Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007915

Physical Location & Seq

Genomic Coordinates Reverse (-)

4421718 .. 4428296

Gene Structure 6579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4014 bp

ATGACCACAACTAGTTCATCACAGATTCTATGCCACACGGCGGCTTTCGTCTCCGAAACACTTTCGCAATCGGAGCTCCGCCGCCACCTCTTCTCCACGCTCCGCCGCAGGCTCCCGCCACCGTTGGGTTCCAGCCAAACCGCGGCTATTAAATCCCTCAACCTCGCCGAGGAAACCCTAGAAAACGCCATCGCCGAATCCAGCGCAGCCGTCCGGACCTCCTCCCTCCGCCTCTGTGAGAAGCTCCTCCTCTCCGGGCCCAAAAGCCCCTTCTCCTCGCTCCTCCTCTCCCTCATCTACGGCCTCTGCCGCCGCTCGATCGACGCCTCCGTCTGCATCCTCGAGATCTTCCGATCCGAGCCGGCGCTCGCCCGGACGGAATTGGCTCCGGTGCTGTTCGAGGAGCTCTTCCTCATCCACCTCCTCCCGGTTCTCCAGTGGTACAATCGCCGGCGATCGCAGATTCTGCCGCCTCTGTCCCCAAATGTCAGCTACGAAAACGACGACGACGTTTCGATCAACGACATGTCGGTGGCGTTTCCGGCGGGGTCGAATTCGCTGTCGAAGATGAGCGGGAACCAGACGGCGGGGCTGAAGGAGCTGGAGAGCAGCTACGAGAGGGTTTTGGATGAGAATTGTAGGGTTTTCAGTGAGTATTTCAGGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCGCCGGCTGTGGTGTTGGAATTGAGTGAAGGAAGTGATGAGTTCCGGTATGATGATCGGAGCACCGGAGAAGATGAAGCCGGATTTGAAAACGGACGGTACAATCCGATTTGGGCTGAAGCAGAAAATTCAGTTTCAGTTGAATCGTTCAGCAGGGGCAGCAGTGTAAGAAGAAGACCCAAGTCTCCCCCATTTTATCCTCAAAGAGTTGCACTTGATAATATCATCACTGGCCACAAACCCTCATGGAGTCTGGGAGCAACGCCAAATGTAAATTCAGATTCTGAGCTGGAAGAATCTTCTTTGGAGGACCATTCTCTTGATTCCTCTTTGGTTTCCGAAGCTGAAATTGAGGAAAACAACACAAGAATGGAATTATTTGATTCTAGGCGGAACCAAATCCAAAAGCTAAAGCAACCCATTTCCGCAGAATCAAGTCGTTCATCTCCAAATCCGCTCATGGCAGATTCTGAAAACCAATCTGGTGGTGGAACATTTACACCTCCTAAGGACTTTGTGTGTCCCATAACTAGTACCCTTTTTGATGATCCAGTGACACTTGAGACTGGTCAGACATATGAGCGAAAAGCCATCCAAGAATGGCTTGATAGAGGAAACTCAACCTGCCCAATTACCCGCCAGAATTTGCAAAGCACCCAACTGCCTAAGACCAACTATGTCCTCAAACGTCTAATTGCAAGTTGGCAAGAACAGAACCCTGGTATAGCCTTCAGCCCATCTGATAATCCAAGCCCACAGATTGAGCCAATGGTGAAACCCATAATGCCTTCAACTTCTCCTGTCAGTGTCATAAGCCAAGCTGCTATTGATAGTGCAGTTAGTGAGTTAAGAATTGCCATTACCCATCTTTGTATGTCAGAAATTCTCAAGGAGTCTGAAATGGCTGTTCTTCGTATTGAGCGTTTCTGGCAGGAAGCAAATGTGGAATGGGATATTCAGAATATGCTCTCAAAACCTCCGGTTATTAATGGTTTCGTGGAGGTTCTTTTCAATTCGGTCGATCCTAGAGTTCTAACAGCTACAGTTTTCCTCTTGTCTGAGCTGGGTTCAAGAGACAATGCTGTGATTCAGACACTAACCCAGGTTGACTCTGATGTGGAATGTATTGTGGCTCTTTTCAAAAAGGGGTTGATGGAGGCTGTTGTCTTGATATATCTGCTAAGGCATTGCATTCTTAATCTAGTAGAGATGGACCTGGTGGACTCTCTCTTAATGGTTATTAGAAAGAGAGATGATGATTTGGCTAATATGTGTCTAAAGCCTAAATCAGCTGCAGTGGTTTTACTGGGGCATATTGTTGGTGGCAGTGAATCAATCGCCAACACTGTGACTTCTGAAAAAGCACTTGAAAGAATAATCAGCAGTTTGGAATCTGAATCAGCAGAAGAGAAGACTGCAGCGATTGGGATCTTATTAAGATGTATGCAACAGGATGGGCACTGCAGGAACACAATAGCTGATAAAGCTGAGTTGGCTCCTGTTTTAGATAGCTTCATGGGTGCAAAGGATGAAGAACGGTTTGAGATAGTTCTCTTTTTGTCCGAGTTAGTGAAATTAAACAGGAGGACATTCAATGAACAAATCCTGCATATCATAAAGGATGAGGGCCCTTTCAGTACAATGCACACCCTCCTTATTTATCTACAGACTGCTGCTCAAGACCATTGTCCTGTTGTGGCCAGTCTACTACTTCAACTTGATCTTCTGGCAGAGCCGAGAAAGATGAGCATATACCGTGAAGAGGCAATGGACACTCTCATCTCATGTCTCAGAAATATTGAGGTCCCTGCTGCCCAAATCGCTGCTGCTGAGACCATTATGTCACTGCAAGGGACGTTCACCACATCCGGAAAGCCTCTTGCTAGGGCTGTCCTTCTAAAACGTGCTGGCCTTGACAAAATTTATAAACAACGTGTGCGAATGGATCAACTTAGCAACTTTTCTGGAGAAGATGAAACTGTTGAGGAAGAAAAGGCGGCTGATAACTGGGAAAGAAAAATGGCATTTGTTTTAGCAAGCCACGAGTTTGGTCTACTTTTTGAGGCCTTGGCAGAAGGATTGAAGAGCAGAATCTCAGAATTATGTTCTGCATGCTTTGTGTCAGCCACATGGCTCGTACACATGCTCAATGCCCTTCCAGATACAGGAATACGAGGAGCAGCTCGGCTGTGCTTGATTAAACGGTTCATATCAATATTCAAGTCTGCCAAGGATACTGAAGACAAAGCACTTGCTTTGCTGGCGTTGGGCAGCTTCATCCGTGATCCTGAGGGGATGCAAGAATTAAATTCTTGCAGGAGGGATATCGTAAAAGGCCTGAGAGAGCTTAAGAGATACACTCCCTTGGCATTTCAAATGCTAAAAGTCTTTTCCGATGGGCAAGACTCTAGTGCCGAATTGTGGGATCATAAAGAATTAGTTCAAGTAGACTGCAGTGAGAACGGAGAGGTTCTTTCAGTAGTTTGTTTCAAGGATAAAATATTTTCTGGCCATTCAGATGGAACTATAAAGGTGTGGACGGGTAAAGGTAGCATTCTCCATCTAATCCAGGAAATTCGAGAACATACAAAGGCAGTTACTAGCTTGGCAATTTTGCAATCAAAGGAGATTCTATACAGTGGCTCACTAGATAGAACAACAAGGGTCTGGTCTATCAGCAACGAAGGAATCCAGAGTGTAGAAGTCCATGATATGAAGGATCAAGTTCATAATCTGGCCGTCACCAATAGTTTTTCATGCTTCATTCCACAAAGCAATGGTATCAAGGCTCACTCATGGAGCGGAGGATCCAAAATGTTAAATTCCAGCAAATCTGTAAAGTGCTTTGCTCTGGTAAATGGGAAAATATATTGTGGATGCCATGATAGCAGTGTTCAGGAGATTGATTTGGTCACAGGAACACTCAGTACCATTCAAACCGGCTCCCGGAAATTACTTGGGAAATCAAATCCTATCCATTGCATTCAGTATCACAGTGGAATGATATATGCAGCAGGTTCTTCGTTGGATGGAGCAGCAGTGAAGATTTGGAGTGCTGCAAACTTCAGTTTGGTTGGGTCTCTGTCAACTACACTAGAAGTGCGGGCTATGGCAATAAGCTCGGAACTGATCTATTTGGGAGGTAAAGGAGGATGTGTGGAAATTTGGGATAGGGAGAAGCAGAACAAAATAATAGACACACTACAAACTGGCACAAACTGTAAGGTTCTTTCCTTGGCTATTGATCCCAATGAGGAAGTTTTGGTCACTGGAACATCTGATGGCCGAATCCAGGCATGGGGACTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

1337

Amino Acids

147.74

Weight (kDa)

5.27

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_LIN	PF23568	14 - 228	2.6e-19	E3 ubiquitin-protein ligase LIN-like, ARM repeat
U-box	PF04564	403 - 473	5.1e-17	U-box domain
ARM_LIN_2nd	PF23654	513 - 670	7.1e-60	E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_C	PF23628	679 - 1032	8.6e-145	Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
