pycom15g19960

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
14278749 .. 14282159
3411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g19960.9

Sequence Viewer

Length: 1197 bp
ATGGCGGCAAGCAAGCCGAGCGTTCCGAAATCTGGAGCCATTTCCAGGGGCTACAACTTCGCATCTCACTGGGAACAGAAAACTCCGTTAACGGAGCAGCAGCAAGCAGCCATTGCAACGCTCTCGCATTCCGTCGCGGAGCGGCCATTCCCTCCCAATTTGGCACAGGACCGCACCACAGGCCACCAGAATGGCCTGACTGTCTCCACCAAGGACAGCTCTTTTGGCTCAGAACACTCAGCCGCCATTGAAGCTGTTCTTGTCAATACGAATCAGTTTTACAAATGGTTTACAGATCTCGAAGCGGCCTTGAAGTCGGAGACAGAGGAGAAGTATCGACACTATGTAGACACTTTGACAGAACGCATTCAGACATGTGATGGCATACTCGGTCAGGTCGATGACACCCTGGAGTTGTTTAATGAACTACAAGATCAGCATCAGGCAGTAGCAACAAAGACTAGAACTCTTCATGATGCATGCGACCGATTGTTAATAGAGAAGCAACGACTGATTGACTTTACGGAAGCACTCCGCAGTAAGCTCAACTACTTTGATGAATTGGAGAATATTACTACTAATTTTTATTCTCCAAACATGAATGTCCTACACGAGAACTTTCTCCCTCTTCTCAAACGCCTTGATGAGTGCATATCGTATGTTGAAAGCAATCCACAATATGCAGAATCCAGTGTTTACCTGCTCAAATTTCGACAATTGCAGTCTCGAGCCTTGGGAATGATTCGTTCTCATGTACTTTCAGTTCTCAAAGGTGCTTCTTCTCAGGTACAGGCAGCTATCCGGGGCAGTGGTGGCAATAACGCATCTGTTTCTGAGGGTGTAGAAGCATCCGTTATATATGTCCGTTTCAAGGCAGCAGCAAGTGAGCTTAAGCCAGTGCTGGAGGAAATTGAAAGCAGAGCATCAAGGAAAGAATATACTCAGATCCTTACAGAATGCCACAAACTATATTGTGAACAGAGACTTTCCTTGGTGAGAGGTATAGTACATCAACGAATATCTGAATTTGCCAAGAAAGAGGCCTTGCCATCATTGACTAGATCTGGATGTGCATATCTAATGCAGGTCTGCCAGCTAGAGCACCAACTGTTTGATCATTTTTTCCCATCTTCTGCAGAGGACGTTTCAAGTTTGGCTCAGAGCATTGATCGATCCTCTGTCCACATATTTATATGA

Protein Analysis

399

Amino Acids

44.77

Weight (kDa)

