCTTACATTATTCATTTCTTGCTGGGAGCAGGTAATTTGCTTCCTTGGAATGCATTCATCACCGCCGTTGATTATTTCGGGCATCTCTATCCCACCAAGCATGTCGAGAAGGTCTTCTCTGTCGCTTACATGAGTTCTTCGGTACTCGTATTGCTTGTGATGATGACATGGAGTGGCTGGTGGGAGAAGATGAGTCCTAGGCTGAGACTCAACTTGGGATTTTCTCTGTTTGTTCTCTCGTTAATGGTGGCTCCAATTACGGACTGGCTTTCGCACAGTTCTGCGTTGAGTAGTGGGAGAGCTAATGCAGGTTATGGCGTGACAGTTGCATCAGTTGTATTGTGTGGCTTAGCTGATGGCTTGGTAGGAGGAAGCTTGATGGGATCCATCGGCAAGCTTCCGAAAAAATACATGCAAGCTGTTTTTGCAGGAACCGCTTCTTCAGGTGTGATAATTTCTCTGCTGAGGATTTCAACCAAGGCGATGCTTCCACAAACCCCGAAGGGACTACAAACAAGCGCGCACTTGTACTTCATCGTCAGCACCATGTTCCTCCTGTGCTGCATCCTCGCCTGCAACTTGTTATACAGGTTGACAGTCATGCAGGAACACTGCAGGCTTGCTCAAGAAGAACCTTCTTGCGCAAGACCAAAATTTTGGGACCTGGCGCGAAAAATCCCCGTGCCAGCTTTTGGGATTTTCGTAACCTATACAGTGACTCTGTCGATTTTTCCAGGATTTATTGCCGAAGATCTCGAATCCAATCTTTTTCGAGATTGGTATCCTATTTTAAGAGAGGCTGATCACAGTGTACAATGTTGCAGATTTAGTGGGAAAATCATTGACTGCAGTATATCTTCTAAAGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

311

Amino Acids

34.24

Weight (kDa)