Beta-prop_WDR5	PF25175	1032 - 1137	2.2e-07	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	1036 - 1142	1.2e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	1041 - 1159	9.8e-09	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	1057 - 1151	1.1e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd	PF25172	1060 - 1130	7e-07	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	1065 - 1149	7e-06	WDHD1 first WD40 domain
WD40_Prp19	PF24814	1066 - 1156	2.1e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	1066 - 1144	1.8e-07	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	1157 - 1335	1.9e-07	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	1177 - 1335	8.2e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	1188 - 1334	1.3e-06	THOC3 beta-propeller domain
WD40_Prp19	PF24814	1192 - 1331	7.2e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73430 AT1G73430
fragaria_vesca	FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540
malus_domestica	MD02G1104000.v1.1 MD15G1224400.v1.1
prunus_persica	Prupe.7G190900_v2.0.a1
pyrus_communis	pycom02g08190 pycom15g19960
rosa_chinensis	RchiOBHm_Chr2g0096121 RchiOBHm_Chr2g0096281
rosa_laevigata	RLG00000016627
rosa_multiflora	Rmu_sc0005996.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145730
rosa_rugosa	Rorug02G0057400
rosa_samantha	Rh2AG104200 Rh2BG106300 Rh2CG108200 Rh2DG106900 Rh2DG107000
rosa_wichuraiana	Rw2G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2628
AasI	GACNNNNNNGTC	2 cut(s)	329, 2542
Acc36I	ACCTGC	2 cut(s)	1334, 3707
AccBSI	CCGCTC	4 cut(s)	315, 573, 1159, 3504
AccI	GTMKAC	3 cut(s)	2407, 2755, 3150
AccII	CGCG	1 cut(s)	143
AccIII	TCCGGA	2 cut(s)	213, 2570
AcoI	YGGCCR	5 cut(s)	934, 2400, 3211, 3438, 3985
AcuI	CTGAAG	5 cut(s)	614, 840, 1417, 2961, 3751
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	6 cut(s)	443, 803, 1237, 2341, 2841, 3631
AflII	CTTAAG	1 cut(s)	3050
AflIII	ACRYGT	2 cut(s)	525, 2635
AhlI	ACTAGT	2 cut(s)	11, 1232
AjnI	CCWGG	5 cut(s)	1420, 1803, 1917, 3270, 3993
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 961, 993
Alw21I	GWGCWC	3 cut(s)	78, 408, 767
Alw26I	GTCTC	7 cut(s)	55, 891, 1259, 1770, 2495, 2528, 3786
AlwNI	CAGNNNCTG	3 cut(s)	466, 986, 1172
Ama87I	CYCGRG	1 cut(s)	341
Aor13HI	TCCGGA	2 cut(s)	213, 2570
ApaI	GGGCCC	2 cut(s)	261, 2333
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AseI	ATTAAT	1 cut(s)	1689
AsiSI	GCGATCGC	1 cut(s)	458
Asp700I	GAANNNNTTC	1 cut(s)	3141
AspLEI	GCGC	2 cut(s)	206, 367
AspS9I	GGNCC	8 cut(s)	216, 257, 258, 1012, 1915, 2329, 2330, 2506
AsuC2I	CCSGG	4 cut(s)	256, 373, 428, 3649
