Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006003

Physical Location & Seq

Genomic Coordinates Forward (+)

88076575 .. 88083278

Gene Structure 6704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGCATGCATGCATGCATCTTTTCAGTGCTTACGCATGTTTGATATTGTCTTTTCCATTGATAATCTTCTCATTTTCTCACATTGTGCTCGTCTCTGTTTCCCAATTACAGCGTGCAAAGGAACTTTATCAAAAAGAATTAGATCCACAACGTAATTCCTTCCCTGATAGCAGTAATGTTGAGAGACTTAGAGACTTTATTAAGCATGTGTACGTGGATAGAAGATATACTGGTGAAAGAAACTTGGACAAGCCTCCGAGGGTGAAAATGGGTGACAAGGAGGACTCTTATGAAAATAGAAGGCTAGATTCATATCAGGGTTCTCGAAGCCCACCATATGATGATGAACGTCGTTATAGTGGAAGGTCCAGTCCTGGCGGTAGAAGTTATGAGGAGCAAAGAAGTCCCGGATATGATCTAGAAAGTCGACAGTATGGTGATTCTAGGAGAAGTCCTTCTCGCCCTGAAATTGTCAATGATTGGCGTCGAGAAGATAGATTTGGAAATGGTAGGAGATATGATGATCGTAGAGTATCCGATGGAGATTCTAAACTGGACGCAAAATCTCCTGAACGACCAAGAGATATAGATTCGTCCAGTCCCCCTATGGTACGACCTGTTAGAGATATTTTGGGGGATAAGACAATACCTCTCCGTATTATTGAACCTCCTAAAGCCAACAATGTTAGGCCTACTGAAGGTTCTGTGCATACACAGAGAACTGCTTCTTCCAGTAGCTTGGGTTCCACCAATGGGAACCCAGTTGAAGTGAAAGTGGAGACTTCTGGAAGTTTAATTGACTTTGATGCCGATATTGAACCTGCTCCAACTCCAGCAGTTTCTCAAGCACAACAAACTTCTGTAACTCAATCATATTCACAGCCAGAAAATTCACACAGTGACAACAACTGGGCCTCTTTTGATGTTGCTCCACAAGTGAAAGTATCTCAAGCTCCTGCAAATGCAAATTCTTTGGAATCTCTGCTATCAGAATTGTCTGTTTCAGCACCTGTCCCTAGTTATTCTGGAACTGCAGATAATACCGGGGCTTTTACAGCTGCAGGTAACATGACTGCACCATTCAGTGGTAATTCAGTCATCACTCCTGTAGGACACACAATGTTGCCCACTACTTCTCATACAGTTGCATCGACTACAAGCTTGTCAACATTTCCCCCTGTTGGTGCTCCAGTTGCAACCCCTGGATTGGCTCAAACATTCCCTGCCAATGCTAGCAATTTCCCTGCTACCGGTTCCGGGCAATGGCCTAGTATGCAGCATCAGCAACCTTCTTTATTCCCTGCTAATGGTATTCAGTCTGCCTCTCAACAGTATATACCATCAGTTGGTGGACCTTCAAGCAATCAACCATGGAATTTAGCACATGCCCCAAATGCACAAGGTCAACCTAGCTATCCAGCTGCACAAGCACCACAAGATGTTTCAAGATCTACCCACAATGTTAGTACTGTTGCATCACAAAATTCGGCTGGGGATGTAAAATCAATTGGAAGAAGTGCACTTCCTGAGGATCTTTTTGCTATGAACTATTCATCCTTCCCTGCACCAGTTCCTGGATGGCAAACTGGTCCTCCTCAGGGTATGGGGTTTGCTATGCCATACAACACTGCAATGCCCATACCCAGTTTTCAGCAGTCGAAGTCAGCAAACCCGTTTGATGTCAATAGTGGACCTCCTCCAGTTCAAGCCTCAGCATTTCCTTCCATGGCATCCTCACAAGGACCACTACCAAATATGCAGCCTCCATCTGGCTTATTGCGTACAGCTAGCCTTGGGACACCATCATCAGCTTGGGGGCCCTCATATTCATCTGGATTGCCTCTTCAAGCACCACCACCATATGCATCACAAATGCCTCCAAGTGCCTATGGGGGGCAACAAATTCCGAGTAGCTTGCCACCTTCAGGGTATCAAGGAGCAGGAGGCTTTGGTGCTGAGGGAGCTGCTTTTGGTTCATTAAATATGGATCAACAGCTGCTCTTGATTAAAGCTTTGCTTTCGTTACCTGATCAACAATTCAACGCACAAATCCCTTTGTACTGGGAAATGGGGGAAATTCCCTCTACCATACAATATGATGGATGGGGTTCTGCTTGGGTTCCCTATATCCATTATTCCTGCTATGGCTTGTTCTTGTCCCAGGTAATTCACGGGCACGAACATTATGATGGAATTGTGCTTGGCGTCTGTACAATGGAGAATGATTCTTGGCGACAGATTGACTCCACAATATTATGTAAACCTCTAAGTGATGATGGGATCGTGGTGAACGGTGCTGTTCATTGGTTGGTGAGTAAGGTTGCAGATGCAACATTGGTGATTATGTCTTTCCTTTTAGCAGAGGAGGAGGTTAGGGAAATTCCACTACCGCCCATTCCCAGTACTCTTTCAAGTCGACTAGGGGTATTCAGAAATTGGCTATGTATAACATTAGTATCAGAATGGAATGCAGGAGAAACATTTAATGAGTTTTGGGTCATGAAGGAATATGGAGTGAGGGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArfGap

Protein Analysis

842

Amino Acids

91.24

Weight (kDa)

5.4

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13350 AT4G13350
fragaria_vesca	FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240
malus_domestica	MD02G1063100.v1.1 MD15G1188600.v1.1
prunus_persica	Prupe.7G227900_v2.0.a1
pyrus_communis	pycom02g04270 pycom15g16910
rosa_chinensis	RchiOBHm_Chr2g0090971
rosa_laevigata	RLG00000016162
rosa_multiflora	Rmu_sc0000792.1_g000020 Rmu_ssc0000320.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150720
rosa_rugosa	Rorug02G0011400 Rorug02G0011400 Rorug02G0011400
rosa_samantha	Rh2AG057600 Rh2BG055800 Rh2CG058100 Rh2DG057100
rosa_wichuraiana	Rw2G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	829, 1052
AccB7I	CCANNNNNTGG	3 cut(s)	1085, 1346, 1574
AccI	GTMKAC	2 cut(s)	427, 2416
AciI	CCGC	2 cut(s)	378, 2390
AclWI	GGATC	4 cut(s)	137, 1539, 1995, 2288
AcsI	RAATTY	7 cut(s)	889, 967, 1375, 1483, 1902, 2076, 2379
AcuI	CTGAAG	2 cut(s)	717, 1908
AcyI	GRCGYC	2 cut(s)	484, 2205
AdeI	CACNNNGTG	2 cut(s)	85, 899
AfaI	GTAC	7 cut(s)	212, 612, 1468, 1783, 2060, 2212, 2404
AgeI	ACCGGT	1 cut(s)	1250
AgsI	TTSAA	9 cut(s)	665, 767, 818, 1359, 1446, 1706, 1847, 2041, 2412
AjnI	CCWGG	4 cut(s)	373, 1201, 1573, 2160
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AloI	GAACNNNNNNTCC	2 cut(s)	1538, 1570
Alw21I	GWGCWC	3 cut(s)	90, 1189, 1522
Alw26I	GTCTC	4 cut(s)	97, 178, 186, 773
Alw44I	GTGCAC	1 cut(s)	1518
AlwI	GGATC	4 cut(s)	137, 1539, 1995, 2288
AlwNI	CAGNNNCTG	2 cut(s)	1010, 1574
AoxI	GGCC	4 cut(s)	689, 912, 1265, 1817
