Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007915

Physical Location & Seq

Genomic Coordinates Forward (+)

83635956 .. 83644346

Gene Structure 8391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGGCGAGTAAGCCCGGCGTTCCGAGATCGGGAGCTATTTCCAAGGGCTACAACTTCGCATCTCACTGGGAACAGAACGCGCCGTTAACGGAGCAGCAACAAGCGGCCATTGCAAACCTCTCCCACGCCGTCGCAGAGCGACCGTTGCCGCCCAATTTGGCGCAAGATCGAATCTCGGAGCAGCAGAATGGCCTGTCAGTCTCCACCAAGGGCAGCTCTTTTGGCTTGGAACACTCTGCTGCTATGGAAGCCGTTCTTGTCAATACGAATCAGTTTTACACATGGTTTACGGATCTTGAATCAGCCTTGAAGTCCGAGACAGAGGAGAAGTATCGCCACTATGTAGACACATTGATGGAGCGCATACAGATATGTGATGGTATCCTTCAGCAGGTGGATGATACTCTAGACTTGTTTAATGAACTACAACTGCAGCACCAGGCAGTAGCAACAAAGACTAAAACTCTTCATGATGCGTGCGACCGACTGTTGATAGAAAAGCAACGACTGATTGAATTTTCAGAAGCACTCCGCAGTAAGCTCAACTACTTTGATGAATTGGAGAATGTAAGGTATGTTGAAAGCAATCCGCAATATGCCGAATCCAGTGTTTACCTACTCAAATTTCGCCAACTGCAGTCTCGAGCCTTGGGCATGATTCGTTCACATGTACTTGCAATTCTTAAAGGTGCTTCTTCTCAGGTACAGGCAGCTATCGGAAGCAGTGGTGGCAGCAAAGCTTCTGTTTCTGAGGGTGTAGAAGCATCTGTTATATATGTCCGTTTCAAGGCAGCAGCAAGTGAGCTTAAACCAGTGCTGGAGGAAATTGAAAGCAGAGCATCAAGGAAAGAATATACTCAGATCCTTGCAGAATGTCACAAGCTATACTGCGAACAACGCCTTTCCTTGGTAAGAGGTCAAACTGGGTACAATTCAGCAGTATTGGGATTCCAGGTCACAGCTGATGGGATTTTTCCTTCTGTTGTCTGTCAGCTTGAGCACCAACTTTTTGACCACTTTTTCCCATCTTCCGCGGAGGACATTTCAAGTTTGGCTCCATTGATAGATCCTCTGTCTACATATTTATACGATACACTACGGCCAAAGCTTATTCATGAAACAAATATTGATTCTCTTTGCGAACTTGTTGATATATTGAAAGTTGAAGTCCTAGGTGAACAGTTAAGTCGGCGGAGTGAATCATTAGCTGGCCTACGTCCTACACTGGAGAGAATTCTTGCTGATGTTCATGAGAGGTTGACTTTCCGTGCTCGAACCCATATTCGTGATGAGATAGCAAATTATTTACCTTTGGACGAAGATTTGGATTACCCTACAAAGCTGGAAAAAGCTGCGACAGATGAACTTGAAACTACTTCTGATGATGAAAACCTCGTTTTTAAGACCTGGTATCCACCTCTAGAGAAAACACTATCTTGTCTGTCAAAGCTGTATCGCTGCTTAGAACCTGAAGTTTTCACTGGTTTAGCACAGGAAGTTGTCGAAGTTTGTTCAATATCTATTCAGAAAGCTAGTAAACTCATTGCAAAGAGATCATCGCCAATGGATGGTCAGCTCTTCCTCATAAAGCATCTTCTTATCTTAAGGGAGAAGATTGCACCTTTCGATATTGAGTTTTCTGTTACACACAAGGAGCTTGATTTCTCGCACTTGCTGGAGCATCTACGGCGGATTCTTAGAGGTCAAGCCTCTCTATTTGACTGGTCCAGGACAACTTCGCTGGCAAGAACCTTATCTCCCCGTGTTTTGGAAAGTCAAATAGATGCCAAGAAGGAACTGGAGAAAAGCCTAAAAGCCACTTGTGAGGAGTTCATTATGTCGGTCACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTTACCAAGGTCACAGCTGTGAAAGTTGCAATGTCAGGCAGCCAGAATCAAAAGGTAGAGTTGGTTATGGCTAAACCACTCAAAGATCAAGCTTTTGCAACTCCAGATAAAGTAGCTGAACTTGTTCAAAAGGTAACCACTGCTATTCACCAAGAGTTGCCAATGGTAACGAGGAAAATGAAGCTTTATCTGCAGAACTCATCAACACGGACAATTCTATTCAAACCAATACAGACAAATATTGTGGAAGCCCATGTACAAGTACAGTCCCTGCTAAAGGCTGAGTATTCACCTGAAGAAATACAAGGAATGATAAAGATGCCGTCTATTCAAGACCTACAAGCACAACTTGATACTCTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

747

Amino Acids

84.09

Weight (kDa)

5.73

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG3_N	PF04136	114 - 190	2.8e-17	Conserved oligomeric Golgi complex subunit 3, N-terminal
COG3_N	PF04136	190 - 229	8.1e-09	Conserved oligomeric Golgi complex subunit 3, N-terminal
COG3_C	PF20671	256 - 558	5.7e-90	Conserved oligomeric Golgi complex subunit 3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73430 AT1G73430
fragaria_vesca	FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540 FvH4_1g09540
malus_domestica	MD02G1104000.v1.1 MD15G1224400.v1.1
prunus_persica	Prupe.7G190900_v2.0.a1
pyrus_communis	pycom02g08190 pycom15g19960
rosa_chinensis	RchiOBHm_Chr2g0096121 RchiOBHm_Chr2g0096281
rosa_laevigata	RLG00000016627
rosa_multiflora	Rmu_sc0005996.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145730
rosa_rugosa	Rorug02G0057400
rosa_samantha	Rh2AG104200 Rh2BG106300 Rh2CG108200 Rh2DG106900 Rh2DG107000
rosa_wichuraiana	Rw2G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	382
Acc36I	ACCTGC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	1568
AccI	GTMKAC	2 cut(s)	345, 1076
AccII	CGCG	2 cut(s)	80, 1034
AciI	CCGC	8 cut(s)	104, 149, 532, 590, 1032, 1034, 1192, 1690
AclWI	GGATC	5 cut(s)	300, 856, 1061, 1856, 1869
AcoI	YGGCCR	2 cut(s)	105, 1100
AcsI	RAATTY	3 cut(s)	515, 623, 1233
AcuI	CTGAAG	3 cut(s)	371, 1491, 2193
AfaI	GTAC	5 cut(s)	672, 705, 929, 2136, 2142
AfiI	CCNNNNNNNGG	7 cut(s)	29, 391, 787, 907, 1568, 1768, 2155
AflII	CTTAAG	1 cut(s)	1603
AflIII	ACRYGT	1 cut(s)	667
AjnI	CCWGG	4 cut(s)	438, 951, 1406, 1727
AleI	CACNNNNGTG	1 cut(s)	1895
AloI	GAACNNNNNNTCC	2 cut(s)	1741, 1773
Alw21I	GWGCWC	2 cut(s)	1002, 1273
Alw26I	GTCTC	3 cut(s)	205, 311, 645
AlwI	GGATC	5 cut(s)	300, 856, 1061, 1856, 1869
AlwNI	CAGNNNCTG	1 cut(s)	2149
Ama87I	CYCGRG	1 cut(s)	642
AoxI	GGCC	4 cut(s)	105, 190, 1100, 1210
ApoI	RAATTY	3 cut(s)	515, 623, 1233
Asp700I	GAANNNNTTC	2 cut(s)	252, 2001
AspA2I	CCTAGG	1 cut(s)	1171