AsuHPI	GGTGA	3 cut(s)	1486, 2554, 3436
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	4 cut(s)	216, 1012, 1915, 2506
AxyI	CCTNAGG	2 cut(s)	1209, 2991
BaeGI	GKGCMC	3 cut(s)	261, 2163, 2333
BalI	TGGCCA	3 cut(s)	936, 2402, 3213
BamHI	GGATCC	1 cut(s)	3509
BanII	GRGCYC	4 cut(s)	78, 261, 408, 2333
BauI	CACGAG	1 cut(s)	2744
BbsI	GAAGAC	3 cut(s)	883, 2120, 2949
Bbv12I	GWGCWC	3 cut(s)	78, 408, 767
BceAI	ACGGC	5 cut(s)	54, 194, 316, 600, 3425
BcgI	CGANNNNNNTGC	4 cut(s)	3705, 3739, 3804, 3838
BciT130I	CCWGG	5 cut(s)	1422, 1805, 1919, 3272, 3995
BciVI	GTATCC	1 cut(s)	2929
BcnI	CCSGG	4 cut(s)	256, 373, 428, 3649
BcoDI	GTCTC	7 cut(s)	55, 891, 1259, 1770, 2495, 2528, 3786
BcuI	ACTAGT	2 cut(s)	11, 1232
BfmI	CTRYAG	6 cut(s)	1743, 1995, 2118, 2164, 2366, 3154
BfoI	RGCGCY	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	3050
BfuAI	ACCTGC	2 cut(s)	1334, 3707
BfuI	GTATCC	1 cut(s)	2929
BglII	AGATCT	1 cut(s)	345
Bme1390I	CCNGG	9 cut(s)	256, 373, 428, 1422, 1805, 1919, 3272, 3649, 3995
Bme18I	GGWCC	4 cut(s)	216, 1012, 1915, 2506
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	8 cut(s)	216, 257, 258, 1012, 1915, 2329, 2330, 2506
BmrFI	CCNGG	9 cut(s)	256, 373, 428, 1422, 1805, 1919, 3272, 3649, 3995
BmrI	ACTGGG	2 cut(s)	2018, 2719
BmsI	GCATC	3 cut(s)	345, 2988, 3569
BmuI	ACTGGG	2 cut(s)	2018, 2719
BoxI	GACNNNNGTC	2 cut(s)	883, 2388
BpiI	GAAGAC	3 cut(s)	883, 2120, 2949
BplI	GAGNNNNNCTC	2 cut(s)	3046, 3078
BpmI	CTGGAG	3 cut(s)	419, 623, 2688
Bpu10I	CCTNAGC	1 cut(s)	1883
BpuEI	CTTGAG	3 cut(s)	1283, 1574, 2364
BpuMI	CCSGG	4 cut(s)	256, 373, 428, 3649
BsaBI	GATNNNNATC	1 cut(s)	2129
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	2 cut(s)	2528, 3786
BsaJI	CCNNGG	8 cut(s)	141, 168, 1420, 1803, 2769, 2931, 3066, 3936
BsaWI	WCCGGW	6 cut(s)	213, 388, 747, 767, 1681, 2570
BsaXI	ACNNNNNCTCC	8 cut(s)	77, 107, 678, 708, 3726, 3756, 3843, 3873
Bse118I	RCCGGY	4 cut(s)	361, 450, 706, 3641
Bse1I	ACTGG	9 cut(s)	436, 937, 1253, 1273, 2013, 2403, 2714, 3916, 3976
Bse21I	CCTNAGG	2 cut(s)	1209, 2991
Bse3DI	GCAATG	4 cut(s)	1888, 2475, 3484, 3679
Bse8I	GATNNNNATC	1 cut(s)	2129
BseAI	TCCGGA	2 cut(s)	213, 2570
BseBI	CCWGG	5 cut(s)	1422, 1805, 1919, 3272, 3995
BseDI	CCNNGG	8 cut(s)	141, 168, 1420, 1803, 2769, 2931, 3066, 3936
BseJI	GATNNNNATC	1 cut(s)	2129
BseMI	GCAATG	4 cut(s)	1888, 2475, 3484, 3679
BseMII	CTCAG	9 cut(s)	978, 1752, 2181, 2506, 2523, 2811, 2982, 3032, 3640