5.98

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 708, 1075
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 137
AciI CCGC 7 cut(s) 5, 137, 142, 172, 243, 305, 535
AclWI GGATC 2 cut(s) 940, 1167
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 707, 1025
AfaI GTAC 3 cut(s) 756, 789, 1008
AfiI CCNNNNNNNGG 3 cut(s) 32, 45, 871
AflII CTTAAG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 6 cut(s) 251, 313, 665, 871, 914, 1149
AjnI CCWGG 2 cut(s) 44, 408
AluBI AGCT 6 cut(s) 219, 254, 544, 797, 889, 1096
AluI AGCT 6 cut(s) 219, 254, 544, 797, 889, 1096
Alw21I GWGCWC 1 cut(s) 1104
Alw26I GTCTC 4 cut(s) 208, 314, 729, 976
AlwI GGATC 2 cut(s) 940, 1167
Ama87I CYCGRG 1 cut(s) 726
AoxI GGCC 5 cut(s) 143, 181, 193, 306, 1041
ApeKI GCWGC 6 cut(s) 97, 100, 107, 794, 875, 878
ApoI RAATTY 2 cut(s) 707, 1025
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp700I GAANNNNTTC 2 cut(s) 255, 366
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 1 cut(s) 1006
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 1 cut(s) 169
BauI CACGAG 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 1104
BbvI GCAGC 6 cut(s) 109, 112, 119, 806, 887, 890
BccI CCATC 3 cut(s) 374, 1057, 1135
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciT130I CCWGG 2 cut(s) 46, 410
BclI TGATCA 1 cut(s) 1114
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 3 cut(s) 462, 1059, 1097
BfmI CTRYAG 1 cut(s) 1134
BfrI CTTAAG 1 cut(s) 890
BfuAI ACCTGC 2 cut(s) 708, 1075
BglII AGATCT 2 cut(s) 295, 1061
Bme1390I CCNGG 3 cut(s) 46, 410, 803
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 3 cut(s) 46, 410, 803
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 6 cut(s) 71, 448, 466, 833, 857, 932
BmuI ACTGGG 1 cut(s) 79
BpmI CTGGAG 3 cut(s) 54, 431, 923
BpuMI CCSGG 1 cut(s) 803
Bsa29I ATCGAT 1 cut(s) 1171
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 6 cut(s) 45, 210, 408, 732, 802, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 45, 871
Bse1I ACTGG 3 cut(s) 74, 690, 896
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 46, 410
BseCI ATCGAT 1 cut(s) 1171
BseDI CCNNGG 6 cut(s) 45, 210, 408, 732, 802, 990
BseGI GGATG 2 cut(s) 848, 1073
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 32, 45, 871
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 6 cut(s) 243, 252, 797, 825, 956, 1172
BseNI ACTGG 3 cut(s) 74, 690, 896
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 6 cut(s) 109, 112, 119, 806, 887, 890
Bsh1236I CGCG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 5 cut(s) 145, 183, 195, 308, 1043
BshVI ATCGAT 1 cut(s) 1171
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 1104
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 1 cut(s) 802
BslI CCNNNNNNNGG 3 cut(s) 32, 45, 871
BsmAI GTCTC 4 cut(s) 208, 314, 729, 976
BsmI GAATGC 3 cut(s) 127, 366, 962
BsnI GGCC 5 cut(s) 145, 183, 195, 308, 1043
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 1104
Bsp143I GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
BspACI CCGC 7 cut(s) 5, 137, 142, 172, 243, 305, 535
BspANI GGCC 5 cut(s) 145, 183, 195, 308, 1043
BspCNI CTCAG 6 cut(s) 242, 251, 796, 826, 955, 1171
BspDI ATCGAT 1 cut(s) 1171
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 1138
BspMI ACCTGC 2 cut(s) 708, 1075
BspPI GGATC 2 cut(s) 940, 1167
BspTI CTTAAG 1 cut(s) 890
