Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000320.1

Orthogroup ID

OG0006003

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2577

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000320.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 986 bp

tccatagatctccgcaacgacgtcgtttgctagaaccgcaccggagcttcttcgaggaagtcaaaatggcgagccgagtgaaggaggacgaaaaaaatgaacggattattcgaggccttcttaaacttcctgagaatcgcagatgcattaactgcaatagtctggggccgcagtatgtttgcacgaatttctggacatttgtttgcaccaactgcagtggaatacatcgggagttcacgcaccgagtaaaatctgtgtcaatggccaaatttacgtcgcaagaagttaaatcccttcaagaagggggaaaccagcgtgcaaaggaactttatcaaaaagaattagatccacaacgtaattccttccctgatagcagtaatgttgagagacttcgagactttattaagcatgtgtacgtggatagaagatatactggtgaaagaaactcggacaagcctccgagggtgaaaatgggtgacaaggaagactcttatgaaaatagaaggccagattcatatcagggttctcgaagcccaccatatgatgatgaacgtcgttatagtggaaggtccagccccggtggtagaagttatgaggagcaaagaagtcctggatatgatctagaaagtcgacagtatggtgattctaagagaagtccttctcgccctgaaattgtcaatgattggcgccgagaagatagatttggaaatggtaggagatatgatgatcgtagagtatccgatggagattctaaactggacgcaaaatctcctgaacgaccaagagatatagattcgtccagtccccctatggtacgacctgttagagatattttgggggataagacaatacctctccgtattattgaacctcccaaagccaacaatgttaggcctactgaaggttccgtgcttacacaggtgatgagtctccactttaaaactgcatactgcatatatctgctgattgtaacctgctttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArfGap

Protein Analysis

327

Amino Acids

38.27

Weight (kDa)

9.48

Isoelectric Point (pI)