BseNI	ACTGG	9 cut(s)	436, 937, 1253, 1273, 2013, 2403, 2714, 3916, 3976
BseRI	GAGGAG	9 cut(s)	211, 236, 239, 265, 272, 275, 413, 416, 2892
BseSI	GKGCMC	3 cut(s)	261, 2163, 2333
BseYI	CCCAGC	1 cut(s)	1765
BsgI	GTGCAG	1 cut(s)	1557
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	3 cut(s)	321, 458, 1722
BsiEI	CGRYCG	3 cut(s)	321, 458, 1722
BsiHKAI	GWGCWC	3 cut(s)	78, 408, 767
BsiHKCI	CYCGRG	1 cut(s)	341
BslFI	GGGAC	4 cut(s)	463, 1209, 2492, 2569
BsmAI	GTCTC	7 cut(s)	55, 891, 1259, 1770, 2495, 2528, 3786
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	4 cut(s)	463, 1209, 2492, 2569
BsmI	GAATGC	3 cut(s)	1893, 3255, 3684
Bso31I	GGTCTC	2 cut(s)	2528, 3786
BsoBI	CYCGRG	1 cut(s)	341
Bsp120I	GGGCCC	2 cut(s)	257, 2329
Bsp1286I	GDGCHC	6 cut(s)	78, 261, 408, 767, 2163, 2333
Bsp13I	TCCGGA	2 cut(s)	213, 2570
BspCNI	CTCAG	9 cut(s)	979, 1753, 2182, 2505, 2524, 2810, 2983, 3033, 3639
BspEI	TCCGGA	2 cut(s)	213, 2570
BspFNI	CGCG	1 cut(s)	143
BspMAI	CTGCAG	4 cut(s)	1999, 2122, 2168, 3158
BspMI	ACCTGC	2 cut(s)	1334, 3707
BspQI	GCTCTTC	2 cut(s)	413, 2780
BspTI	CTTAAG	1 cut(s)	3050
BspTNI	GGTCTC	2 cut(s)	2528, 3786
BsrBI	CCGCTC	4 cut(s)	315, 573, 1159, 3504
BsrDI	GCAATG	4 cut(s)	1888, 2475, 3484, 3679
BsrFI	RCCGGY	4 cut(s)	361, 450, 706, 3641
BsrI	ACTGG	9 cut(s)	436, 937, 1253, 1273, 2013, 2403, 2714, 3916, 3976
BssAI	RCCGGY	4 cut(s)	361, 450, 706, 3641
BssECI	CCNNGG	8 cut(s)	141, 168, 1420, 1803, 2769, 2931, 3066, 3936
BssNI	GRCGYC	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	2744
BssT1I	CCWWGG	4 cut(s)	2769, 2931, 3066, 3936
Bst2BI	CACGAG	1 cut(s)	2744
Bst2UI	CCWGG	5 cut(s)	1422, 1805, 1919, 3272, 3995
Bst6I	CTCTTC	6 cut(s)	95, 413, 685, 2103, 2457, 2780
BstACI	GRCGYC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	3050
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	2 cut(s)	206, 367
BstMAI	GTCTC	7 cut(s)	55, 891, 1259, 1770, 2495, 2528, 3786
BstMCI	CGRYCG	3 cut(s)	321, 458, 1722
BstNI	CCWGG	5 cut(s)	1422, 1805, 1919, 3272, 3995
BstNSI	RCATGY	3 cut(s)	529, 2817, 2848
BstPAI	GACNNNNGTC	2 cut(s)	883, 2388
BstSCI	CCNGG	9 cut(s)	254, 371, 426, 1420, 1803, 1917, 3270, 3647, 3993
BstSFI	CTRYAG	6 cut(s)	1743, 1995, 2118, 2164, 2366, 3154
BstSLI	GKGCMC	3 cut(s)	261, 2163, 2333
BstUI	CGCG	1 cut(s)	143
BstV2I	GAAGAC	3 cut(s)	883, 2120, 2949
BstX2I	RGATCY	3 cut(s)	345, 2130, 3509
BstXI	CCANNNNNNTGG	3 cut(s)	1187, 2750, 3221
BstYI	RGATCY	3 cut(s)	345, 2130, 3509
Bsu36I	CCTNAGG	2 cut(s)	1209, 2991