AspLEI	GCGC	3 cut(s)	82, 163, 363
AspS9I	GGNCC	1 cut(s)	1725
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	3 cut(s)	1187, 2018, 2160
AvaI	CYCGRG	1 cut(s)	642
AvaII	GGWCC	1 cut(s)	1725
AvrII	CCTAGG	1 cut(s)	1171
BamHI	GGATCC	1 cut(s)	1861
BarI	GAAGNNNNNNTAC	2 cut(s)	2118, 2150
Bbv12I	GWGCWC	2 cut(s)	1002, 1273
BccI	CCATC	5 cut(s)	349, 371, 959, 1033, 1562
BceAI	ACGGC	6 cut(s)	67, 113, 236, 1115, 1703, 2185
BciT130I	CCWGG	4 cut(s)	440, 953, 1408, 1729
BciVI	GTATCC	2 cut(s)	392, 1422
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	3 cut(s)	205, 311, 645
BfaI	CTAG	5 cut(s)	407, 1172, 1421, 1533, 1853
BfmI	CTRYAG	4 cut(s)	431, 635, 2069, 2240
BfrI	CTTAAG	1 cut(s)	1603
BfuAI	ACCTGC	1 cut(s)	382
BfuI	GTATCC	2 cut(s)	392, 1422
BlnI	CCTAGG	1 cut(s)	1171
Bme1390I	CCNGG	5 cut(s)	15, 440, 953, 1408, 1729
Bme18I	GGWCC	1 cut(s)	1725
BmeT110I	CYCGRG	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	1725
BmiI	GGNNCC	2 cut(s)	1056, 1863
BmrFI	CCNGG	5 cut(s)	15, 440, 953, 1408, 1729
BmrI	ACTGGG	2 cut(s)	76, 933
BmsI	GCATC	8 cut(s)	68, 463, 773, 848, 1600, 1690, 1774, 2187
BmuI	ACTGGG	2 cut(s)	76, 933
BpmI	CTGGAG	5 cut(s)	839, 1247, 1697, 1820, 1965
BpuEI	CTTGAG	1 cut(s)	1016
BpuMI	CCSGG	1 cut(s)	15
BsaJI	CCNNGG	7 cut(s)	42, 207, 648, 906, 1032, 1171, 1884
BsaXI	ACNNNNNCTCC	2 cut(s)	1741, 1771
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 391, 787, 907, 1568, 1768, 2155
Bse1I	ACTGG	8 cut(s)	71, 606, 812, 928, 1230, 1486, 1727, 1803
Bse3DI	GCAATG	3 cut(s)	108, 1542, 1914
BseBI	CCWGG	4 cut(s)	440, 953, 1408, 1729
BseDI	CCNNGG	7 cut(s)	42, 207, 648, 906, 1032, 1171, 1884
BseGI	GGATG	2 cut(s)	403, 1573
BseLI	CCNNNNNNNGG	7 cut(s)	29, 391, 787, 907, 1568, 1768, 2155
BseMI	GCAATG	3 cut(s)	108, 1542, 1914
BseMII	CTCAG	4 cut(s)	713, 741, 872, 2151
BseNI	ACTGG	8 cut(s)	71, 606, 812, 928, 1230, 1486, 1727, 1803
BseRI	GAGGAG	2 cut(s)	338, 1841
Bsh1236I	CGCG	2 cut(s)	80, 1034
Bsh1285I	CGRYCG	2 cut(s)	143, 484
BshFI	GGCC	4 cut(s)	107, 192, 1102, 1212
BsiEI	CGRYCG	2 cut(s)	143, 484
BsiHKAI	GWGCWC	2 cut(s)	1002, 1273
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	2131
BslI	CCNNNNNNNGG	7 cut(s)	29, 391, 787, 907, 1568, 1768, 2155
BsmAI	GTCTC	3 cut(s)	205, 311, 645
BsmFI	GGGAC	1 cut(s)	2131
