Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007915

Physical Location & Seq

Genomic Coordinates Reverse (-)

8683450 .. 8725014

Gene Structure 41565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCGAGTAAGCCCGGCGTTCAGAGATCCGGAGCTATTTCCAAGGGCTACAACTTCGCATCTCACTGGGAACAGAACGCGCCGTTAACGGAGCAGCAACAAGCGGCGATTGCAAACCTCTCTCACGCCGTCGCAGAGCGACCGTTGCCGCCCAATTTGGCACAAGATCGAATGTCGGAGCAGCAGAATGGCCTGTCAGTCTCCACCAAGGGCAGCTCTTTTGGCTTGGAACACTCTGCTGCTATGGAAGCCATTCTTGTCAATACGAATCAGTTCTATAAATGGTTTACGGATCTTGAATCGGCCTTGAAGTCCGAGACAGAGGAGAAGTATCGCCACTATGTAGACACATTGATGGAGCGCATACAGATATGTGATGGTATCCTTCAGCAGGTGGATGATACTCTAGACTTGTTTAATGAACTACAACTGCAGCACCAGGCAGTAGTAACAAAGACTAAAACTCTTCATGATGCGTGCGACCGACTGTTGATAGAAAAGCAACGACTGATTGAATTTTCAGAAGCACTCCGCAGTAAGCTCAACTACTTTGATGAATTGGAGAATATTGCTACAAATTTTTATTCTCCAAACATGAATGTTCTAAATGAGAACTTTCTCCCTCTGCTCAAACGACTTGATGATTGCATATCGTATGTTGAAAGCAATCCGCAATATGCCGAATCCAGTGTTTACCTACTCAAATTTCGCCAACTGCAGTCTCGAGCCTTGGGCATGATTCGTTCACATGTACTTGCAATTCTTAAAGGTGCTTCTTCTCAGGTACAGGCAGCTATCGGAAGCAGTGGTGGCAGCAAAGCTTCTGTTTCTGAGGGTGTAGAAGCATCTGTTATATATGTCCGTTTCAAGGCAGCAGCAAGTGAGCTTAAACCAGTGCTGGAGGAAATTGAAAGCAGAGCATCAAGGAAAGAATATACTCAGATCCTTGCAGAATGTCACAAGCTATACTGCGAACAACCCCTTTCCTTGGTAAGAGGTATAGTACATCAAAGAATATCTGAATTCGCCAAGAAAGAGGCATTGCCATCATTGACTAGATCTGGATGTGCATATCTAATGCAGGTCTGTCAGCTTGAGCACCAACTTTTTGACCACTTTTTCCCATCTTCCGCAGAGGACTTTTCAAGTTTGGCTCCATTGATAGATCCTCTGTGGGTCTCCAATCCTTTTTCACTTTTCGTTCTCTTGTCTATTGTTTTGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

409

Amino Acids

45.89

Weight (kDa)