BsuI	GTATCC	1 cut(s)	2929
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	175
BtsI	GCAGTG	8 cut(s)	871, 2004, 2035, 2161, 2546, 3163, 3598, 3747
BveI	ACCTGC	2 cut(s)	1334, 3707
CaiI	CAGNNNCTG	3 cut(s)	466, 986, 1172
CfoI	GCGC	2 cut(s)	206, 367
Cfr10I	RCCGGY	4 cut(s)	361, 450, 706, 3641
Cfr13I	GGNCC	8 cut(s)	216, 257, 258, 1012, 1915, 2329, 2330, 2506
Cfr42I	CCGCGG	1 cut(s)	144
CseI	GACGC	1 cut(s)	332
CsiI	ACCWGGT	1 cut(s)	1917
Csp6I	GTAC	6 cut(s)	442, 802, 1236, 2340, 2840, 3630
CviQI	GTAC	6 cut(s)	442, 802, 1236, 2340, 2840, 3630
DrdI	GACNNNNNNGTC	2 cut(s)	329, 2542
DseDI	GACNNNNNNGTC	2 cut(s)	329, 2542
EaeI	YGGCCR	5 cut(s)	934, 2400, 3211, 3438, 3985
Eam1104I	CTCTTC	6 cut(s)	95, 413, 685, 2103, 2457, 2780
EarI	CTCTTC	6 cut(s)	95, 413, 685, 2103, 2457, 2780
EciI	GGCGGA	5 cut(s)	68, 92, 218, 693, 1108
Ecl136II	GAGCTC	2 cut(s)	76, 406
Eco130I	CCWWGG	4 cut(s)	2769, 2931, 3066, 3936
Eco147I	AGGCCT	2 cut(s)	2768, 3039
Eco24I	GRGCYC	4 cut(s)	78, 261, 408, 2333
Eco31I	GGTCTC	2 cut(s)	2528, 3786
Eco32I	GATATC	1 cut(s)	3028
Eco47I	GGWCC	4 cut(s)	216, 1012, 1915, 2506
Eco53kI	GAGCTC	2 cut(s)	76, 406
Eco57I	CTGAAG	5 cut(s)	614, 840, 1417, 2961, 3751
Eco81I	CCTNAGG	2 cut(s)	1209, 2991
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	76, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO109I	RGGNCCY	3 cut(s)	2329, 2330, 2506
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	5 cut(s)	1420, 1803, 1917, 3270, 3993
EcoRV	GATATC	1 cut(s)	3028
EcoT14I	CCWWGG	4 cut(s)	2769, 2931, 3066, 3936
EcoT38I	GRGCYC	4 cut(s)	78, 261, 408, 2333
ErhI	CCWWGG	4 cut(s)	2769, 2931, 3066, 3936
Esp3I	CGTCTC	1 cut(s)	55
FalI	AAGNNNNNCTT	2 cut(s)	1290, 1322
FaqI	GGGAC	4 cut(s)	463, 1209, 2492, 2569
FauI	CCCGC	6 cut(s)	123, 538, 566, 580, 1346, 3798
FauNDI	CATATG	1 cut(s)	1279
FblI	GTMKAC	3 cut(s)	2407, 2755, 3150
FriOI	GRGCYC	4 cut(s)	78, 261, 408, 2333
GlaI	GCGC	2 cut(s)	205, 366
GsaI	CCCAGC	1 cut(s)	1769
GsuI	CTGGAG	3 cut(s)	419, 623, 2688
HaeII	RGCGCY	1 cut(s)	368
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	206, 367
Hin1I	GRCGYC	1 cut(s)	324
Hin6I	GCGC	2 cut(s)	204, 365
HinP1I	GCGC	2 cut(s)	204, 365
HincII	GTYRAC	2 cut(s)	1810, 3789
HindII	GTYRAC	2 cut(s)	1810, 3789
HphI	GGTGA	3 cut(s)	1486, 2554, 3436
Hpy166II	GTNNAC	9 cut(s)	1810, 1924, 2408, 2562, 2756, 2842, 3151, 3240, 3789
Hpy8I	GTNNAC	9 cut(s)	1810, 1924, 2408, 2562, 2756, 2842, 3151, 3240, 3789