BsnI	GGCC	4 cut(s)	107, 192, 1102, 1212
BsoBI	CYCGRG	1 cut(s)	642
Bsp1286I	GDGCHC	2 cut(s)	1002, 1273
Bsp1407I	TGTACA	1 cut(s)	2134
Bsp143I	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
BspACI	CCGC	8 cut(s)	104, 149, 532, 590, 1032, 1034, 1192, 1690
BspANI	GGCC	4 cut(s)	107, 192, 1102, 1212
BspCNI	CTCAG	4 cut(s)	712, 742, 871, 2152
BspFNI	CGCG	2 cut(s)	80, 1034
BspHI	TCATGA	3 cut(s)	469, 1114, 1249
BspLI	GGNNCC	2 cut(s)	1056, 1863
BspMAI	CTGCAG	3 cut(s)	435, 639, 2073
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	5 cut(s)	300, 856, 1061, 1856, 1869
BspQI	GCTCTTC	1 cut(s)	1583
BspTI	CTTAAG	1 cut(s)	1603
BsrDI	GCAATG	3 cut(s)	108, 1542, 1914
BsrGI	TGTACA	1 cut(s)	2134
BsrI	ACTGG	8 cut(s)	71, 606, 812, 928, 1230, 1486, 1727, 1803
BssECI	CCNNGG	7 cut(s)	42, 207, 648, 906, 1032, 1171, 1884
BssMI	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
BssT1I	CCWWGG	6 cut(s)	42, 207, 648, 906, 1171, 1884
Bst2UI	CCWGG	4 cut(s)	440, 953, 1408, 1729
Bst4CI	ACNGT	5 cut(s)	144, 489, 1182, 2145, 2241
Bst6I	CTCTTC	2 cut(s)	471, 1583
BstAFI	CTTAAG	1 cut(s)	1603
BstAUI	TGTACA	1 cut(s)	2134
BstC8I	GCNNGC	3 cut(s)	478, 1210, 1743
BstDEI	CTNAG	7 cut(s)	699, 750, 858, 1462, 1697, 1848, 2160
BstDSI	CCRYGG	1 cut(s)	1032
BstEII	GGTNACC	1 cut(s)	2011
BstENI	CCTNNNNNAGG	2 cut(s)	389, 2153
BstF5I	GGATG	2 cut(s)	403, 1573
BstFNI	CGCG	2 cut(s)	80, 1034
BstHHI	GCGC	3 cut(s)	82, 163, 363
BstKTI	GATC	8 cut(s)	29, 169, 295, 864, 1069, 1556, 1864, 1966
BstMAI	GTCTC	3 cut(s)	205, 311, 645
BstMBI	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
BstMCI	CGRYCG	2 cut(s)	143, 484
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 145, 222, 248, 729, 897, 1687, 2068
BstNI	CCWGG	4 cut(s)	440, 953, 1408, 1729
BstNSI	RCATGY	1 cut(s)	671
BstPI	GGTNACC	1 cut(s)	2011
BstSCI	CCNGG	5 cut(s)	13, 438, 951, 1406, 1727
BstSFI	CTRYAG	4 cut(s)	431, 635, 2069, 2240
BstUI	CGCG	2 cut(s)	80, 1034
BstX2I	RGATCY	4 cut(s)	292, 861, 1066, 1861
BstYI	RGATCY	4 cut(s)	292, 861, 1066, 1861
BsuI	GTATCC	2 cut(s)	392, 1422
BsuRI	GGCC	4 cut(s)	107, 192, 1102, 1212
BtgI	CCRYGG	1 cut(s)	1032
BtgZI	GCGATG	1 cut(s)	1542
BtsCI	GGATG	2 cut(s)	403, 1573
BtsI	GCAGTG	2 cut(s)	730, 2016
BtsIMutI	CAGTG	7 cut(s)	64, 613, 730, 819, 1223, 1479, 2016
