Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006003

Physical Location & Seq

Genomic Coordinates Reverse (-)

2810374 .. 2812403

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAGCACCAGCAACCTTCTTTATACCCTGCTACTGGGGTTCAGTCTGCTGGACAACAATATATGCCTTCCACTGATGGAACTTCGACTGTTGCATCACAATCGTCAGCTGGGGAAGCAAAGTCTACTGGAAGAAGAGAACTTCCTGCGGATGTTTTTGCAATGAACTATTCATCTTTTCTGGCACCAGTTCCTGGATGGCAAACTGGTCCTCCTCGTGGTATGGGGTTTCCTATGCCATATAACACTGCGGTGCCAATGCCCAGTTTTAAGCAGTCTTCAAAGTCAGCAAACCCATTTGATGTAAACAGTGAACCTCCAATACAAGCCTCAGCGTTTCCTTCCTTGCAAGCTCCCCTACCAAATGCCCAGCCTTTATCCCCTTCAGGTTTAATGCGCACGTCCAGCCTTGGTACTCCCTCATCAGCATGGATGCCCCTCCAGTCATCACCATATTCATCAGCGGTTCCTCCCCAAGCACCACAATATGCATCCCAAGTGCCTCCCCAAGCACCACAATATGCATCACAAATGCCTTCCCAAGCACCGCCGTATGCATCACAAGTGCCTCCCCAGCCACCACAATATGCATCACAAATTGCCACCAAGGGCCTACATGGTACAACAAGTTCCGAGCAGCGTGCCACCTTCCGGGTATCAAGGGGCAGGCGGCTTTGGCACCGGTGGGGCTTCTTTTGGTTCGTTAAATGTGGATCAGCAGCTGGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArfGap

Protein Analysis

244

Amino Acids

25.97

Weight (kDa)

10.0

Isoelectric Point (pI)

