Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007915

Physical Location & Seq

Genomic Coordinates Reverse (-)

5729059 .. 5733185

Gene Structure 4127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08190.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAAGACTTGGATTACCCTGCAAAGCTGGAAGGATCGAGCATCCGATCAACTTGAAACTACTTCTGCTGATGAAAACCTTGTTTTTAAAACATGGTATCCACCTCTAGAGAAAACGATATCTTGCCTTTCAAAGTTGTATCGCTGTTTAGAACCAGAAGTTTTTACTGGTTTAGCGCAGGAAGTAGTTGAAGTTTGTTCAGAATCTATCCAGAAAGCGGGCAAACTCATCACAAAGAGATCATCCCCAATGGACGGTCAGCTTTTCCTCTTAAAGCATCTTCTTATCTTAAGGGAGCAGATTGCGCCTTTCGATATTGAGTTTTCTGTCACACATAAGGAACTTGATTTCTCGCACTTGCTGGAGCATCTAAGACGAATTCTTAGAGGTCAAGCCTCTCTATCTGATTGGTCCAGGTCAACTTCACTAGCAAGAACACTATCTCCCCGAGTTTTAGAAAGTCAAATAGATGCCAAAAAGGAATTGGAGAAAAGCCTGAAAACCACTGGTGAGGAGTTCATTATGTCTGTGACGAAGCTAGTTGTGGATCCTATGCTTTCATTTATTACCAAGGTCACAGCTGTGAAAGGTAGTCAGAATCAAAAGGTAGAGTCGGTTATGTCCAAACCAATAAAAGATCAAGCTTTTGCAACCCCGGATAAGGTGGCCGAACTTGTTCAAAAGGTAGCTGCTGCAATTCAGCAAGAGTTGCCAATGGTAATGACGAAAATGAAGCTTTATTTGCAGAACCCGTCAACACGAACTATACTATTCAAAGCTATAAAGACAAATATTGTCGAAGCACATGTTCGTGTACAGACCCTGCTGAAGGACGAGTATTCAGCGGAAGAGGTACAAGGCATCATACACATGCCTTCCATACAAGAACTACATGCACAACTTGATAATCTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

306

Amino Acids

34.64

Weight (kDa)