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	478, 1210, 1743
CaiI	CAGNNNCTG	1 cut(s)	2149
CciI	TCATGA	3 cut(s)	469, 1114, 1249
CfoI	GCGC	3 cut(s)	82, 163, 363
Cfr13I	GGNCC	1 cut(s)	1725
Cfr42I	CCGCGG	1 cut(s)	1035
CsiI	ACCWGGT	1 cut(s)	1406
Csp6I	GTAC	5 cut(s)	671, 704, 928, 2135, 2141
CspCI	CAANNNNNGTGG	2 cut(s)	2103, 2138
CviAII	CATG	7 cut(s)	282, 470, 655, 668, 1115, 1250, 2132
CviQI	GTAC	5 cut(s)	671, 704, 928, 2135, 2141
DdeI	CTNAG	7 cut(s)	699, 750, 858, 1462, 1697, 1848, 2160
DpnI	GATC	8 cut(s)	28, 168, 294, 863, 1068, 1555, 1863, 1965
DpnII	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
EaeI	YGGCCR	2 cut(s)	105, 1100
Eam1104I	CTCTTC	2 cut(s)	471, 1583
EarI	CTCTTC	2 cut(s)	471, 1583
EciI	GGCGGA	2 cut(s)	1207, 1705
Eco130I	CCWWGG	6 cut(s)	42, 207, 648, 906, 1171, 1884
Eco47I	GGWCC	1 cut(s)	1725
Eco57I	CTGAAG	3 cut(s)	371, 1491, 2193
Eco88I	CYCGRG	1 cut(s)	642
Eco91I	GGTNACC	1 cut(s)	2011
EcoNI	CCTNNNNNAGG	2 cut(s)	389, 2153
EcoO65I	GGTNACC	1 cut(s)	2011
EcoRI	GAATTC	1 cut(s)	1233
EcoRII	CCWGG	4 cut(s)	438, 951, 1406, 1727
EcoT14I	CCWWGG	6 cut(s)	42, 207, 648, 906, 1171, 1884
ErhI	CCWWGG	6 cut(s)	42, 207, 648, 906, 1171, 1884
FaeI	CATG	7 cut(s)	285, 473, 658, 671, 1118, 1253, 2135
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 2211, 2243
FaqI	GGGAC	1 cut(s)	2131
FatI	CATG	7 cut(s)	281, 469, 654, 667, 1114, 1249, 2131
FblI	GTMKAC	2 cut(s)	345, 1076
FokI	GGATG	2 cut(s)	410, 1580
FspBI	CTAG	5 cut(s)	407, 1172, 1421, 1533, 1853
GlaI	GCGC	3 cut(s)	81, 162, 362
GsuI	CTGGAG	5 cut(s)	839, 1247, 1697, 1820, 1965
HaeIII	GGCC	4 cut(s)	107, 192, 1102, 1212
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	3 cut(s)	82, 163, 363
Hin1II	CATG	7 cut(s)	285, 473, 658, 671, 1118, 1253, 2135
Hin6I	GCGC	3 cut(s)	80, 161, 361
HinP1I	GCGC	3 cut(s)	80, 161, 361
HincII	GTYRAC	2 cut(s)	87, 1260
HindII	GTYRAC	2 cut(s)	87, 1260
HindIII	AAGCTT	4 cut(s)	738, 1106, 1968, 2060
HpaI	GTTAAC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	3 cut(s)	1187, 2018, 2160
Hpy166II	GTNNAC	9 cut(s)	87, 288, 346, 613, 665, 1077, 1178, 1260, 1538
Hpy188I	TCNGA	9 cut(s)	24, 178, 316, 523, 719, 751, 861, 1381, 1527
Hpy8I	GTNNAC	9 cut(s)	87, 288, 346, 613, 665, 1077, 1178, 1260, 1538