75.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13350 AT4G13350
fragaria_vesca	FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240 FvH4_1g05240
malus_domestica	MD02G1063100.v1.1 MD15G1188600.v1.1
prunus_persica	Prupe.7G227900_v2.0.a1
pyrus_communis	pycom02g04270 pycom15g16910
rosa_chinensis	RchiOBHm_Chr2g0090971
rosa_laevigata	RLG00000016162
rosa_multiflora	Rmu_sc0000792.1_g000020 Rmu_ssc0000320.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150720
rosa_rugosa	Rorug02G0011400 Rorug02G0011400 Rorug02G0011400
rosa_samantha	Rh2AG057600 Rh2BG055800 Rh2CG058100 Rh2DG057100
rosa_wichuraiana	Rw2G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	3 cut(s)	13, 37, 169
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	186, 268
AcuI	CTGAAG	1 cut(s)	920
AcyI	GRCGYC	2 cut(s)	21, 687
AfaI	GTAC	2 cut(s)	415, 815
AfiI	CCNNNNNNNGG	2 cut(s)	81, 901
AgsI	TTSAA	2 cut(s)	298, 868
AjnI	CCWGG	1 cut(s)	609
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	3 cut(s)	381, 389, 934
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	5 cut(s)	114, 166, 263, 505, 892
ApoI	RAATTY	2 cut(s)	186, 268
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	166, 569
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	5 cut(s)	448, 477, 487, 652, 933
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	491
BccI	CCATC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	747
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	381, 389, 934
BfaI	CTAG	2 cut(s)	31, 622
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	982
BfuI	GTATCC	1 cut(s)	747
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	578, 611
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	166, 569
BmiI	GGNNCC	3 cut(s)	167, 688, 906
BmrFI	CCNGG	2 cut(s)	578, 611
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	2 cut(s)	21, 687
BsaJI	CCNNGG	2 cut(s)	460, 576
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 901
Bse1I	ACTGG	3 cut(s)	438, 761, 800
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	460, 576
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	81, 901
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	3 cut(s)	438, 761, 800
BseRI	GAGGAG	1 cut(s)	610
BshFI	GGCC	5 cut(s)	116, 168, 265, 507, 894
BshNI	GGYRCC	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	42, 578
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	81, 901
BsmAI	GTCTC	3 cut(s)	381, 389, 934
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	5 cut(s)	116, 168, 265, 507, 894
Bsp143I	GATC	4 cut(s)	7, 345, 618, 726
BspACI	CCGC	3 cut(s)	13, 37, 169
BspANI	GGCC	5 cut(s)	116, 168, 265, 507, 894
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	167, 688, 906
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	438, 761, 800
BssECI	CCNNGG	2 cut(s)	460, 576
BssMI	GATC	4 cut(s)	7, 345, 618, 726
BssNI	GRCGYC	2 cut(s)	21, 687
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	635
BstACI	GRCGYC	2 cut(s)	21, 687
BstAPI	GCANNNNNTGC	2 cut(s)	152, 212
BstBAI	YACGTR	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	72, 317
BstDEI	CTNAG	2 cut(s)	131, 647
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	4 cut(s)	10, 348, 621, 729
BstMAI	GTCTC	3 cut(s)	381, 389, 934
BstMBI	GATC	4 cut(s)	7, 345, 618, 726
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 152, 212
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	576, 609
BstSFI	CTRYAG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	2 cut(s)	7, 345
BstYI	RGATCY	2 cut(s)	7, 345
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	5 cut(s)	116, 168, 265, 507, 894
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	2 cut(s)	72, 317
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	166, 569
CseI	GACGC	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	414, 814
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	2 cut(s)	414, 814
DdeI	CTNAG	2 cut(s)	131, 647
DinI	GGCGCC	1 cut(s)	688
DpnI	GATC	4 cut(s)	9, 347, 620, 728
DpnII	GATC	4 cut(s)	7, 345, 618, 726
DraI	TTTAAA	1 cut(s)	939
EaeI	YGGCCR	1 cut(s)	263
Eco147I	AGGCCT	2 cut(s)	116, 894
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	148
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
FaeI	CATG	1 cut(s)	412
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	540
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	31, 622
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	5 cut(s)	116, 168, 265, 507, 894
HapII	CCGG	2 cut(s)	42, 578
HgaI	GACGC	1 cut(s)	769
HhaI	GCGC	1 cut(s)	689
Hin1I	GRCGYC	2 cut(s)	21, 687
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	7 cut(s)	135, 487, 511, 643, 748, 793, 927
HpaII	CCGG	2 cut(s)	42, 578
HphI	GGTGA	5 cut(s)	448, 477, 487, 652, 933
Hpy166II	GTNNAC	3 cut(s)	236, 414, 631
Hpy188I	TCNGA	3 cut(s)	450, 461, 741
Hpy188III	TCNNGA	8 cut(s)	130, 192, 229, 298, 394, 527, 622, 772
Hpy8I	GTNNAC	3 cut(s)	236, 414, 631
Hpy99I	CGWCG	4 cut(s)	23, 26, 279, 557
HpyAV	CCTTC	9 cut(s)	75, 127, 295, 304, 372, 497, 560, 668, 895
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4IV	ACGT	5 cut(s)	21, 274, 354, 416, 552
HpyCH4V	TGCA	8 cut(s)	146, 155, 182, 206, 215, 319, 946, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 152, 212
HpyF3I	CTNAG	2 cut(s)	131, 647
HpySE526I	ACGT	5 cut(s)	21, 274, 354, 416, 552
Hsp92I	GRCGYC	2 cut(s)	21, 687
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	687
KasI	GGCGCC	1 cut(s)	686
Kzo9I	GATC	4 cut(s)	7, 345, 618, 726
LmnI	GCTCC	2 cut(s)	44, 597
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	31, 622
MaeII	ACGT	5 cut(s)	21, 274, 354, 416, 552
MaeIII	GTNAC	2 cut(s)	475, 969
MalI	GATC	4 cut(s)	9, 347, 620, 728
MboI	GATC	4 cut(s)	7, 345, 618, 726
MboII	GAAGA	4 cut(s)	42, 437, 496, 706
MflI	RGATCY	2 cut(s)	7, 345
MlsI	TGGCCA	1 cut(s)	265
MluCI	AATT	5 cut(s)	186, 268, 340, 357, 671
MluNI	TGGCCA	1 cut(s)	265
Mly113I	GGCGCC	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	481, 936
MnlI	CCTC	8 cut(s)	48, 78, 106, 455, 467, 588, 863, 881
Mox20I	TGGCCA	1 cut(s)	265
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	265
MseI	TTAA	5 cut(s)	122, 149, 287, 404, 938
Msp20I	TGGCCA	1 cut(s)	265
MspI	CCGG	2 cut(s)	42, 578
MspR9I	CCNGG	2 cut(s)	578, 611
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	36, 152, 212
NarI	GGCGCC	1 cut(s)	687
NciI	CCSGG	1 cut(s)	578
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	4 cut(s)	7, 345, 618, 726
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	3 cut(s)	167, 688, 906
NmeAIII	GCCGAG	2 cut(s)	100, 715
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	412
PceI	AGGCCT	2 cut(s)	116, 894
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	5 cut(s)	135, 511, 643, 748, 793
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	2 cut(s)	481, 935
PluTI	GGCGCC	1 cut(s)	690
PpsI	GAGTC	2 cut(s)	481, 935
Ppu21I	YACGTR	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	167, 688, 906
PspPI	GGNCC	2 cut(s)	166, 569
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	7, 345
RsaI	GTAC	2 cut(s)	415, 815
RsaNI	GTAC	2 cut(s)	414, 814
SalI	GTCGAC	1 cut(s)	629
SaqAI	TTAA	5 cut(s)	122, 149, 287, 404, 938
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	7, 345, 618, 726
Sau96I	GGNCC	2 cut(s)	166, 569
SchI	GAGTC	2 cut(s)	481, 936
ScrFI	CCNGG	2 cut(s)	578, 611
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	213
SfoI	GGCGCC	1 cut(s)	688
SinI	GGWCC	1 cut(s)	569
Sse9I	AATT	5 cut(s)	186, 268, 340, 357, 671
SseBI	AGGCCT	2 cut(s)	116, 894
SsiI	CCGC	3 cut(s)	13, 37, 169
SspDI	GGCGCC	1 cut(s)	686
SspMI	CTAG	2 cut(s)	31, 622
StuI	AGGCCT	2 cut(s)	116, 894
StyD4I	CCNGG	2 cut(s)	576, 609
TaaI	ACNGT	1 cut(s)	635
TaiI	ACGT	5 cut(s)	24, 277, 357, 419, 555
TaqI	TCGA	5 cut(s)	53, 111, 393, 528, 630
TasI	AATT	5 cut(s)	186, 268, 340, 357, 671
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	5 cut(s)	135, 511, 643, 748, 793
Tru1I	TTAA	5 cut(s)	122, 149, 287, 404, 938
Tru9I	TTAA	5 cut(s)	122, 149, 287, 404, 938
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	113, 503, 509, 563
TspGWI	ACGGA	3 cut(s)	117, 847, 897
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	569
XagI	CCTNNNNNAGG	1 cut(s)	899
XapI	RAATTY	2 cut(s)	186, 268
XbaI	TCTAGA	1 cut(s)	621
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	807
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	31, 622
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.