BsrBI CCGCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 3 cut(s) 74, 690, 896
BssECI CCNNGG 6 cut(s) 45, 210, 408, 732, 802, 990
BssMI GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 3 cut(s) 210, 732, 990
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 2 cut(s) 46, 410
Bst4CI ACNGT 2 cut(s) 202, 1110
Bst6I CTCTTC 2 cut(s) 474, 633
BstAFI CTTAAG 1 cut(s) 890
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 5 cut(s) 10, 14, 105, 481, 1094
BstDEI CTNAG 6 cut(s) 229, 238, 783, 834, 942, 1158
BstF5I GGATG 2 cut(s) 848, 1073
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 7 cut(s) 298, 436, 948, 1064, 1117, 1171, 1175
BstMAI GTCTC 4 cut(s) 208, 314, 729, 976
BstMBI GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 6 cut(s) 18, 113, 180, 225, 251, 813
BstNI CCWGG 2 cut(s) 46, 410
BstNSI RCATGY 2 cut(s) 378, 483
BstSCI CCNGG 3 cut(s) 44, 408, 801
BstSFI CTRYAG 1 cut(s) 1134
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 6 cut(s) 109, 112, 119, 806, 887, 890
BstX2I RGATCY 3 cut(s) 295, 945, 1061
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 3 cut(s) 295, 945, 1061
Bsu15I ATCGAT 1 cut(s) 1171
BsuRI GGCC 5 cut(s) 145, 183, 195, 308, 1043
BsuTUI ATCGAT 1 cut(s) 1171
BtsCI GGATG 2 cut(s) 848, 1073
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 4 cut(s) 67, 697, 814, 903
BveI ACCTGC 2 cut(s) 708, 1075
Cac8I GCNNGC 5 cut(s) 10, 14, 105, 481, 1094
CciI TCATGA 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 1171
Csp6I GTAC 3 cut(s) 755, 788, 1007
CviAII CATG 5 cut(s) 375, 473, 480, 598, 752
CviQI GTAC 3 cut(s) 755, 788, 1007
DdeI CTNAG 6 cut(s) 229, 238, 783, 834, 942, 1158
DpnI GATC 7 cut(s) 297, 435, 947, 1063, 1116, 1170, 1174
DpnII GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 474, 633
EarI CTCTTC 2 cut(s) 474, 633
Eco130I CCWWGG 3 cut(s) 210, 732, 990
Eco147I AGGCCT 1 cut(s) 1043
Eco47I GGWCC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 44, 408
EcoT14I CCWWGG 3 cut(s) 210, 732, 990
EcoT22I ATGCAT 1 cut(s) 481
ErhI CCWWGG 3 cut(s) 210, 732, 990
FaeI CATG 5 cut(s) 378, 476, 483, 601, 755
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 5 cut(s) 374, 472, 479, 597, 751
FbaI TGATCA 1 cut(s) 1114
FblI GTMKAC 1 cut(s) 348
FokI GGATG 2 cut(s) 835, 1080
FspBI CTAG 3 cut(s) 462, 1059, 1097
GsuI CTGGAG 3 cut(s) 54, 431, 923
HaeIII GGCC 5 cut(s) 145, 183, 195, 308, 1043
HapII CCGG 1 cut(s) 802
Hin1II CATG 5 cut(s) 378, 476, 483, 601, 755
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 271, 686, 742
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 1 cut(s) 802
HphI GGTGA 1 cut(s) 1006
Hpy166II GTNNAC 6 cut(s) 90, 291, 349, 697, 977, 1183
Hpy188I TCNGA 8 cut(s) 27, 232, 319, 372, 835, 945, 1024, 1161
Hpy188III TCNNGA 5 cut(s) 33, 299, 473, 726, 1065
Hpy8I GTNNAC 6 cut(s) 90, 291, 349, 697, 977, 1183
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 202, 1110
HpyCH4IV ACGT 1 cut(s) 1143
HpyCH4V TGCA 8 cut(s) 116, 479, 651, 683, 721, 1073, 1084, 1136
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 113, 180, 225, 251, 813
HpyF3I CTNAG 6 cut(s) 229, 238, 783, 834, 942, 1158
HpySE526I ACGT 1 cut(s) 1143
Hsp92II CATG 5 cut(s) 378, 476, 483, 601, 755
Ksp22I TGATCA 1 cut(s) 1114
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
LmnI GCTCC 3 cut(s) 35, 94, 139
Lsp1109I GCAGC 6 cut(s) 109, 112, 119, 806, 887, 890
LweI GCATC 6 cut(s) 71, 448, 466, 833, 857, 932