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	395, 987, 1786
HpyCH4III	ACNGT	5 cut(s)	144, 489, 1182, 2145, 2241
HpyCH4IV	ACGT	1 cut(s)	1216
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 145, 222, 248, 729, 897, 1687, 2068
HpyF3I	CTNAG	7 cut(s)	699, 750, 858, 1462, 1697, 1848, 2160
HpySE526I	ACGT	1 cut(s)	1216
Hsp92II	CATG	7 cut(s)	285, 473, 658, 671, 1118, 1253, 2135
HspAI	GCGC	3 cut(s)	80, 161, 361
KspAI	GTTAAC	1 cut(s)	87
KspI	CCGCGG	1 cut(s)	1035
Kzo9I	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
LguI	GCTCTTC	1 cut(s)	1583
LmnI	GCTCC	7 cut(s)	32, 91, 178, 358, 1060, 1654, 1678
LweI	GCATC	8 cut(s)	68, 463, 773, 848, 1600, 1690, 1774, 2187
MabI	ACCWGGT	1 cut(s)	1406
MaeI	CTAG	5 cut(s)	407, 1172, 1421, 1533, 1853
MaeII	ACGT	1 cut(s)	1216
MaeIII	GTNAC	8 cut(s)	875, 955, 1642, 1843, 1879, 1888, 2011, 2044
MalI	GATC	8 cut(s)	28, 168, 294, 863, 1068, 1555, 1863, 1965
MboI	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
MboII	GAAGA	8 cut(s)	458, 687, 1020, 1331, 1570, 1586, 1624, 2186
MflI	RGATCY	4 cut(s)	292, 861, 1066, 1861
MhlI	GDGCHC	2 cut(s)	1002, 1273
MroXI	GAANNNNTTC	2 cut(s)	252, 2001
MseI	TTAA	7 cut(s)	86, 417, 684, 807, 1184, 1401, 1604
MslI	CAYNNNNRTG	3 cut(s)	353, 1284, 1895
MspA1I	CMGCKG	3 cut(s)	962, 1034, 1895
MspCI	CTTAAG	1 cut(s)	1603
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	5 cut(s)	15, 440, 953, 1408, 1729
MvaI	CCWGG	4 cut(s)	440, 953, 1408, 1729
MvnI	CGCG	2 cut(s)	80, 1034
MwoI	GCNNNNNNNGC	8 cut(s)	110, 145, 222, 248, 729, 897, 1687, 2068
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
NlaIII	CATG	7 cut(s)	285, 473, 658, 671, 1118, 1253, 2135
NlaIV	GGNNCC	2 cut(s)	1056, 1863
NmuCI	GTSAC	4 cut(s)	875, 955, 1843, 1888
NspI	RCATGY	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	1895
PaeR7I	CTCGAG	1 cut(s)	642
PagI	TCATGA	3 cut(s)	469, 1114, 1249
PaqCI	CACCTGC	1 cut(s)	382
PciI	ACATGT	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	1583
PdmI	GAANNNNTTC	2 cut(s)	252, 2001
PflMI	CCANNNNNTGG	1 cut(s)	1568
PfoI	TCCNGGA	1 cut(s)	1727
PscI	ACATGT	1 cut(s)	667
Psp6I	CCWGG	4 cut(s)	438, 951, 1406, 1727
PspEI	GGTNACC	1 cut(s)	2011
PspGI	CCWGG	4 cut(s)	438, 951, 1406, 1727
PspN4I	GGNNCC	2 cut(s)	1056, 1863
PspPI	GGNCC	1 cut(s)	1725
PstI	CTGCAG	3 cut(s)	435, 639, 2073