5.63

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG3_N	PF04136	114 - 256	2.1e-43	Conserved oligomeric Golgi complex subunit 3, N-terminal
COG3_C	PF20671	283 - 391	2e-26	Conserved oligomeric Golgi complex subunit 3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73430 AT1G73430
fragaria_vesca	FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540
malus_domestica	MD02G1104000.v1.1 MD15G1224400.v1.1
prunus_persica	Prupe.7G190900_v2.0.a1
pyrus_communis	pycom02g08190 pycom15g19960
rosa_chinensis	RchiOBHm_Chr2g0096121 RchiOBHm_Chr2g0096281
rosa_laevigata	RLG00000016627
rosa_multiflora	Rmu_sc0005996.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145730
rosa_rugosa	Rorug02G0057400
rosa_samantha	Rh2AG104200 Rh2BG106300 Rh2CG108200 Rh2DG106900 Rh2DG107000
rosa_wichuraiana	Rw2G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	382
Acc36I	ACCTGC	2 cut(s)	382, 1072
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	5 cut(s)	104, 149, 532, 671, 1131
AclWI	GGATC	4 cut(s)	21, 300, 937, 1160
AcsI	RAATTY	4 cut(s)	515, 577, 704, 1022
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	753, 786, 1005
AfiI	CCNNNNNNNGG	3 cut(s)	391, 868, 988
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	7 cut(s)	299, 310, 515, 662, 868, 911, 1146
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	8 cut(s)	35, 216, 541, 794, 821, 886, 964, 1093
AluI	AGCT	8 cut(s)	35, 216, 541, 794, 821, 886, 964, 1093
Alw21I	GWGCWC	1 cut(s)	1101
Alw26I	GTCTC	4 cut(s)	205, 311, 726, 1183
AlwI	GGATC	4 cut(s)	21, 300, 937, 1160
Ama87I	CYCGRG	1 cut(s)	723
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	2 cut(s)	190, 303
ApeKI	GCWGC	9 cut(s)	94, 181, 213, 239, 433, 791, 813, 872, 875
ApoI	RAATTY	4 cut(s)	515, 577, 704, 1022
Asp700I	GAANNNNTTC	2 cut(s)	252, 272
AspLEI	GCGC	2 cut(s)	82, 363
AsuC2I	CCSGG	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	9 cut(s)	106, 193, 225, 226, 445, 803, 825, 884, 887
BccI	CCATC	4 cut(s)	349, 371, 1054, 1132
BceAI	ACGGC	2 cut(s)	67, 113
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	4 cut(s)	205, 311, 726, 1183
BfaI	CTAG	2 cut(s)	407, 1056
BfmI	CTRYAG	2 cut(s)	431, 716
BfuAI	ACCTGC	2 cut(s)	382, 1072
BfuI	GTATCC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	1058
Bme1390I	CCNGG	2 cut(s)	15, 440
BmeT110I	CYCGRG	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	1155
BmrFI	CCNGG	2 cut(s)	15, 440
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	4 cut(s)	68, 463, 854, 929
BmuI	ACTGGG	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	1115
BpuMI	CCSGG	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	1183
BsaJI	CCNNGG	4 cut(s)	42, 207, 729, 987
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 868, 988
Bse1I	ACTGG	3 cut(s)	71, 687, 893
Bse3DI	GCAATG	1 cut(s)	1040
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	4 cut(s)	42, 207, 729, 987
BseGI	GGATG	2 cut(s)	403, 1070
BseLI	CCNNNNNNNGG	3 cut(s)	391, 868, 988
BseMI	GCAATG	1 cut(s)	1040
BseMII	CTCAG	3 cut(s)	794, 822, 953
BseNI	ACTGG	3 cut(s)	71, 687, 893
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	9 cut(s)	106, 193, 225, 226, 445, 803, 825, 884, 887
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	2 cut(s)	143, 484
BshFI	GGCC	2 cut(s)	192, 305
BsiEI	CGRYCG	2 cut(s)	143, 484
BsiHKAI	GWGCWC	1 cut(s)	1101
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	15, 30