ApaI	GGGCCC	1 cut(s)	1821
ApaLI	GTGCAC	1 cut(s)	1518
ApeKI	GCWGC	6 cut(s)	1058, 1276, 1421, 1759, 1964, 1996
ApoI	RAATTY	7 cut(s)	889, 967, 1375, 1483, 1902, 2076, 2379
AsiGI	ACCGGT	1 cut(s)	1250
Asp700I	GAANNNNTTC	2 cut(s)	454, 724
AspS9I	GGNCC	8 cut(s)	366, 912, 1352, 1589, 1691, 1742, 1817, 1818
AsuC2I	CCSGG	3 cut(s)	408, 1045, 1258
AsuHPI	GGTGA	7 cut(s)	245, 274, 284, 449, 2299, 2323, 2350
AsuNHI	GCTAGC	2 cut(s)	1232, 1787
AvaII	GGWCC	5 cut(s)	366, 1352, 1589, 1691, 1742
AxyI	CCTNAGG	2 cut(s)	1527, 1596
BaeGI	GKGCMC	3 cut(s)	1522, 1821, 2178
BaeI	ACNNNNGTAYC	2 cut(s)	2439, 2472
BanII	GRGCYC	1 cut(s)	1821
Bbv12I	GWGCWC	3 cut(s)	90, 1189, 1522
BbvCI	CCTCAGC	2 cut(s)	1711, 1956
BbvI	GCAGC	6 cut(s)	1045, 1288, 1408, 1771, 1951, 1983
BccI	CCATC	9 cut(s)	533, 1348, 1572, 1774, 1810, 2093, 2097, 2183, 2270
BcgI	CGANNNNNNTGC	2 cut(s)	1897, 1931
BciT130I	CCWGG	4 cut(s)	375, 1203, 1575, 2162
BciVI	GTATCC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	2029
BcnI	CCSGG	3 cut(s)	408, 1045, 1258
BcoDI	GTCTC	4 cut(s)	97, 178, 186, 773
BfaI	CTAG	9 cut(s)	305, 419, 444, 1017, 1233, 1269, 1410, 1788, 2420
BfmI	CTRYAG	3 cut(s)	1032, 1059, 1107
BfuAI	ACCTGC	2 cut(s)	829, 1052
BfuI	GTATCC	1 cut(s)	544
BglII	AGATCT	1 cut(s)	1448
BisI	GCNGC	6 cut(s)	1059, 1277, 1422, 1760, 1965, 1997
BlsI	GCNGC	6 cut(s)	1060, 1278, 1423, 1761, 1966, 1998
BmcAI	AGTACT	2 cut(s)	1468, 2404
Bme1390I	CCNGG	7 cut(s)	375, 408, 1045, 1203, 1258, 1575, 2162
Bme18I	GGWCC	5 cut(s)	366, 1352, 1589, 1691, 1742
BmgT120I	GGNCC	8 cut(s)	366, 912, 1352, 1589, 1691, 1742, 1817, 1818
BmiI	GGNNCC	6 cut(s)	745, 758, 1255, 1818, 1819, 2121
BmrFI	CCNGG	7 cut(s)	375, 408, 1045, 1203, 1258, 1575, 2162
BmrI	ACTGGG	5 cut(s)	755, 919, 1638, 2071, 2394
BmsI	GCATC	8 cut(s)	25, 796, 1157, 1288, 1484, 1739, 1874, 2317
BmtI	GCTAGC	2 cut(s)	1236, 1791
BmuI	ACTGGG	5 cut(s)	755, 919, 1638, 2071, 2394
BpmI	CTGGAG	3 cut(s)	816, 1173, 1683
Bpu10I	CCTNAGC	2 cut(s)	1711, 1956
BpuEI	CTTGAG	2 cut(s)	828, 933
BpuMI	CCSGG	3 cut(s)	408, 1045, 1258
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	2 cut(s)	484, 2205
BsaJI	CCNNGG	7 cut(s)	257, 1044, 1201, 1370, 1725, 1792, 2160