8.8

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 130 - 228 3.4e-20 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 703
Acc36I ACCTGC 2 cut(s) 80, 359
AccB7I CCANNNNNTGG 1 cut(s) 752
AccII CGCG 2 cut(s) 581, 730
AciI CCGC 2 cut(s) 123, 495
AclWI GGATC 2 cut(s) 438, 451
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 3 cut(s) 204, 590, 873
AfiI CCNNNNNNNGG 1 cut(s) 752
AgsI TTSAA 2 cut(s) 26, 534
AjnI CCWGG 2 cut(s) 723, 793
AluBI AGCT 6 cut(s) 362, 413, 435, 457, 479, 749
AluI AGCT 6 cut(s) 362, 413, 435, 457, 479, 749
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 438, 451
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 1 cut(s) 713
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
Asp700I GAANNNNTTC 3 cut(s) 113, 173, 496
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 4 cut(s) 581, 583, 704, 730
AspS9I GGNCC 1 cut(s) 721
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 721
AvrII CCTAGG 1 cut(s) 257
BamHI GGATCC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 410, 433, 455
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 725, 795
BciVI GTATCC 1 cut(s) 852
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 2 cut(s) 673, 907
BfuAI ACCTGC 2 cut(s) 80, 359
BfuI GTATCC 1 cut(s) 852
BglII AGATCT 1 cut(s) 811
BisI GCNGC 1 cut(s) 622
BlnI CCTAGG 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 623
Bme1390I CCNGG 2 cut(s) 725, 795
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 4 cut(s) 312, 445, 493, 722
BmrFI CCNGG 2 cut(s) 725, 795
BmsI GCATC 5 cut(s) 37, 151, 398, 534, 633
BpiI GAAGAC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 104, 257, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 840
BseBI CCWGG 2 cut(s) 725, 795
BseDI CCNNGG 3 cut(s) 104, 257, 537
BseGI GGATG 1 cut(s) 624
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMII CTCAG 2 cut(s) 254, 515
BseNI ACTGG 1 cut(s) 329
BsePI GCGCGC 1 cut(s) 579
BseXI GCAGC 1 cut(s) 608
BseYI CCCAGC 2 cut(s) 36, 82
Bsh1236I CGCG 2 cut(s) 581, 730
BslFI GGGAC 2 cut(s) 579, 734
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 579, 734
BsmI GAATGC 2 cut(s) 113, 115
Bsp1407I TGTACA 1 cut(s) 871
Bsp143I GATC 3 cut(s) 443, 811, 862
Bsp1720I GCTNAGC 1 cut(s) 409
BspACI CCGC 2 cut(s) 123, 495
BspCNI CTCAG 2 cut(s) 255, 516
BspFNI CGCG 2 cut(s) 581, 730
BspLI GGNNCC 4 cut(s) 312, 445, 493, 722
BspMAI CTGCAG 2 cut(s) 677, 911
BspMI ACCTGC 2 cut(s) 80, 359
BspPI GGATC 2 cut(s) 438, 451
BsrGI TGTACA 1 cut(s) 871
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 104, 257, 537
BssHII GCGCGC 1 cut(s) 579
BssMI GATC 3 cut(s) 443, 811, 862
BssT1I CCWWGG 3 cut(s) 104, 257, 537
Bst2UI CCWGG 2 cut(s) 725, 795
Bst4CI ACNGT 5 cut(s) 338, 385, 658, 775, 869
BstAUI TGTACA 1 cut(s) 871
BstC8I GCNNGC 7 cut(s) 455, 477, 581, 634, 677, 681, 747
BstDEI CTNAG 3 cut(s) 263, 409, 524
BstF5I GGATG 1 cut(s) 624
BstFNI CGCG 2 cut(s) 581, 730
BstHHI GCGC 4 cut(s) 581, 583, 704, 730
BstKTI GATC 3 cut(s) 446, 814, 865
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 443, 811, 862
BstMWI GCNNNNNNNGC 2 cut(s) 485, 494
BstNI CCWGG 2 cut(s) 725, 795
BstNSI RCATGY 2 cut(s) 164, 475
BstSCI CCNGG 2 cut(s) 723, 793
BstSFI CTRYAG 2 cut(s) 673, 907
BstUI CGCG 2 cut(s) 581, 730
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 443, 811
BstXI CCANNNNNNTGG 1 cut(s) 717
BstYI RGATCY 2 cut(s) 443, 811
BsuI GTATCC 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 1 cut(s) 624
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 3 cut(s) 670, 780, 874
BveI ACCTGC 2 cut(s) 80, 359
Cac8I GCNNGC 7 cut(s) 455, 477, 581, 634, 677, 681, 747
CfoI GCGC 4 cut(s) 581, 583, 704, 730
Cfr13I GGNCC 1 cut(s) 721
Csp6I GTAC 3 cut(s) 203, 589, 872
CviAII CATG 6 cut(s) 161, 190, 228, 472, 607, 661
CviQI GTAC 3 cut(s) 203, 589, 872
DdeI CTNAG 3 cut(s) 263, 409, 524
DpnI GATC 3 cut(s) 445, 813, 864
DpnII GATC 3 cut(s) 443, 811, 862
Eco130I CCWWGG 3 cut(s) 104, 257, 537
Eco47I GGWCC 1 cut(s) 721
Eco57I CTGAAG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 723, 793
EcoT14I CCWWGG 3 cut(s) 104, 257, 537
EcoT22I ATGCAT 1 cut(s) 115
ErhI CCWWGG 3 cut(s) 104, 257, 537
