Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009509

Physical Location & Seq

Genomic Coordinates Forward (+)

6292175 .. 6294952

Gene Structure 2778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATTCCTGTGACTGTGATTGTGACCCCCATTTGCTGAGATCGCTCCTCGTCTTCAAGAACACAATCAACCACGAGTTGATCAGGAGCTTGCATGTGTACGGATTGGATGAGGGGAAGAGAAATGAGGTGGAGAGGGAGTTTGTGTTCAGAGAAAATGGGTTGTATGCGGAGCTGCCAGCTGAGCCGCTTCTGAGATTGATGAAATTTCCAGCTTCCCAAGTGCTCCAAGGGCATGTCAATGGCTGTTGGGCCTGCATTTTAGCATTTCATGAAAATTCACCTCCTGATTTTACATGCATTCCCTCTATACTTTCAGTCTCCAGAAATCCGAAGTTGAAGACAATTCCAAGATTGTCTAATGATCTTCAGATAATTTTTGAGTTGAGCTGCACAACGGATGACAAAAAATCATTGCAAAGGTCACAGCAGGAAACAAGCCAAGTGAGTAATGACAGTCACCACAAATCAAGGAGGTCGCCGATACTTGATCTGGATCTGAACTCTCTTCCTAGCTCCATCACAATGTCTGAATCATCCAAGGATCAAGAAAGTGGAAGAAGTTCACCAGGTATTACAGAGAAGAAGAAAAGGGCGCCAAGTGGACGCATAGCAAATATCGCTTTATCAGATCTGGCAAAGTATTTTGATCTACCAATTGTGGAAGCTTCGAGAAATCTGAATGTTGGACTCACCGTACTTAAAAAGAAATGCAGAGAATTTGGCATTCCACGGTGGCCACATAGGAAGATTAAATCGCTTGACAGTCTCATTCGTGATCTTCAGGAAGAGACAGAGATCCAACAAAAGGAGAACAAAGCCGCAGCCTTGGCAGTTCTAAAGAGGCAAAGGATGCTGGTGAGGGAAAGAGAAAGTATAGAGAGGCGACCCTTCTTGGAGATGAAGACTGAGACCAAAAGATTCCGGCAAGATGTTTTCAAGAGAAGGCACAGAGCTAGAGCTCTTAGAAGCCAGGGCCTATCAACCTCTTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWP-RK

Protein Analysis

333

Amino Acids

38.06

Weight (kDa)

9.46

Isoelectric Point (pI)