BsaWI	WCCGGW	1 cut(s)	1250
BsaXI	ACNNNNNCTCC	2 cut(s)	1576, 1606
Bse118I	RCCGGY	1 cut(s)	1250
Bse21I	CCTNAGG	2 cut(s)	1527, 1596
Bse3DI	GCAATG	2 cut(s)	1268, 1638
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	4 cut(s)	375, 1203, 1575, 2162
BseDI	CCNNGG	7 cut(s)	257, 1044, 1201, 1370, 1725, 1792, 2160
BseGI	GGATG	5 cut(s)	1501, 1553, 1583, 1730, 2108
BseJI	GATNNNNATC	1 cut(s)	312
BseMI	GCAATG	2 cut(s)	1268, 1638
BseMII	CTCAG	4 cut(s)	1518, 1610, 1725, 1947
BseRI	GAGGAG	5 cut(s)	407, 1584, 1686, 2378, 2381
BseSI	GKGCMC	3 cut(s)	1522, 1821, 2178
BseXI	GCAGC	6 cut(s)	1045, 1288, 1408, 1771, 1951, 1983
BseYI	CCCAGC	1 cut(s)	1490
BsgI	GTGCAG	3 cut(s)	1059, 1407, 1548
BshFI	GGCC	4 cut(s)	691, 914, 1267, 1819
BshTI	ACCGGT	1 cut(s)	1250
BsiHKAI	GWGCWC	3 cut(s)	90, 1189, 1522
BsiSI	CCGG	4 cut(s)	408, 1044, 1251, 1257
BslFI	GGGAC	5 cut(s)	390, 585, 998, 1810, 2143
BsmAI	GTCTC	4 cut(s)	97, 178, 186, 773
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	5 cut(s)	390, 585, 998, 1810, 2143
BsmI	GAATGC	1 cut(s)	2473
BsnI	GGCC	4 cut(s)	691, 914, 1267, 1819
Bsp120I	GGGCCC	1 cut(s)	1817
Bsp1286I	GDGCHC	5 cut(s)	90, 1189, 1522, 1821, 2178
Bsp1407I	TGTACA	1 cut(s)	2210
Bsp143I	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
Bsp19I	CCATGG	2 cut(s)	1370, 1725
BspACI	CCGC	2 cut(s)	378, 2390
BspANI	GGCC	4 cut(s)	691, 914, 1267, 1819
BspCNI	CTCAG	4 cut(s)	1519, 1609, 1724, 1948
BspHI	TCATGA	1 cut(s)	2499
BspLI	GGNNCC	6 cut(s)	745, 758, 1255, 1818, 1819, 2121
BspMAI	CTGCAG	2 cut(s)	1036, 1063
BspMI	ACCTGC	2 cut(s)	829, 1052
BspOI	GCTAGC	2 cut(s)	1236, 1791
BspPI	GGATC	4 cut(s)	137, 1539, 1995, 2288
BsrDI	GCAATG	2 cut(s)	1268, 1638
BsrFI	RCCGGY	1 cut(s)	1250
BsrGI	TGTACA	1 cut(s)	2210
BssAI	RCCGGY	1 cut(s)	1250
BssECI	CCNNGG	7 cut(s)	257, 1044, 1201, 1370, 1725, 1792, 2160
BssMI	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
BssNI	GRCGYC	2 cut(s)	484, 2205
BssT1I	CCWWGG	3 cut(s)	1370, 1725, 1792
Bst2UI	CCWGG	4 cut(s)	375, 1203, 1575, 2162
Bst4CI	ACNGT	6 cut(s)	432, 899, 1144, 1332, 1471, 2294
Bst6I	CTCTTC	1 cut(s)	1848
BstACI	GRCGYC	2 cut(s)	484, 2205
BstAUI	TGTACA	1 cut(s)	2210
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	7 cut(s)	6, 10, 14, 114, 1234, 1789, 1916