Hpy99I	CGWCG	4 cut(s)	326, 506, 509, 512
HpyCH4IV	ACGT	5 cut(s)	510, 1390, 2558, 2605, 2635
HpySE526I	ACGT	5 cut(s)	510, 1390, 2558, 2605, 2635
Hsp92I	GRCGYC	1 cut(s)	324
HspAI	GCGC	2 cut(s)	204, 365
Kpn2I	TCCGGA	2 cut(s)	213, 2570
KroI	GCCGGC	3 cut(s)	361, 450, 706
KroNI	GCCGGC	3 cut(s)	363, 452, 708
KspI	CCGCGG	1 cut(s)	144
LguI	GCTCTTC	2 cut(s)	413, 2780
LweI	GCATC	3 cut(s)	345, 2988, 3569
MabI	ACCWGGT	1 cut(s)	1917
MaeII	ACGT	5 cut(s)	510, 1390, 2558, 2605, 2635
MaeIII	GTNAC	7 cut(s)	1255, 2050, 2544, 3298, 3442, 3613, 3967
MbiI	CCGCTC	4 cut(s)	315, 573, 1159, 3504
MflI	RGATCY	3 cut(s)	345, 2130, 3509
MhlI	GDGCHC	6 cut(s)	78, 261, 408, 767, 2163, 2333
MlsI	TGGCCA	3 cut(s)	936, 2402, 3213
MluNI	TGGCCA	3 cut(s)	936, 2402, 3213
MlyI	GAGTC	5 cut(s)	961, 1604, 1805, 1919, 3101
MmeI	TCCRAC	2 cut(s)	699, 3708
Mox20I	TGGCCA	3 cut(s)	936, 2402, 3213
MreI	CGCCGGCG	1 cut(s)	450
MroI	TCCGGA	2 cut(s)	213, 2570
MroNI	GCCGGC	3 cut(s)	361, 450, 706
MroXI	GAANNNNTTC	1 cut(s)	3141
MscI	TGGCCA	3 cut(s)	936, 2402, 3213
MslI	CAYNNNNRTG	3 cut(s)	530, 1070, 3219
Msp20I	TGGCCA	3 cut(s)	936, 2402, 3213
MspA1I	CMGCKG	2 cut(s)	143, 1994
MspCI	CTTAAG	1 cut(s)	3050
MspR9I	CCNGG	9 cut(s)	256, 373, 428, 1422, 1805, 1919, 3272, 3649, 3995
Mva1269I	GAATGC	3 cut(s)	1893, 3255, 3684
MvaI	CCWGG	5 cut(s)	1422, 1805, 1919, 3272, 3995
MvnI	CGCG	1 cut(s)	143
NaeI	GCCGGC	3 cut(s)	363, 452, 708
NciI	CCSGG	4 cut(s)	256, 373, 428, 3649
NdeI	CATATG	1 cut(s)	1279
NgoMIV	GCCGGC	3 cut(s)	361, 450, 706
NmeAIII	GCCGAG	3 cut(s)	193, 2463, 2866
NmuCI	GTSAC	6 cut(s)	1255, 2050, 2544, 3442, 3613, 3967
NspI	RCATGY	3 cut(s)	529, 2817, 2848
PaeI	GCATGC	1 cut(s)	2817
PaeR7I	CTCGAG	1 cut(s)	341
PceI	AGGCCT	2 cut(s)	2768, 3039
PciI	ACATGT	1 cut(s)	525
PciSI	GCTCTTC	2 cut(s)	413, 2780
PcsI	WCGNNNNNNNCGW	5 cut(s)	192, 327, 501, 507, 1621
PctI	GAATGC	3 cut(s)	1893, 3255, 3684
PdiI	GCCGGC	3 cut(s)	363, 452, 708
PdmI	GAANNNNTTC	1 cut(s)	3141
PfoI	TCCNGGA	2 cut(s)	3270, 3647
Ple19I	CGATCG	2 cut(s)	321, 458
PleI	GAGTC	5 cut(s)	960, 1603, 1805, 1919, 3101
PpsI	GAGTC	5 cut(s)	960, 1603, 1805, 1919, 3101
PpuMI	RGGWCCY	1 cut(s)	2506
PscI	ACATGT	1 cut(s)	525
PshAI	GACNNNNGTC	2 cut(s)	883, 2388
PshBI	ATTAAT	1 cut(s)	1689
PsiI	TTATAA	1 cut(s)	2628
Psp124BI	GAGCTC	2 cut(s)	78, 408
Psp5II	RGGWCCY	1 cut(s)	2506
Psp6I	CCWGG	5 cut(s)	1420, 1803, 1917, 3270, 3993
PspFI	CCCAGC	1 cut(s)	1765
PspGI	CCWGG	5 cut(s)	1420, 1803, 1917, 3270, 3993
PspOMI	GGGCCC	2 cut(s)	257, 2329