74.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35590 AT4G35590
fragaria_vesca	FvH4_1g10460 FvH4_1g10460
malus_domestica	MD02G1117800.v1.1 MD15G1232500.v1.1
prunus_persica	Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1
pyrus_communis	pycom02g09120 pycom15g20690
rosa_chinensis	RchiOBHm_Chr2g0097321
rosa_laevigata	RLG00000016717
rosa_roxburghii	Rroxscaffold_2G00144780
rosa_rugosa	Rorug02G0065800
rosa_samantha	Rh2AG112500 Rh2BG115200 Rh2CG117300 Rh2DG116500
rosa_wichuraiana	Rw2G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AciI	CCGC	3 cut(s)	170, 188, 822
AclWI	GGATC	3 cut(s)	504, 552, 793
AcoI	YGGCCR	1 cut(s)	737
AcsI	RAATTY	3 cut(s)	206, 277, 719
AcuI	CTGAAG	2 cut(s)	353, 767
AcyI	GRCGYC	1 cut(s)	596
AfaI	GTAC	2 cut(s)	101, 699
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	3 cut(s)	58, 340, 940
AjnI	CCWGG	2 cut(s)	568, 972
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	9 cut(s)	90, 175, 182, 215, 390, 516, 668, 956, 962
AluI	AGCT	9 cut(s)	90, 175, 182, 215, 390, 516, 668, 956, 962
Alw21I	GWGCWC	2 cut(s)	228, 964
Alw26I	GTCTC	4 cut(s)	325, 773, 785, 905
AlwI	GGATC	3 cut(s)	504, 552, 793
AoxI	GGCC	3 cut(s)	252, 737, 976
ApeKI	GCWGC	3 cut(s)	175, 390, 824
ApoI	RAATTY	3 cut(s)	206, 277, 719
Asp700I	GAANNNNTTC	1 cut(s)	562
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	2 cut(s)	252, 976
AsuHPI	GGTGA	5 cut(s)	273, 452, 558, 685, 871
BalI	TGGCCA	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	964
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	3 cut(s)	46, 347, 911
Bbv12I	GWGCWC	2 cut(s)	228, 964
BbvI	GCAGC	3 cut(s)	162, 377, 836
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	570, 974
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	4 cut(s)	325, 773, 785, 905
BfaI	CTAG	2 cut(s)	513, 957
BfoI	RGCGCY	1 cut(s)	599
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	5 cut(s)	176, 188, 391, 822, 825
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	5 cut(s)	177, 189, 392, 823, 826
Bme1390I	CCNGG	2 cut(s)	570, 974
BmgT120I	GGNCC	2 cut(s)	252, 976
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	570, 974
BmsI	GCATC	1 cut(s)	843
BpiI	GAAGAC	3 cut(s)	46, 347, 911
BpmI	CTGGAG	1 cut(s)	307
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	5 cut(s)	229, 540, 731, 828, 973
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 131, 155, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse3DI	GCAATG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	570, 974
BseDI	CCNNGG	5 cut(s)	229, 540, 731, 828, 973
BseGI	GGATG	4 cut(s)	115, 406, 536, 858
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	4 cut(s)	29, 174, 185, 900
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	162, 377, 836
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	3 cut(s)	254, 739, 978
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	228, 964
BsiSI	CCGG	1 cut(s)	925
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmAI	GTCTC	4 cut(s)	325, 773, 785, 905
BsmI	GAATGC	2 cut(s)	300, 726
BsnI	GGCC	3 cut(s)	254, 739, 978
Bso31I	GGTCTC	1 cut(s)	905
Bsp1286I	GDGCHC	2 cut(s)	228, 964
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	3 cut(s)	170, 188, 822
BspANI	GGCC	3 cut(s)	254, 739, 978
BspCNI	CTCAG	4 cut(s)	30, 175, 186, 901
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	597
BspPI	GGATC	3 cut(s)	504, 552, 793
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	413
BssECI	CCNNGG	5 cut(s)	229, 540, 731, 828, 973
BssNI	GRCGYC	1 cut(s)	596
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	229, 540, 828
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	570, 974
Bst4CI	ACNGT	5 cut(s)	17, 458, 697, 735, 767
Bst6I	CTCTTC	4 cut(s)	113, 513, 783, 994
BstACI	GRCGYC	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstC8I	GCNNGC	3 cut(s)	92, 180, 256
BstDEI	CTNAG	5 cut(s)	38, 183, 194, 909, 965
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	4 cut(s)	115, 406, 536, 858
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstMAI	GTCTC	4 cut(s)	325, 773, 785, 905
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 184, 232, 620, 830, 853
BstNI	CCWGG	2 cut(s)	570, 974
BstNSI	RCATGY	3 cut(s)	98, 239, 300
BstSCI	CCNGG	2 cut(s)	568, 972
BstV1I	GCAGC	3 cut(s)	162, 377, 836
BstV2I	GAAGAC	3 cut(s)	46, 347, 911
BstX2I	RGATCY	3 cut(s)	496, 631, 798
BstYI	RGATCY	3 cut(s)	496, 631, 798
BsuRI	GGCC	3 cut(s)	254, 739, 978
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	4 cut(s)	115, 406, 536, 858
Cac8I	GCNNGC	3 cut(s)	92, 180, 256
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	252, 976
CseI	GACGC	1 cut(s)	615
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	100, 698
CviAII	CATG	4 cut(s)	95, 236, 272, 297
CviQI	GTAC	2 cut(s)	100, 698
DdeI	CTNAG	5 cut(s)	38, 183, 194, 909, 965
DinI	GGCGCC	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	737
Eam1104I	CTCTTC	4 cut(s)	113, 513, 783, 994