BstDEI	CTNAG	6 cut(s)	188, 1527, 1596, 1711, 1956, 2267
BstDSI	CCRYGG	2 cut(s)	1370, 1725
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	5 cut(s)	1501, 1553, 1583, 1730, 2108
BstKTI	GATC	8 cut(s)	145, 418, 526, 1451, 1534, 1990, 2032, 2283
BstMAI	GTCTC	4 cut(s)	97, 178, 186, 773
BstMBI	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
BstMWI	GCNNNNNNNGC	7 cut(s)	1055, 1193, 1273, 1282, 1394, 1427, 1961
BstNI	CCWGG	4 cut(s)	375, 1203, 1575, 2162
BstNSI	RCATGY	6 cut(s)	8, 12, 16, 39, 209, 1388
BstSCI	CCNGG	7 cut(s)	373, 406, 1043, 1201, 1256, 1573, 2160
BstSFI	CTRYAG	3 cut(s)	1032, 1059, 1107
BstSLI	GKGCMC	3 cut(s)	1522, 1821, 2178
BstV1I	GCAGC	6 cut(s)	1045, 1288, 1408, 1771, 1951, 1983
BstX2I	RGATCY	3 cut(s)	142, 1448, 1531
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	3 cut(s)	142, 1448, 1531
Bsu36I	CCTNAGG	2 cut(s)	1527, 1596
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	691, 914, 1267, 1819
BtgI	CCRYGG	2 cut(s)	1370, 1725
BtsCI	GGATG	5 cut(s)	1501, 1553, 1583, 1730, 2108
BtsI	GCAGTG	1 cut(s)	1626
BtsIMutI	CAGTG	4 cut(s)	31, 904, 1090, 1626
BveI	ACCTGC	2 cut(s)	829, 1052
Cac8I	GCNNGC	7 cut(s)	6, 10, 14, 114, 1234, 1789, 1916
CaiI	CAGNNNCTG	2 cut(s)	1010, 1574
CciI	TCATGA	1 cut(s)	2499
Cfr10I	RCCGGY	1 cut(s)	1250
Cfr13I	GGNCC	8 cut(s)	366, 912, 1352, 1589, 1691, 1742, 1817, 1818
CseI	GACGC	3 cut(s)	473, 566, 2194
Csp6I	GTAC	7 cut(s)	211, 611, 1467, 1782, 2059, 2211, 2403
CspAI	ACCGGT	1 cut(s)	1250
CviQI	GTAC	7 cut(s)	211, 611, 1467, 1782, 2059, 2211, 2403
DdeI	CTNAG	6 cut(s)	188, 1527, 1596, 1711, 1956, 2267
DpnI	GATC	8 cut(s)	144, 417, 525, 1450, 1533, 1989, 2031, 2282
DpnII	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
DraIII	CACNNNGTG	2 cut(s)	85, 899
Eam1104I	CTCTTC	1 cut(s)	1848
EarI	CTCTTC	1 cut(s)	1848
Eco130I	CCWWGG	3 cut(s)	1370, 1725, 1792
Eco147I	AGGCCT	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	1821
Eco47I	GGWCC	5 cut(s)	366, 1352, 1589, 1691, 1742
Eco57I	CTGAAG	2 cut(s)	717, 1908
Eco81I	CCTNAGG	2 cut(s)	1527, 1596
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	2 cut(s)	1817, 1818
EcoRII	CCWGG	4 cut(s)	373, 1201, 1573, 2160
