Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009509

Physical Location & Seq

Genomic Coordinates Forward (+)

14830205 .. 14833144

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20690.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATTCCTGTGACTGTGACCCCCATTTGCTGAGATCTCTCCTGGTCTTCAAGAACACCATCAACCAGGAGTTGATCAGGAGCTTGCATGTGTACGGATTGGATGAGGGGAAGAGAAATGAGGTGGAGAGGGAGTTTGTGTTCAGAGAAAATGGGTTGTATGTGGAGCTGTCAGCTGAGCCGGTTCTGAGACTGATGAAATTTCCGGCTTCCCAAGTGCTCCAAGGGCATGTCAATGGCTGCTGGGTCTGCATTTTAGCATTTCATGAAAATTCACCTCCTGATTTTACATGCATTCCCTCTGTTCTTTCAGTCTCCAGAAATCCAAAGTTGAAGACAATTCCAAGATTGTCTAATGATCGATCTGCCCCCACTGTTCAGATGATTTTTGAGTTGAGTTGCAAAACAGATGACAAAAAATCATTGCAAAGGTCACGGGAGGAAACGAGCCAAGGGAGTAATGACAGTAACCACAAATCAAGGAGGTGGCCGATACTTGATCTGGATCTGAACTCTCTTCCTAGCCCCGTCACAATGTCTGAATCATCTGAGGATCAAGAAAGTGGAAGAAGTTCACCAGGTATTACAGAGAAGAAAAGAAGGGCACCAAGTGGACGCATAGCAAGTATCTCTTTGTCAGATCTGGCAAAGTATTTTGATCTACCAATTGTGGAAGCTTCGAGAAATTTGAATGTTGGACTCACAGTACTTAAGAAGAAATGCAGAGAATTTGGTATTCCTCGGTGGCCACATAGGAAGATTAAATCGCTTGACAGTCTCATTCGTGATCTTCAGGAAGAGACGGAGATCCAACAGAAGGAGAACAAAGCCGCAGCCTTGGCGGTTCTAAAGAGGCAAAGAATGCTGGAGAGGGAAAGAGAAAGTATAGAGAGGAGACCCTTCTTGGAGATGAAGACCGAGACCAAAAGATTCCGGCAAGATGTTTTCAAGAGACGGCACAGAGCTAGAGCTCTTAGAAGCCAGGGCCTGTCTACGTCTGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

336

Amino Acids

38.48

Weight (kDa)

9.52

Isoelectric Point (pI)