PstNI	CAGNNNCTG	1 cut(s)	2149
PsuI	RGATCY	4 cut(s)	292, 861, 1066, 1861
PvuII	CAGCTG	2 cut(s)	962, 1895
RsaI	GTAC	5 cut(s)	672, 705, 929, 2136, 2142
RsaNI	GTAC	5 cut(s)	671, 704, 928, 2135, 2141
RseI	CAYNNNNRTG	3 cut(s)	353, 1284, 1895
SacII	CCGCGG	1 cut(s)	1035
SapI	GCTCTTC	1 cut(s)	1583
SaqAI	TTAA	7 cut(s)	86, 417, 684, 807, 1184, 1401, 1604
Sau3AI	GATC	8 cut(s)	26, 166, 292, 861, 1066, 1553, 1861, 1963
Sau96I	GGNCC	1 cut(s)	1725
ScrFI	CCNGG	5 cut(s)	15, 440, 953, 1408, 1729
SduI	GDGCHC	2 cut(s)	1002, 1273
SexAI	ACCWGGT	1 cut(s)	1406
SfaNI	GCATC	8 cut(s)	68, 463, 773, 848, 1600, 1690, 1774, 2187
SfcI	CTRYAG	4 cut(s)	431, 635, 2069, 2240
Sfr274I	CTCGAG	1 cut(s)	642
Sfr303I	CCGCGG	1 cut(s)	1035
SgrBI	CCGCGG	1 cut(s)	1035
SinI	GGWCC	1 cut(s)	1725
SlaI	CTCGAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	3 cut(s)	353, 1284, 1895
SmlI	CTYRAG	3 cut(s)	642, 995, 1603
SmoI	CTYRAG	3 cut(s)	642, 995, 1603
SsiI	CCGC	8 cut(s)	104, 149, 532, 590, 1032, 1034, 1192, 1690
SspI	AATATT	2 cut(s)	1126, 2119
SspMI	CTAG	5 cut(s)	407, 1172, 1421, 1533, 1853
StyD4I	CCNGG	5 cut(s)	13, 438, 951, 1406, 1727
StyI	CCWWGG	6 cut(s)	42, 207, 648, 906, 1171, 1884
TaaI	ACNGT	5 cut(s)	144, 489, 1182, 2145, 2241
TaiI	ACGT	1 cut(s)	1219
TaqI	TCGA	5 cut(s)	169, 643, 1273, 1503, 1626
TaqII	GACCGA	2 cut(s)	498, 1831
TatI	WGTACW	3 cut(s)	670, 2134, 2140
TauI	GCSGC	2 cut(s)	107, 151
Tru1I	TTAA	7 cut(s)	86, 417, 684, 807, 1184, 1401, 1604
Tru9I	TTAA	7 cut(s)	86, 417, 684, 807, 1184, 1401, 1604
TscAI	CASTG	7 cut(s)	71, 613, 730, 819, 1230, 1486, 2023
TseFI	GTSAC	4 cut(s)	875, 955, 1843, 1888
Tsp45I	GTSAC	4 cut(s)	875, 955, 1843, 1888
TspGWI	ACGGA	5 cut(s)	104, 305, 770, 1256, 2101
TspRI	CASTG	7 cut(s)	71, 613, 730, 819, 1230, 1486, 2023
Van91I	CCANNNNNTGG	1 cut(s)	1568
Vha464I	CTTAAG	1 cut(s)	1603
VpaK11BI	GGWCC	1 cut(s)	1725
XagI	CCTNNNNNAGG	2 cut(s)	389, 2153
XapI	RAATTY	3 cut(s)	515, 623, 1233
XbaI	TCTAGA	2 cut(s)	406, 1420
XceI	RCATGY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1795
XhoI	CTCGAG	1 cut(s)	642
XmaJI	CCTAGG	1 cut(s)	1171
XmiI	GTMKAC	2 cut(s)	345, 1076
XmnI	GAANNNNTTC	2 cut(s)	252, 2001
XspI	CTAG	5 cut(s)	407, 1172, 1421, 1533, 1853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.