PspPI	GGNCC	8 cut(s)	216, 257, 258, 1012, 1915, 2329, 2330, 2506
PspPPI	RGGWCCY	1 cut(s)	2506
PsrI	GAACNNNNNNTAC	2 cut(s)	3613, 3645
PstI	CTGCAG	4 cut(s)	1999, 2122, 2168, 3158
PstNI	CAGNNNCTG	3 cut(s)	466, 986, 1172
PsuI	RGATCY	3 cut(s)	345, 2130, 3509
PvuI	CGATCG	2 cut(s)	321, 458
PvuII	CAGCTG	1 cut(s)	1994
RgaI	GCGATCGC	1 cut(s)	458
RsaI	GTAC	6 cut(s)	443, 803, 1237, 2341, 2841, 3631
RsaNI	GTAC	6 cut(s)	442, 802, 1236, 2340, 2840, 3630
RseI	CAYNNNNRTG	3 cut(s)	530, 1070, 3219
SacI	GAGCTC	2 cut(s)	78, 408
SacII	CCGCGG	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	413, 2780
Sau96I	GGNCC	8 cut(s)	216, 257, 258, 1012, 1915, 2329, 2330, 2506
SchI	GAGTC	5 cut(s)	961, 1604, 1805, 1919, 3101
ScrFI	CCNGG	9 cut(s)	256, 373, 428, 1422, 1805, 1919, 3272, 3649, 3995
SduI	GDGCHC	6 cut(s)	78, 261, 408, 767, 2163, 2333
SexAI	ACCWGGT	1 cut(s)	1917
SfaAI	GCGATCGC	1 cut(s)	458
SfaNI	GCATC	3 cut(s)	345, 2988, 3569
SfcI	CTRYAG	6 cut(s)	1743, 1995, 2118, 2164, 2366, 3154
Sfr274I	CTCGAG	1 cut(s)	341
Sfr303I	CCGCGG	1 cut(s)	144
SgfI	GCGATCGC	1 cut(s)	458
SgrAI	CRCCGGYG	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	4 cut(s)	216, 1012, 1915, 2506
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	3 cut(s)	530, 1070, 3219
SmlI	CTYRAG	5 cut(s)	341, 1262, 1589, 2379, 3050
SmoI	CTYRAG	5 cut(s)	341, 1262, 1589, 2379, 3050
SpeI	ACTAGT	2 cut(s)	11, 1232
SphI	GCATGC	1 cut(s)	2817
SseBI	AGGCCT	2 cut(s)	2768, 3039
SspI	AATATT	3 cut(s)	2500, 2919, 3204
SstI	GAGCTC	2 cut(s)	78, 408
StuI	AGGCCT	2 cut(s)	2768, 3039
StyD4I	CCNGG	9 cut(s)	254, 371, 426, 1420, 1803, 1917, 3270, 3647, 3993
StyI	CCWWGG	4 cut(s)	2769, 2931, 3066, 3936
TaiI	ACGT	5 cut(s)	513, 1393, 2561, 2608, 2638
TaqI	TCGA	9 cut(s)	317, 321, 342, 399, 515, 551, 563, 1722, 3280
TaqII	GACCGA	1 cut(s)	1708
TatI	WGTACW	1 cut(s)	2339
TauI	GCSGC	8 cut(s)	44, 84, 108, 146, 312, 315, 472, 2702
TseFI	GTSAC	6 cut(s)	1255, 2050, 2544, 3442, 3613, 3967
Tsp45I	GTSAC	6 cut(s)	1255, 2050, 2544, 3442, 3613, 3967
TspGWI	ACGGA	5 cut(s)	319, 392, 810, 2972, 3180
Vha464I	CTTAAG	1 cut(s)	3050
VpaK11BI	GGWCC	4 cut(s)	216, 1012, 1915, 2506
VspI	ATTAAT	1 cut(s)	1689
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	3 cut(s)	529, 2817, 2848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1187
XhoI	CTCGAG	1 cut(s)	341
XmiI	GTMKAC	3 cut(s)	2407, 2755, 3150
XmnI	GAANNNNTTC	1 cut(s)	3141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.