EcoT14I	CCWWGG	3 cut(s)	1370, 1725, 1792
EcoT22I	ATGCAT	5 cut(s)	6, 10, 14, 18, 1867
EcoT38I	GRGCYC	1 cut(s)	1821
ErhI	CCWWGG	3 cut(s)	1370, 1725, 1792
Esp3I	CGTCTC	1 cut(s)	97
FalI	AAGNNNNNCTT	2 cut(s)	2001, 2033
FaqI	GGGAC	5 cut(s)	390, 585, 998, 1810, 2143
FauNDI	CATATG	2 cut(s)	337, 1861
FbaI	TGATCA	1 cut(s)	2029
FblI	GTMKAC	2 cut(s)	427, 2416
Fnu4HI	GCNGC	6 cut(s)	1059, 1277, 1422, 1760, 1965, 1997
FokI	GGATG	5 cut(s)	1508, 1540, 1590, 1717, 2115
FriOI	GRGCYC	1 cut(s)	1821
Fsp4HI	GCNGC	6 cut(s)	1059, 1277, 1422, 1760, 1965, 1997
FspBI	CTAG	9 cut(s)	305, 419, 444, 1017, 1233, 1269, 1410, 1788, 2420
GluI	GCNGC	6 cut(s)	1059, 1277, 1422, 1760, 1965, 1997
GsaI	CCCAGC	1 cut(s)	1494
GsuI	CTGGAG	3 cut(s)	816, 1173, 1683
HaeIII	GGCC	4 cut(s)	691, 914, 1267, 1819
HapII	CCGG	4 cut(s)	408, 1044, 1251, 1257
HgaI	GACGC	3 cut(s)	473, 566, 2194
Hin1I	GRCGYC	2 cut(s)	484, 2205
HincII	GTYRAC	4 cut(s)	428, 1167, 1406, 2417
HindII	GTYRAC	4 cut(s)	428, 1167, 1406, 2417
HindIII	AAGCTT	2 cut(s)	1159, 2010
HinfI	GANTC	9 cut(s)	284, 308, 440, 545, 590, 977, 2225, 2243, 2522
HpaII	CCGG	4 cut(s)	408, 1044, 1251, 1257
HphI	GGTGA	7 cut(s)	245, 274, 284, 449, 2299, 2323, 2350
Hpy188I	TCNGA	6 cut(s)	258, 538, 991, 1908, 2432, 2461
Hpy99I	CGWCG	2 cut(s)	354, 489
HpyCH4III	ACNGT	6 cut(s)	432, 899, 1144, 1332, 1471, 2294
HpyCH4IV	ACGT	3 cut(s)	151, 213, 349
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1055, 1193, 1273, 1282, 1394, 1427, 1961
HpyF3I	CTNAG	6 cut(s)	188, 1527, 1596, 1711, 1956, 2267
HpySE526I	ACGT	3 cut(s)	151, 213, 349
Hsp92I	GRCGYC	2 cut(s)	484, 2205
Ksp22I	TGATCA	1 cut(s)	2029
Kzo9I	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
LmnI	GCTCC	7 cut(s)	394, 829, 934, 958, 1192, 1937, 1961
Lsp1109I	GCAGC	6 cut(s)	1045, 1288, 1408, 1771, 1951, 1983
LweI	GCATC	8 cut(s)	25, 796, 1157, 1288, 1484, 1739, 1874, 2317
MaeI	CTAG	9 cut(s)	305, 419, 444, 1017, 1233, 1269, 1410, 1788, 2420
MaeII	ACGT	3 cut(s)	151, 213, 349
MaeIII	GTNAC	5 cut(s)	272, 862, 899, 1064, 2022
MalI	GATC	8 cut(s)	144, 417, 525, 1450, 1533, 1989, 2031, 2282
MboI	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
MboII	GAAGA	6 cut(s)	58, 234, 503, 720, 1524, 1835