FaeI CATG 6 cut(s) 164, 193, 231, 475, 610, 664
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 2 cut(s) 579, 734
FatI CATG 6 cut(s) 160, 189, 227, 471, 606, 660
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 1 cut(s) 258
FspI TGCGCA 1 cut(s) 703
GlaI GCGC 4 cut(s) 580, 582, 703, 729
GluI GCNGC 1 cut(s) 622
GsaI CCCAGC 2 cut(s) 40, 86
HhaI GCGC 4 cut(s) 581, 583, 704, 730
Hin1II CATG 6 cut(s) 164, 193, 231, 475, 610, 664
Hin6I GCGC 4 cut(s) 579, 581, 702, 728
HinP1I GCGC 4 cut(s) 579, 581, 702, 728
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 2 cut(s) 433, 455
HinfI GANTC 4 cut(s) 253, 267, 778, 818
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 654, 872
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 4 cut(s) 166, 686, 815, 833
Hpy8I GTNNAC 2 cut(s) 654, 872
HpyAV CCTTC 3 cut(s) 163, 556, 705
HpyCH4III ACNGT 5 cut(s) 338, 385, 658, 775, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 494
HpyF3I CTNAG 3 cut(s) 263, 409, 524
Hsp92II CATG 6 cut(s) 164, 193, 231, 475, 610, 664
HspAI GCGC 4 cut(s) 579, 581, 702, 728
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 3 cut(s) 443, 811, 862
LmnI GCTCC 2 cut(s) 86, 316
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 5 cut(s) 37, 151, 398, 534, 633
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 379, 763, 775
MalI GATC 3 cut(s) 445, 813, 864
MboI GATC 3 cut(s) 443, 811, 862
MboII GAAGA 7 cut(s) 166, 189, 259, 492, 701, 821, 909
MflI RGATCY 2 cut(s) 443, 811
MluCI AATT 4 cut(s) 94, 315, 513, 713
MlyI GAGTC 3 cut(s) 261, 262, 772
MnlI CCTC 5 cut(s) 422, 519, 623, 638, 850
Mph1103I ATGCAT 1 cut(s) 115
MroXI GAANNNNTTC 3 cut(s) 113, 173, 496
MseI TTAA 3 cut(s) 302, 851, 931
MspR9I CCNGG 2 cut(s) 725, 795
Mva1269I GAATGC 2 cut(s) 113, 115
MvaI CCWGG 2 cut(s) 725, 795
MvnI CGCG 2 cut(s) 581, 730
MwoI GCNNNNNNNGC 2 cut(s) 485, 494
NdeII GATC 3 cut(s) 443, 811, 862
NlaIII CATG 6 cut(s) 164, 193, 231, 475, 610, 664
NlaIV GGNNCC 4 cut(s) 312, 445, 493, 722
NmuCI GTSAC 2 cut(s) 379, 775
NsbI TGCGCA 1 cut(s) 703
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 2 cut(s) 164, 475
PauI GCGCGC 1 cut(s) 579
PctI GAATGC 2 cut(s) 113, 115
PdmI GAANNNNTTC 3 cut(s) 113, 173, 496
PfeI GAWTC 1 cut(s) 818
PflFI GACNNNGTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 3 cut(s) 261, 261, 772
PpsI GAGTC 3 cut(s) 261, 261, 772
PpuMI RGGWCCY 1 cut(s) 721
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 723, 793
PspFI CCCAGC 2 cut(s) 36, 82
PspGI CCWGG 2 cut(s) 723, 793
PspN4I GGNNCC 4 cut(s) 312, 445, 493, 722
PspPI GGNCC 1 cut(s) 721
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 2 cut(s) 677, 911
PsuI RGATCY 2 cut(s) 443, 811
PsyI GACNNNGTC 1 cut(s) 781
PteI GCGCGC 1 cut(s) 579
RsaI GTAC 3 cut(s) 204, 590, 873
RsaNI GTAC 3 cut(s) 203, 589, 872
SaqAI TTAA 3 cut(s) 302, 851, 931
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 3 cut(s) 443, 811, 862
Sau96I GGNCC 1 cut(s) 721
SchI GAGTC 3 cut(s) 261, 262, 772
ScrFI CCNGG 2 cut(s) 725, 795
SfaNI GCATC 5 cut(s) 37, 151, 398, 534, 633
SfcI CTRYAG 2 cut(s) 673, 907
SinI GGWCC 1 cut(s) 721
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 4 cut(s) 94, 315, 513, 713
SsiI CCGC 2 cut(s) 123, 495
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 723, 793
StyI CCWWGG 3 cut(s) 104, 257, 537
TaaI ACNGT 5 cut(s) 338, 385, 658, 775, 869
TaqI TCGA 4 cut(s) 165, 785, 816, 832
TasI AATT 4 cut(s) 94, 315, 513, 713
TatI WGTACW 2 cut(s) 588, 871
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 3 cut(s) 302, 851, 931
Tru9I TTAA 3 cut(s) 302, 851, 931
TscAI CASTG 3 cut(s) 677, 780, 874
TseFI GTSAC 2 cut(s) 379, 775
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 2 cut(s) 379, 775
TspDTI ATGAA 3 cut(s) 62, 106, 583
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 3 cut(s) 677, 780, 874
Tth111I GACNNNGTC 1 cut(s) 781
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 1 cut(s) 713
XceI RCATGY 2 cut(s) 164, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XmaJI CCTAGG 1 cut(s) 257
XmnI GAANNNNTTC 3 cut(s) 113, 173, 496
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.