BslI	CCNNNNNNNGG	3 cut(s)	391, 868, 988
BsmAI	GTCTC	4 cut(s)	205, 311, 726, 1183
BsnI	GGCC	2 cut(s)	192, 305
Bso31I	GGTCTC	1 cut(s)	1183
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	1101
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
BspACI	CCGC	5 cut(s)	104, 149, 532, 671, 1131
BspANI	GGCC	2 cut(s)	192, 305
BspCNI	CTCAG	3 cut(s)	793, 823, 952
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	1155
BspMAI	CTGCAG	2 cut(s)	435, 720
BspMI	ACCTGC	2 cut(s)	382, 1072
BspPI	GGATC	4 cut(s)	21, 300, 937, 1160
BspTNI	GGTCTC	1 cut(s)	1183
BsrDI	GCAATG	1 cut(s)	1040
BsrI	ACTGG	3 cut(s)	71, 687, 893
BssECI	CCNNGG	4 cut(s)	42, 207, 729, 987
BssMI	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
BssT1I	CCWWGG	4 cut(s)	42, 207, 729, 987
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	144, 489
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	3 cut(s)	780, 831, 939
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	403, 1070
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	82, 363
BstKTI	GATC	6 cut(s)	29, 169, 295, 945, 1061, 1168
BstMAI	GTCTC	4 cut(s)	205, 311, 726, 1183
BstMBI	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
BstMCI	CGRYCG	2 cut(s)	143, 484
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 145, 222, 248, 810
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	13, 438
BstSFI	CTRYAG	2 cut(s)	431, 716
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	9 cut(s)	106, 193, 225, 226, 445, 803, 825, 884, 887
BstX2I	RGATCY	5 cut(s)	26, 292, 942, 1058, 1165
BstYI	RGATCY	5 cut(s)	26, 292, 942, 1058, 1165
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	192, 305
BtsCI	GGATG	2 cut(s)	403, 1070
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	4 cut(s)	64, 694, 811, 900
BveI	ACCTGC	2 cut(s)	382, 1072
Cac8I	GCNNGC	1 cut(s)	478
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	82, 363
Csp6I	GTAC	3 cut(s)	752, 785, 1004
CviAII	CATG	4 cut(s)	470, 595, 736, 749
CviQI	GTAC	3 cut(s)	752, 785, 1004
DdeI	CTNAG	3 cut(s)	780, 831, 939
DpnI	GATC	6 cut(s)	28, 168, 294, 944, 1060, 1167
DpnII	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	4 cut(s)	42, 207, 729, 987
Eco31I	GGTCTC	1 cut(s)	1183
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	723
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	4 cut(s)	42, 207, 729, 987
ErhI	CCWWGG	4 cut(s)	42, 207, 729, 987
FaeI	CATG	4 cut(s)	473, 598, 739, 752
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	4 cut(s)	469, 594, 735, 748
FblI	GTMKAC	1 cut(s)	345
FokI	GGATG	2 cut(s)	410, 1077
FspBI	CTAG	2 cut(s)	407, 1056
GlaI	GCGC	2 cut(s)	81, 362
GsuI	CTGGAG	1 cut(s)	920
HaeIII	GGCC	2 cut(s)	192, 305
HapII	CCGG	2 cut(s)	15, 30
HhaI	GCGC	2 cut(s)	82, 363
Hin1II	CATG	4 cut(s)	473, 598, 739, 752
Hin6I	GCGC	2 cut(s)	80, 361
HinP1I	GCGC	2 cut(s)	80, 361
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	4 cut(s)	268, 299, 683, 739
HpaI	GTTAAC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	15, 30
Hpy166II	GTNNAC	5 cut(s)	87, 288, 346, 694, 746
Hpy188I	TCNGA	8 cut(s)	24, 178, 316, 523, 800, 832, 942, 1021
Hpy188III	TCNNGA	7 cut(s)	30, 296, 407, 470, 723, 1062, 1227
Hpy8I	GTNNAC	5 cut(s)	87, 288, 346, 694, 746
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	144, 489
HpyCH4V	TGCA	8 cut(s)	113, 433, 648, 718, 758, 950, 1070, 1081