MfeI	CAATTG	1 cut(s)	1506
MflI	RGATCY	3 cut(s)	142, 1448, 1531
MhlI	GDGCHC	5 cut(s)	90, 1189, 1522, 1821, 2178
MlyI	GAGTC	2 cut(s)	278, 2237
MmeI	TCCRAC	1 cut(s)	851
Mph1103I	ATGCAT	5 cut(s)	6, 10, 14, 18, 1867
MroXI	GAANNNNTTC	2 cut(s)	454, 724
MseI	TTAA	5 cut(s)	201, 794, 1979, 2007, 2484
MslI	CAYNNNNRTG	2 cut(s)	1631, 2187
MspA1I	CMGCKG	3 cut(s)	1058, 1421, 1996
MspI	CCGG	4 cut(s)	408, 1044, 1251, 1257
MspR9I	CCNGG	7 cut(s)	375, 408, 1045, 1203, 1258, 1575, 2162
MunI	CAATTG	1 cut(s)	1506
Mva1269I	GAATGC	1 cut(s)	2473
MvaI	CCWGG	4 cut(s)	375, 1203, 1575, 2162
MwoI	GCNNNNNNNGC	7 cut(s)	1055, 1193, 1273, 1282, 1394, 1427, 1961
NciI	CCSGG	3 cut(s)	408, 1045, 1258
NcoI	CCATGG	2 cut(s)	1370, 1725
NdeI	CATATG	2 cut(s)	337, 1861
NdeII	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
NheI	GCTAGC	2 cut(s)	1232, 1787
NlaIV	GGNNCC	6 cut(s)	745, 758, 1255, 1818, 1819, 2121
NmuCI	GTSAC	2 cut(s)	272, 899
NsiI	ATGCAT	5 cut(s)	6, 10, 14, 18, 1867
NspI	RCATGY	6 cut(s)	8, 12, 16, 39, 209, 1388
PaeI	GCATGC	3 cut(s)	8, 12, 16
PagI	TCATGA	1 cut(s)	2499
PceI	AGGCCT	1 cut(s)	691
PctI	GAATGC	1 cut(s)	2473
PdmI	GAANNNNTTC	2 cut(s)	454, 724
PfeI	GAWTC	7 cut(s)	308, 440, 545, 590, 977, 2225, 2522
PflMI	CCANNNNNTGG	3 cut(s)	1085, 1346, 1574
PfoI	TCCNGGA	2 cut(s)	406, 1573
PinAI	ACCGGT	1 cut(s)	1250
PkrI	GCNGC	6 cut(s)	1060, 1278, 1423, 1761, 1966, 1998
PleI	GAGTC	2 cut(s)	278, 2237
PpsI	GAGTC	2 cut(s)	278, 2237
Ppu21I	YACGTR	1 cut(s)	214
Psp6I	CCWGG	4 cut(s)	373, 1201, 1573, 2160
PspFI	CCCAGC	1 cut(s)	1490
PspGI	CCWGG	4 cut(s)	373, 1201, 1573, 2160
PspN4I	GGNNCC	6 cut(s)	745, 758, 1255, 1818, 1819, 2121
PspOMI	GGGCCC	1 cut(s)	1817
PspPI	GGNCC	8 cut(s)	366, 912, 1352, 1589, 1691, 1742, 1817, 1818
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PstI	CTGCAG	2 cut(s)	1036, 1063
PstNI	CAGNNNCTG	2 cut(s)	1010, 1574
PsuI	RGATCY	3 cut(s)	142, 1448, 1531
PvuII	CAGCTG	3 cut(s)	1058, 1421, 1996
RsaI	GTAC	7 cut(s)	212, 612, 1468, 1783, 2060, 2212, 2404
RsaNI	GTAC	7 cut(s)	211, 611, 1467, 1782, 2059, 2211, 2403
RseI	CAYNNNNRTG	2 cut(s)	1631, 2187
SalI	GTCGAC	2 cut(s)	426, 2415
SaqAI	TTAA	5 cut(s)	201, 794, 1979, 2007, 2484
SatI	GCNGC	6 cut(s)	1059, 1277, 1422, 1760, 1965, 1997