MaeI CTAG 3 cut(s) 462, 1059, 1097
MaeII ACGT 1 cut(s) 1143
MalI GATC 7 cut(s) 297, 435, 947, 1063, 1116, 1170, 1174
MbiI CCGCTC 1 cut(s) 142
MboI GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
MboII GAAGA 4 cut(s) 461, 620, 771, 1122
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 3 cut(s) 295, 945, 1061
MhlI GDGCHC 1 cut(s) 1104
MluCI AATT 7 cut(s) 157, 560, 580, 707, 716, 909, 1025
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 9 cut(s) 162, 319, 636, 829, 898, 992, 1033, 1132, 1186
Mph1103I ATGCAT 1 cut(s) 481
MroXI GAANNNNTTC 2 cut(s) 255, 366
MseI TTAA 4 cut(s) 89, 420, 494, 891
MslI CAYNNNNRTG 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 1 cut(s) 802
MspR9I CCNGG 3 cut(s) 46, 410, 803
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 3 cut(s) 127, 366, 962
MvaI CCWGG 2 cut(s) 46, 410
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 6 cut(s) 18, 113, 180, 225, 251, 813
NciI CCSGG 1 cut(s) 803
NdeII GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
NlaIII CATG 5 cut(s) 378, 476, 483, 601, 755
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 2 cut(s) 378, 483
PaeI GCATGC 1 cut(s) 483
PaeR7I CTCGAG 1 cut(s) 726
PagI TCATGA 1 cut(s) 472
PceI AGGCCT 1 cut(s) 1043
PciI ACATGT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 3 cut(s) 127, 366, 962
PdmI GAANNNNTTC 2 cut(s) 255, 366
PfeI GAWTC 3 cut(s) 271, 686, 742
PscI ACATGT 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 44, 408
PspGI CCWGG 2 cut(s) 44, 408
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 169
PsrI GAACNNNNNNTAC 2 cut(s) 747, 779
PstI CTGCAG 1 cut(s) 1138
PsuI RGATCY 3 cut(s) 295, 945, 1061
RsaI GTAC 3 cut(s) 756, 789, 1008
RsaNI GTAC 3 cut(s) 755, 788, 1007
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 4 cut(s) 89, 420, 494, 891
Sau3AI GATC 7 cut(s) 295, 433, 945, 1061, 1114, 1168, 1172
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 3 cut(s) 46, 410, 803
SduI GDGCHC 1 cut(s) 1104
SfaNI GCATC 6 cut(s) 71, 448, 466, 833, 857, 932
SfcI CTRYAG 1 cut(s) 1134
Sfr274I CTCGAG 1 cut(s) 726
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 726, 890
SmoI CTYRAG 2 cut(s) 726, 890
SphI GCATGC 1 cut(s) 483
Sse9I AATT 7 cut(s) 157, 560, 580, 707, 716, 909, 1025
SseBI AGGCCT 1 cut(s) 1043
SsiI CCGC 7 cut(s) 5, 137, 142, 172, 243, 305, 535
SspI AATATT 1 cut(s) 571
SspMI CTAG 3 cut(s) 462, 1059, 1097
StuI AGGCCT 1 cut(s) 1043
StyD4I CCNGG 3 cut(s) 44, 408, 801
StyI CCWWGG 3 cut(s) 210, 732, 990
TaaI ACNGT 2 cut(s) 202, 1110
TaiI ACGT 1 cut(s) 1146
TaqI TCGA 6 cut(s) 300, 337, 399, 712, 727, 1171
TaqII GACCGA 2 cut(s) 380, 501
TasI AATT 7 cut(s) 157, 560, 580, 707, 716, 909, 1025
TatI WGTACW 2 cut(s) 754, 1006
TauI GCSGC 4 cut(s) 8, 145, 245, 308
TfiI GAWTC 3 cut(s) 271, 686, 742
Tru1I TTAA 4 cut(s) 89, 420, 494, 891
Tru9I TTAA 4 cut(s) 89, 420, 494, 891
TscAI CASTG 4 cut(s) 74, 697, 814, 903
TseI GCWGC 6 cut(s) 97, 100, 107, 794, 875, 878
TspDTI ATGAA 4 cut(s) 438, 461, 573, 614
TspGWI ACGGA 6 cut(s) 75, 107, 121, 539, 841, 854
TspRI CASTG 4 cut(s) 74, 697, 814, 903
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 2 cut(s) 707, 1025
XceI RCATGY 2 cut(s) 378, 483
XhoI CTCGAG 1 cut(s) 726
XmiI GTMKAC 1 cut(s) 348
XmnI GAANNNNTTC 2 cut(s) 255, 366
XspI CTAG 3 cut(s) 462, 1059, 1097
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.