91.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13350 AT4G13350
fragaria_vesca	FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240
malus_domestica	MD02G1063100.v1.1 MD15G1188600.v1.1
prunus_persica	Prupe.7G227900_v2.0.a1
pyrus_communis	pycom02g04270 pycom15g16910
rosa_chinensis	RchiOBHm_Chr2g0090971
rosa_laevigata	RLG00000016162
rosa_multiflora	Rmu_sc0000792.1_g000020 Rmu_ssc0000320.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150720
rosa_rugosa	Rorug02G0011400 Rorug02G0011400 Rorug02G0011400
rosa_samantha	Rh2AG057600 Rh2BG055800 Rh2CG058100 Rh2DG057100
rosa_wichuraiana	Rw2G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	717
AccB1I	GGYRCC	3 cut(s)	184, 253, 678
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	5 cut(s)	149, 251, 464, 548, 670
AclWI	GGATC	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	415, 622
AfiI	CCNNNNNNNGG	4 cut(s)	35, 194, 218, 651
AgeI	ACCGGT	1 cut(s)	681
AgsI	TTSAA	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	193
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	110, 353, 722
AluI	AGCT	3 cut(s)	110, 353, 722
AlwI	GGATC	1 cut(s)	721
AlwNI	CAGNNNCTG	2 cut(s)	194, 722
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	4, 637, 719
AsiGI	ACCGGT	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	209, 610
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	3 cut(s)	184, 253, 678
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	16, 649
BccI	CCATC	2 cut(s)	71, 192
BceAI	ACGGC	1 cut(s)	535
BcgI	CGANNNNNNTGC	4 cut(s)	84, 118, 623, 657
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	717
BisI	GCNGC	4 cut(s)	5, 638, 671, 720
BlsI	GCNGC	4 cut(s)	6, 639, 672, 721
Bme1390I	CCNGG	2 cut(s)	195, 653
Bme18I	GGWCC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	209, 610
BmiI	GGNNCC	4 cut(s)	186, 255, 468, 680
BmrFI	CCNGG	2 cut(s)	195, 653
BmrI	ACTGGG	2 cut(s)	45, 258
BmsI	GCATC	6 cut(s)	104, 423, 500, 533, 566, 599
BmuI	ACTGGG	2 cut(s)	45, 258
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	409, 606
BsaWI	WCCGGW	1 cut(s)	681
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 194, 218, 651
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	6 cut(s)	40, 133, 188, 211, 264, 442
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	409, 606
BseGI	GGATG	4 cut(s)	157, 203, 438, 491
BseLI	CCNNNNNNNGG	4 cut(s)	35, 194, 218, 651
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	6 cut(s)	40, 133, 188, 211, 264, 442
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	16, 649
BseYI	CCCAGC	3 cut(s)	110, 369, 573
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	3 cut(s)	184, 253, 678
BshTI	ACCGGT	1 cut(s)	681
BsiSI	CCGG	2 cut(s)	652, 682
BslI	CCNNNNNNNGG	4 cut(s)	35, 194, 218, 651
BsnI	GGCC	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	713
BspACI	CCGC	5 cut(s)	149, 251, 464, 548, 670
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	4 cut(s)	186, 255, 468, 680
BspMI	ACCTGC	1 cut(s)	717
BspPI	GGATC	1 cut(s)	721
BspT107I	GGYRCC	3 cut(s)	184, 253, 678
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	6 cut(s)	40, 133, 188, 211, 264, 442
BssAI	RCCGGY	1 cut(s)	681
BssECI	CCNNGG	2 cut(s)	409, 606
BssMI	GATC	1 cut(s)	713
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	409, 606
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	91, 311
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	351, 642, 668, 724
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	4 cut(s)	157, 203, 438, 491
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	1 cut(s)	716
BstMBI	GATC	1 cut(s)	713
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 116, 405, 574, 676
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	193, 651
BstV1I	GCAGC	2 cut(s)	16, 649
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	402
BtsCI	GGATG	4 cut(s)	157, 203, 438, 491
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	72, 246, 316
BveI	ACCTGC	1 cut(s)	717
Cac8I	GCNNGC	4 cut(s)	351, 642, 668, 724
CaiI	CAGNNNCTG	2 cut(s)	194, 722
CfoI	GCGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	209, 610
Csp6I	GTAC	2 cut(s)	414, 621
CspAI	ACCGGT	1 cut(s)	681
CviAII	CATG	2 cut(s)	429, 617
CviQI	GTAC	2 cut(s)	414, 621
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	1 cut(s)	715
DpnII	GATC	1 cut(s)	713
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	409, 606
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	409, 606
EcoT22I	ATGCAT	4 cut(s)	493, 526, 559, 592
ErhI	CCWWGG	2 cut(s)	409, 606
FaeI	CATG	2 cut(s)	432, 620
FatI	CATG	2 cut(s)	428, 616
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	4 cut(s)	5, 638, 671, 720
FokI	GGATG	4 cut(s)	164, 210, 445, 478
Fsp4HI	GCNGC	4 cut(s)	5, 638, 671, 720
FspAI	RTGCGCAY	1 cut(s)	398
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	4 cut(s)	5, 638, 671, 720
GsaI	CCCAGC	3 cut(s)	114, 373, 577
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	2 cut(s)	652, 682
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	432, 620
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	652, 682
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	126, 307, 314
Hpy188I	TCNGA	1 cut(s)	634
Hpy8I	GTNNAC	3 cut(s)	126, 307, 314
HpyAV	CCTTC	6 cut(s)	27, 78, 351, 393, 546, 658
HpyCH4III	ACNGT	2 cut(s)	91, 311
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	8 cut(s)	4, 95, 161, 349, 491, 524, 557, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 116, 405, 574, 676
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	432, 620
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	713
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	2 cut(s)	16, 649
LweI	GCATC	6 cut(s)	104, 423, 500, 533, 566, 599
MaeII	ACGT	1 cut(s)	401
MalI	GATC	1 cut(s)	715
MboI	GATC	1 cut(s)	713
MboII	GAAGA	3 cut(s)	144, 147, 270
MluCI	AATT	1 cut(s)	597
MnlI	CCTC	9 cut(s)	222, 225, 327, 340, 430, 449, 480, 513, 579
Mph1103I	ATGCAT	4 cut(s)	493, 526, 559, 592
MseI	TTAA	3 cut(s)	270, 392, 705
MslI	CAYNNNNRTG	2 cut(s)	251, 427
MspA1I	CMGCKG	3 cut(s)	110, 464, 722
MspI	CCGG	2 cut(s)	652, 682
MspR9I	CCNGG	2 cut(s)	195, 653
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	10, 116, 405, 574, 676
NciI	CCSGG	1 cut(s)	653
NdeII	GATC	1 cut(s)	713
NlaIII	CATG	2 cut(s)	432, 620
NlaIV	GGNNCC	4 cut(s)	186, 255, 468, 680
NsbI	TGCGCA	1 cut(s)	398
NsiI	ATGCAT	4 cut(s)	493, 526, 559, 592
OliI	CACNNNNGTG	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	681
PkrI	GCNGC	4 cut(s)	6, 639, 672, 721
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	3 cut(s)	110, 369, 573
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	186, 255, 468, 680
PspPI	GGNCC	2 cut(s)	209, 610
PsrI	GAACNNNNNNTAC	4 cut(s)	306, 338, 613, 645
PstNI	CAGNNNCTG	2 cut(s)	194, 722
PvuII	CAGCTG	2 cut(s)	110, 722
RsaI	GTAC	2 cut(s)	415, 622
RsaNI	GTAC	2 cut(s)	414, 621
RseI	CAYNNNNRTG	2 cut(s)	251, 427
SaqAI	TTAA	3 cut(s)	270, 392, 705
SatI	GCNGC	4 cut(s)	5, 638, 671, 720
Sau3AI	GATC	1 cut(s)	713
Sau96I	GGNCC	2 cut(s)	209, 610
ScrFI	CCNGG	2 cut(s)	195, 653
SetI	ASST	9 cut(s)	19, 112, 319, 355, 391, 404, 650, 724, 731
SfaNI	GCATC	6 cut(s)	104, 423, 500, 533, 566, 599
SgrAI	CRCCGGYG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	251, 427
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	5 cut(s)	149, 251, 464, 548, 670
StyD4I	CCNGG	2 cut(s)	193, 651
StyI	CCWWGG	2 cut(s)	409, 606
TaaI	ACNGT	2 cut(s)	91, 311
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	597
TauI	GCSGC	1 cut(s)	673
Tru1I	TTAA	3 cut(s)	270, 392, 705
Tru9I	TTAA	3 cut(s)	270, 392, 705
TscAI	CASTG	3 cut(s)	79, 253, 316
TseI	GCWGC	3 cut(s)	4, 637, 719
TspDTI	ATGAA	3 cut(s)	162, 179, 447
TspRI	CASTG	3 cut(s)	79, 253, 316
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	125
Zsp2I	ATGCAT	4 cut(s)	493, 526, 559, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.