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 145, 222, 248, 810
HpyF3I	CTNAG	3 cut(s)	780, 831, 939
Hsp92II	CATG	4 cut(s)	473, 598, 739, 752
HspAI	GCGC	2 cut(s)	80, 361
Kpn2I	TCCGGA	1 cut(s)	29
KspAI	GTTAAC	1 cut(s)	87
Kzo9I	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
LmnI	GCTCC	5 cut(s)	32, 91, 178, 358, 1159
Lsp1109I	GCAGC	9 cut(s)	106, 193, 225, 226, 445, 803, 825, 884, 887
LweI	GCATC	4 cut(s)	68, 463, 854, 929
MaeI	CTAG	2 cut(s)	407, 1056
MaeIII	GTNAC	2 cut(s)	448, 956
MalI	GATC	6 cut(s)	28, 168, 294, 944, 1060, 1167
MboI	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
MboII	GAAGA	3 cut(s)	458, 768, 1119
MflI	RGATCY	5 cut(s)	26, 292, 942, 1058, 1165
MhlI	GDGCHC	1 cut(s)	1101
MluCI	AATT	8 cut(s)	154, 515, 557, 577, 704, 759, 906, 1022
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	9 cut(s)	128, 316, 633, 826, 895, 989, 1030, 1129, 1179
MroI	TCCGGA	1 cut(s)	29
MroXI	GAANNNNTTC	2 cut(s)	252, 272
MseI	TTAA	4 cut(s)	86, 417, 765, 888
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	2 cut(s)	15, 30
MspR9I	CCNGG	2 cut(s)	15, 440
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	110, 145, 222, 248, 810
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
NlaIII	CATG	4 cut(s)	473, 598, 739, 752
NlaIV	GGNNCC	1 cut(s)	1155
NmuCI	GTSAC	1 cut(s)	956
NspI	RCATGY	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	723
PagI	TCATGA	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	382
PciI	ACATGT	1 cut(s)	748
PdmI	GAANNNNTTC	2 cut(s)	252, 272
PfeI	GAWTC	4 cut(s)	268, 299, 683, 739
PscI	ACATGT	1 cut(s)	748
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	1155
PstI	CTGCAG	2 cut(s)	435, 720
PsuI	RGATCY	5 cut(s)	26, 292, 942, 1058, 1165
RsaI	GTAC	3 cut(s)	753, 786, 1005
RsaNI	GTAC	3 cut(s)	752, 785, 1004
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	4 cut(s)	86, 417, 765, 888
Sau3AI	GATC	6 cut(s)	26, 166, 292, 942, 1058, 1165
ScrFI	CCNGG	2 cut(s)	15, 440
SduI	GDGCHC	1 cut(s)	1101
SfaNI	GCATC	4 cut(s)	68, 463, 854, 929
SfcI	CTRYAG	2 cut(s)	431, 716
Sfr274I	CTCGAG	1 cut(s)	723
SlaI	CTCGAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	723, 1094
SmoI	CTYRAG	2 cut(s)	723, 1094
Sse9I	AATT	8 cut(s)	154, 515, 557, 577, 704, 759, 906, 1022
SsiI	CCGC	5 cut(s)	104, 149, 532, 671, 1131
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	2 cut(s)	407, 1056
StyD4I	CCNGG	2 cut(s)	13, 438
StyI	CCWWGG	4 cut(s)	42, 207, 729, 987
TaaI	ACNGT	2 cut(s)	144, 489
TaqI	TCGA	2 cut(s)	169, 724
TaqII	GACCGA	1 cut(s)	498
TasI	AATT	8 cut(s)	154, 515, 557, 577, 704, 759, 906, 1022
TatI	WGTACW	2 cut(s)	751, 1003
TauI	GCSGC	2 cut(s)	107, 151
TfiI	GAWTC	4 cut(s)	268, 299, 683, 739
Tru1I	TTAA	4 cut(s)	86, 417, 765, 888
Tru9I	TTAA	4 cut(s)	86, 417, 765, 888
TscAI	CASTG	4 cut(s)	71, 694, 811, 900
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	9 cut(s)	94, 181, 213, 239, 433, 791, 813, 872, 875
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	4 cut(s)	435, 458, 570, 611
TspGWI	ACGGA	3 cut(s)	104, 305, 851
TspRI	CASTG	4 cut(s)	71, 694, 811, 900
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	4 cut(s)	515, 577, 704, 1022
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	723
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	252, 272
XspI	CTAG	2 cut(s)	407, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.