EarI	CTCTTC	4 cut(s)	113, 513, 783, 994
Ecl136II	GAGCTC	1 cut(s)	962
Eco130I	CCWWGG	3 cut(s)	229, 540, 828
Eco24I	GRGCYC	1 cut(s)	964
Eco31I	GGTCTC	1 cut(s)	905
Eco53kI	GAGCTC	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	353, 767
EcoICRI	GAGCTC	1 cut(s)	962
EcoO109I	RGGNCCY	1 cut(s)	976
EcoRII	CCWGG	2 cut(s)	568, 972
EcoT14I	CCWWGG	3 cut(s)	229, 540, 828
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	964
EgeI	GGCGCC	1 cut(s)	597
EheI	GGCGCC	1 cut(s)	597
ErhI	CCWWGG	3 cut(s)	229, 540, 828
FaeI	CATG	4 cut(s)	98, 239, 275, 300
FaiI	YATR	9 cut(s)	96, 168, 237, 273, 298, 311, 611, 744, 878
FatI	CATG	4 cut(s)	94, 235, 271, 296
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	176, 188, 391, 822, 825
FokI	GGATG	4 cut(s)	122, 413, 523, 865
FriOI	GRGCYC	1 cut(s)	964
Fsp4HI	GCNGC	5 cut(s)	176, 188, 391, 822, 825
FspBI	CTAG	2 cut(s)	513, 957
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	5 cut(s)	176, 188, 391, 822, 825
GsuI	CTGGAG	1 cut(s)	307
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	254, 739, 978
HapII	CCGG	1 cut(s)	925
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	98, 239, 275, 300
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	4 cut(s)	5, 533, 690, 921
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	5 cut(s)	273, 452, 558, 685, 871
Hpy166II	GTNNAC	3 cut(s)	100, 566, 605
Hpy188I	TCNGA	8 cut(s)	152, 195, 333, 372, 501, 532, 631, 681
Hpy8I	GTNNAC	3 cut(s)	100, 566, 605
HpyAV	CCTTC	2 cut(s)	901, 939
HpyCH4III	ACNGT	5 cut(s)	17, 458, 697, 735, 767
HpyCH4V	TGCA	6 cut(s)	94, 258, 300, 393, 418, 714
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 184, 232, 620, 830, 853
HpyF3I	CTNAG	5 cut(s)	38, 183, 194, 909, 965
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	4 cut(s)	98, 239, 275, 300
HspAI	GCGC	1 cut(s)	596
KasI	GGCGCC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	81
LmnI	GCTCC	5 cut(s)	51, 87, 172, 231, 521
Lsp1109I	GCAGC	3 cut(s)	162, 377, 836
LweI	GCATC	1 cut(s)	843
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	2 cut(s)	513, 957
MaeIII	GTNAC	4 cut(s)	11, 23, 423, 458
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	3 cut(s)	496, 631, 798
MhlI	GDGCHC	2 cut(s)	228, 964
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	7 cut(s)	206, 277, 345, 375, 657, 719, 994
MluNI	TGGCCA	1 cut(s)	739
Mly113I	GGCGCC	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	2 cut(s)	667, 826
Mox20I	TGGCCA	1 cut(s)	739
Mph1103I	ATGCAT	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	562
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	3 cut(s)	702, 753, 997
MslI	CAYNNNNRTG	2 cut(s)	240, 524
Msp20I	TGGCCA	1 cut(s)	739
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	925
MspR9I	CCNGG	2 cut(s)	570, 974
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	2 cut(s)	300, 726
MvaI	CCWGG	2 cut(s)	570, 974
MwoI	GCNNNNNNNGC	6 cut(s)	43, 184, 232, 620, 830, 853
NarI	GGCGCC	1 cut(s)	596
NlaIII	CATG	4 cut(s)	98, 239, 275, 300
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	4 cut(s)	11, 23, 423, 458
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	3 cut(s)	98, 239, 300
PagI	TCATGA	1 cut(s)	271
PctI	GAATGC	2 cut(s)	300, 726
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	5, 533, 921
PkrI	GCNGC	5 cut(s)	177, 189, 392, 823, 826
PleI	GAGTC	1 cut(s)	684
PluTI	GGCGCC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	964
Psp6I	CCWGG	2 cut(s)	568, 972
PspGI	CCWGG	2 cut(s)	568, 972
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	252, 976
PsuI	RGATCY	3 cut(s)	496, 631, 798
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	101, 699
RsaNI	GTAC	2 cut(s)	100, 698
RseI	CAYNNNNRTG	2 cut(s)	240, 524
SacI	GAGCTC	1 cut(s)	964
SaqAI	TTAA	3 cut(s)	702, 753, 997
SatI	GCNGC	5 cut(s)	176, 188, 391, 822, 825
Sau96I	GGNCC	2 cut(s)	252, 976
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	2 cut(s)	570, 974
SduI	GDGCHC	2 cut(s)	228, 964
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	843
SfoI	GGCGCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	240, 524
Sse9I	AATT	7 cut(s)	206, 277, 345, 375, 657, 719, 994
SsiI	CCGC	3 cut(s)	170, 188, 822
SspDI	GGCGCC	1 cut(s)	595
SspMI	CTAG	2 cut(s)	513, 957
SstI	GAGCTC	1 cut(s)	964
StyD4I	CCNGG	2 cut(s)	568, 972
StyI	CCWWGG	3 cut(s)	229, 540, 828
TaaI	ACNGT	5 cut(s)	17, 458, 697, 735, 767
TaqI	TCGA	1 cut(s)	671
TasI	AATT	7 cut(s)	206, 277, 345, 375, 657, 719, 994
TauI	GCSGC	2 cut(s)	190, 824
TfiI	GAWTC	3 cut(s)	5, 533, 921
Tru1I	TTAA	3 cut(s)	702, 753, 997
Tru9I	TTAA	3 cut(s)	702, 753, 997
TseFI	GTSAC	4 cut(s)	11, 23, 423, 458
TseI	GCWGC	3 cut(s)	175, 390, 824
Tsp45I	GTSAC	4 cut(s)	11, 23, 423, 458
TspDTI	ATGAA	4 cut(s)	218, 260, 288, 917
TspGWI	ACGGA	2 cut(s)	117, 413
XapI	RAATTY	3 cut(s)	206, 277, 719
XceI	RCATGY	3 cut(s)	98, 239, 300
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	2 cut(s)	513, 957
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.