7.71

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73430 AT1G73430
fragaria_vesca	FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540
malus_domestica	MD02G1104000.v1.1 MD15G1224400.v1.1
prunus_persica	Prupe.7G190900_v2.0.a1
pyrus_communis	pycom02g08190 pycom15g19960
rosa_chinensis	RchiOBHm_Chr2g0096121 RchiOBHm_Chr2g0096281
rosa_laevigata	RLG00000016627
rosa_multiflora	Rmu_sc0005996.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145730
rosa_rugosa	Rorug02G0057400
rosa_samantha	Rh2AG104200 Rh2BG106300 Rh2CG108200 Rh2DG106900 Rh2DG107000
rosa_wichuraiana	Rw2G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	218, 845
AclWI	GGATC	3 cut(s)	42, 542, 555
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	848
AfaI	GTAC	2 cut(s)	816, 855
AfiI	CCNNNNNNNGG	4 cut(s)	217, 254, 661, 829
AflII	CTTAAG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	5 cut(s)	56, 132, 191, 680, 775
AjnI	CCWGG	1 cut(s)	413
AleI	CACNNNNGTG	1 cut(s)	581
AloI	GAACNNNNNNTCC	2 cut(s)	427, 459
AluBI	AGCT	8 cut(s)	27, 262, 538, 581, 644, 689, 736, 779
AluI	AGCT	8 cut(s)	27, 262, 538, 581, 644, 689, 736, 779
AlwI	GGATC	3 cut(s)	42, 542, 555
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	689, 692
ApoI	RAATTY	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	2 cut(s)	178, 307
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	521
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	676, 679
BciT130I	CCWGG	1 cut(s)	415
BciVI	GTATCC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	656
BfaI	CTAG	3 cut(s)	107, 428, 539
BfrI	CTTAAG	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	2 cut(s)	690, 693
BlsI	GCNGC	2 cut(s)	691, 694
Bme1390I	CCNGG	2 cut(s)	415, 656
Bme18I	GGWCC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	415, 656
BmsI	GCATC	5 cut(s)	50, 286, 376, 460, 870
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	570, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 254, 661, 829
Bse1I	ACTGG	2 cut(s)	172, 511
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	570, 654
BseGI	GGATG	2 cut(s)	41, 242
BseLI	CCNNNNNNNGG	4 cut(s)	217, 254, 661, 829
BseNI	ACTGG	2 cut(s)	172, 511
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	676, 679
BshFI	GGCC	1 cut(s)	668
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	4 cut(s)	217, 254, 661, 829
BsnI	GGCC	1 cut(s)	668
BsoBI	CYCGRG	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	5 cut(s)	34, 46, 239, 547, 637
BspACI	CCGC	2 cut(s)	218, 845
BspANI	GGCC	1 cut(s)	668
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	3 cut(s)	42, 542, 555
BspTI	CTTAAG	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	172, 511
BssECI	CCNNGG	2 cut(s)	570, 654
BssMI	GATC	5 cut(s)	34, 46, 239, 547, 637
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	843
BstAFI	CTTAAG	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstAUI	TGTACA	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	371, 383
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	2 cut(s)	41, 242
BstHHI	GCGC	2 cut(s)	178, 307
BstKTI	GATC	5 cut(s)	37, 49, 242, 550, 640
BstMBI	GATC	5 cut(s)	34, 46, 239, 547, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 709, 742
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	3 cut(s)	809, 874, 896
BstSCI	CCNGG	2 cut(s)	413, 654
BstV1I	GCAGC	2 cut(s)	676, 679
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	668
BtsCI	GGATG	2 cut(s)	41, 242
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	823
CfoI	GCGC	2 cut(s)	178, 307
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	815, 854
CviAII	CATG	4 cut(s)	93, 806, 871, 893
CviQI	GTAC	2 cut(s)	815, 854
DdeI	CTNAG	2 cut(s)	371, 383
DpnI	GATC	5 cut(s)	36, 48, 241, 549, 639
DpnII	GATC	5 cut(s)	34, 46, 239, 547, 637
DraI	TTTAAA	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	4 cut(s)	96, 809, 874, 896
FatI	CATG	4 cut(s)	92, 805, 870, 892
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	690, 693
FokI	GGATG	2 cut(s)	28, 229
Fsp4HI	GCNGC	2 cut(s)	690, 693
FspBI	CTAG	3 cut(s)	107, 428, 539
GlaI	GCGC	2 cut(s)	177, 306
GluI	GCNGC	2 cut(s)	690, 693
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	1 cut(s)	656
HhaI	GCGC	2 cut(s)	178, 307
Hin1II	CATG	4 cut(s)	96, 809, 874, 896
Hin6I	GCGC	2 cut(s)	176, 305
HinP1I	GCGC	2 cut(s)	176, 305
HincII	GTYRAC	2 cut(s)	420, 756
HindII	GTYRAC	2 cut(s)	420, 756
HindIII	AAGCTT	2 cut(s)	642, 734
HinfI	GANTC	3 cut(s)	203, 598, 611
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	3 cut(s)	420, 756, 815
Hpy188I	TCNGA	4 cut(s)	46, 202, 406, 597
Hpy188III	TCNNGA	2 cut(s)	107, 211
Hpy8I	GTNNAC	3 cut(s)	420, 756, 815
HpyAV	CCTTC	3 cut(s)	25, 823, 885
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	22, 650, 695, 745, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 709, 742
HpyF3I	CTNAG	2 cut(s)	371, 383
Hsp92II	CATG	4 cut(s)	96, 809, 874, 896
HspAI	GCGC	2 cut(s)	176, 305
Kzo9I	GATC	5 cut(s)	34, 46, 239, 547, 637
LmnI	GCTCC	2 cut(s)	295, 364
Lsp1109I	GCAGC	2 cut(s)	676, 679
LweI	GCATC	5 cut(s)	50, 286, 376, 460, 870
MaeI	CTAG	3 cut(s)	107, 428, 539
MaeIII	GTNAC	3 cut(s)	328, 529, 574
MalI	GATC	5 cut(s)	36, 48, 241, 549, 639
MboI	GATC	5 cut(s)	34, 46, 239, 547, 637
MboII	GAAGA	3 cut(s)	16, 272, 860
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	3 cut(s)	378, 482, 696
MlyI	GAGTC	1 cut(s)	620
MnlI	CCTC	6 cut(s)	114, 278, 380, 406, 505, 844
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	3 cut(s)	87, 272, 290
MslI	CAYNNNNRTG	3 cut(s)	581, 810, 869
MspA1I	CMGCKG	2 cut(s)	581, 845
MspCI	CTTAAG	1 cut(s)	289
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	415, 656
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	304, 709, 742
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	5 cut(s)	34, 46, 239, 547, 637
NlaIII	CATG	4 cut(s)	96, 809, 874, 896
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	3 cut(s)	328, 529, 574
NspI	RCATGY	3 cut(s)	809, 874, 896
OliI	CACNNNNGTG	1 cut(s)	581
PciI	ACATGT	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	203, 598
PkrI	GCNGC	2 cut(s)	691, 694
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PscI	ACATGT	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	816, 855
RsaNI	GTAC	2 cut(s)	815, 854
RseI	CAYNNNNRTG	3 cut(s)	581, 810, 869
SaqAI	TTAA	3 cut(s)	87, 272, 290
SatI	GCNGC	2 cut(s)	690, 693
Sau3AI	GATC	5 cut(s)	34, 46, 239, 547, 637
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	415, 656
SfaNI	GCATC	5 cut(s)	50, 286, 376, 460, 870
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	3 cut(s)	581, 810, 869
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	3 cut(s)	378, 482, 696
SsiI	CCGC	2 cut(s)	218, 845
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	3 cut(s)	107, 428, 539
StyD4I	CCNGG	2 cut(s)	413, 654
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	3 cut(s)	37, 312, 798
TasI	AATT	3 cut(s)	378, 482, 696
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	2 cut(s)	203, 598
Tru1I	TTAA	3 cut(s)	87, 272, 290
Tru9I	TTAA	3 cut(s)	87, 272, 290
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	3 cut(s)	328, 529, 574
TseI	GCWGC	2 cut(s)	689, 692
Tsp45I	GTSAC	3 cut(s)	328, 529, 574
TspDTI	ATGAA	5 cut(s)	17, 87, 508, 549, 746
TspRI	CASTG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	1 cut(s)	378
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	3 cut(s)	809, 874, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	3 cut(s)	107, 428, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.