Sau3AI	GATC	8 cut(s)	142, 415, 523, 1448, 1531, 1987, 2029, 2280
Sau96I	GGNCC	8 cut(s)	366, 912, 1352, 1589, 1691, 1742, 1817, 1818
ScaI	AGTACT	2 cut(s)	1468, 2404
SchI	GAGTC	2 cut(s)	278, 2237
ScrFI	CCNGG	7 cut(s)	375, 408, 1045, 1203, 1258, 1575, 2162
SduI	GDGCHC	5 cut(s)	90, 1189, 1522, 1821, 2178
SfaNI	GCATC	8 cut(s)	25, 796, 1157, 1288, 1484, 1739, 1874, 2317
SfcI	CTRYAG	3 cut(s)	1032, 1059, 1107
SinI	GGWCC	5 cut(s)	366, 1352, 1589, 1691, 1742
SmiMI	CAYNNNNRTG	2 cut(s)	1631, 2187
SmlI	CTYRAG	2 cut(s)	843, 948
SmoI	CTYRAG	2 cut(s)	843, 948
SphI	GCATGC	3 cut(s)	8, 12, 16
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	2 cut(s)	378, 2390
SspI	AATATT	1 cut(s)	2253
SspMI	CTAG	9 cut(s)	305, 419, 444, 1017, 1233, 1269, 1410, 1788, 2420
StuI	AGGCCT	1 cut(s)	691
StyD4I	CCNGG	7 cut(s)	373, 406, 1043, 1201, 1256, 1573, 2160
StyI	CCWWGG	3 cut(s)	1370, 1725, 1792
TaaI	ACNGT	6 cut(s)	432, 899, 1144, 1332, 1471, 2294
TaiI	ACGT	3 cut(s)	154, 216, 352
TaqI	TCGA	6 cut(s)	325, 427, 487, 1151, 1658, 2416
TatI	WGTACW	4 cut(s)	1466, 2058, 2210, 2402
TfiI	GAWTC	7 cut(s)	308, 440, 545, 590, 977, 2225, 2522
Tru1I	TTAA	5 cut(s)	201, 794, 1979, 2007, 2484
Tru9I	TTAA	5 cut(s)	201, 794, 1979, 2007, 2484
TscAI	CASTG	4 cut(s)	31, 904, 1090, 1633
TseFI	GTSAC	2 cut(s)	272, 899
TseI	GCWGC	6 cut(s)	1058, 1276, 1421, 1759, 1964, 1996
Tsp45I	GTSAC	2 cut(s)	272, 899
TspDTI	ATGAA	9 cut(s)	300, 306, 360, 1542, 1559, 1818, 1965, 2291, 2516
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	4 cut(s)	31, 904, 1090, 1633
Van91I	CCANNNNNTGG	3 cut(s)	1085, 1346, 1574
VneI	GTGCAC	1 cut(s)	1518
VpaK11BI	GGWCC	5 cut(s)	366, 1352, 1589, 1691, 1742
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	7 cut(s)	889, 967, 1375, 1483, 1902, 2076, 2379
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	6 cut(s)	8, 12, 16, 39, 209, 1388
XcmI	CCANNNNNNNNNTGG	3 cut(s)	604, 1575, 1809
XmiI	GTMKAC	2 cut(s)	427, 2416
XmnI	GAANNNNTTC	2 cut(s)	454, 724
XspI	CTAG	9 cut(s)	305, 419, 444, 1017, 1233, 1269, 1410, 1788, 2420
ZrmI	AGTACT	2 cut(s)	1468, 2404
Zsp2I	ATGCAT	5 cut(s)	6, 10, 14, 18, 1867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.