71.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35590 AT4G35590
fragaria_vesca	FvH4_1g10460 FvH4_1g10460
malus_domestica	MD02G1117800.v1.1 MD15G1232500.v1.1
prunus_persica	Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1
pyrus_communis	pycom02g09120 pycom15g20690
rosa_chinensis	RchiOBHm_Chr2g0097321
rosa_laevigata	RLG00000016717
rosa_roxburghii	Rroxscaffold_2G00144780
rosa_rugosa	Rorug02G0065800
rosa_samantha	Rh2AG112500 Rh2BG115200 Rh2CG117300 Rh2DG116500
rosa_wichuraiana	Rw2G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	992
AciI	CCGC	2 cut(s)	831, 842
AclWI	GGATC	3 cut(s)	513, 561, 802
AcoI	YGGCCR	2 cut(s)	488, 746
AcsI	RAATTY	4 cut(s)	200, 271, 685, 728
AcuI	CTGAAG	1 cut(s)	776
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	2 cut(s)	95, 708
AfiI	CCNNNNNNNGG	1 cut(s)	817
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	4 cut(s)	52, 334, 691, 949
AjnI	CCWGG	4 cut(s)	42, 66, 577, 981
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	6 cut(s)	84, 169, 176, 677, 965, 971
AluI	AGCT	6 cut(s)	84, 169, 176, 677, 965, 971
Alw21I	GWGCWC	2 cut(s)	222, 973
Alw26I	GTCTC	7 cut(s)	184, 319, 782, 794, 889, 914, 946
AlwI	GGATC	3 cut(s)	513, 561, 802
AlwNI	CAGNNNCTG	1 cut(s)	988
AoxI	GGCC	3 cut(s)	488, 746, 985
ApeKI	GCWGC	2 cut(s)	240, 833
ApoI	RAATTY	4 cut(s)	200, 271, 685, 728
Asp700I	GAANNNNTTC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	985
AsuHPI	GGTGA	2 cut(s)	267, 567
BaeGI	GKGCMC	1 cut(s)	607
BalI	TGGCCA	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	973
BbsI	GAAGAC	3 cut(s)	40, 341, 920
Bbv12I	GWGCWC	2 cut(s)	222, 973
BbvI	GCAGC	2 cut(s)	227, 845
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	971
BciT130I	CCWGG	4 cut(s)	44, 68, 579, 983
BclI	TGATCA	1 cut(s)	75
BcoDI	GTCTC	7 cut(s)	184, 319, 782, 794, 889, 914, 946
BfaI	CTAG	2 cut(s)	522, 966
BfrI	CTTAAG	1 cut(s)	710
BglII	AGATCT	2 cut(s)	35, 640
BisI	GCNGC	3 cut(s)	241, 831, 834
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	3 cut(s)	242, 832, 835
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	4 cut(s)	44, 68, 579, 983
BmgT120I	GGNCC	1 cut(s)	985
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	4 cut(s)	44, 68, 579, 983
BpiI	GAAGAC	3 cut(s)	40, 341, 920
BpmI	CTGGAG	2 cut(s)	301, 887
Bpu1102I	GCTNAGC	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	504
BsaI	GGTCTC	2 cut(s)	889, 914
BsaJI	CCNNGG	5 cut(s)	223, 451, 740, 837, 982
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 125, 149, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse118I	RCCGGY	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	422
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	4 cut(s)	44, 68, 579, 983
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	5 cut(s)	223, 451, 740, 837, 982
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	4 cut(s)	23, 168, 179, 540
BseRI	GAGGAG	1 cut(s)	907
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	2 cut(s)	227, 845
BseYI	CCCAGC	1 cut(s)	243
BshFI	GGCC	3 cut(s)	490, 748, 987
BshNI	GGYRCC	1 cut(s)	604
BshVI	ATCGAT	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	222, 973
BsiSI	CCGG	3 cut(s)	182, 206, 934
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	7 cut(s)	184, 319, 782, 794, 889, 914, 946
BsmBI	CGTCTC	2 cut(s)	794, 946
BsmI	GAATGC	2 cut(s)	294, 867
BsnI	GGCC	3 cut(s)	490, 748, 987
Bso31I	GGTCTC	2 cut(s)	889, 914
Bsp1286I	GDGCHC	3 cut(s)	222, 607, 973
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	831, 842
BspANI	GGCC	3 cut(s)	490, 748, 987
BspCNI	CTCAG	4 cut(s)	24, 169, 180, 541
BspDI	ATCGAT	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	606
BspPI	GGATC	3 cut(s)	513, 561, 802
BspT107I	GGYRCC	1 cut(s)	604
BspTI	CTTAAG	1 cut(s)	710
BspTNI	GGTCTC	2 cut(s)	889, 914
BsrDI	GCAATG	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	5 cut(s)	223, 451, 740, 837, 982
BssT1I	CCWWGG	3 cut(s)	223, 451, 837
Bst2UI	CCWGG	4 cut(s)	44, 68, 579, 983
Bst4CI	ACNGT	5 cut(s)	17, 376, 467, 706, 776
Bst6I	CTCTTC	3 cut(s)	107, 522, 792
BstAFI	CTTAAG	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	5 cut(s)	32, 177, 188, 549, 974
BstF5I	GGATG	1 cut(s)	109
BstMAI	GTCTC	7 cut(s)	184, 319, 782, 794, 889, 914, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 249, 839, 862
BstNI	CCWGG	4 cut(s)	44, 68, 579, 983
BstNSI	RCATGY	3 cut(s)	92, 233, 294
BstSCI	CCNGG	4 cut(s)	42, 66, 577, 981
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	227, 845
BstV2I	GAAGAC	3 cut(s)	40, 341, 920
BstX2I	RGATCY	4 cut(s)	35, 505, 640, 807
BstYI	RGATCY	4 cut(s)	35, 505, 640, 807
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	490, 748, 987
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	988
CciI	TCATGA	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	985
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	624
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	94, 707
CviAII	CATG	4 cut(s)	89, 230, 266, 291
CviQI	GTAC	2 cut(s)	94, 707
DdeI	CTNAG	5 cut(s)	32, 177, 188, 549, 974
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	2 cut(s)	488, 746
Eam1104I	CTCTTC	3 cut(s)	107, 522, 792
EarI	CTCTTC	3 cut(s)	107, 522, 792
Ecl136II	GAGCTC	1 cut(s)	971
Eco130I	CCWWGG	3 cut(s)	223, 451, 837
Eco24I	GRGCYC	1 cut(s)	973
Eco31I	GGTCTC	2 cut(s)	889, 914
Eco53kI	GAGCTC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	985
EcoRII	CCWGG	4 cut(s)	42, 66, 577, 981
EcoT14I	CCWWGG	3 cut(s)	223, 451, 837
EcoT22I	ATGCAT	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	973
ErhI	CCWWGG	3 cut(s)	223, 451, 837
Esp3I	CGTCTC	2 cut(s)	794, 946
FaeI	CATG	4 cut(s)	92, 233, 269, 294
FaiI	YATR	8 cut(s)	90, 162, 231, 267, 292, 620, 753, 887
FalI	AAGNNNNNCTT	2 cut(s)	616, 648
FatI	CATG	4 cut(s)	88, 229, 265, 290
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	992
Fnu4HI	GCNGC	3 cut(s)	241, 831, 834
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	973
Fsp4HI	GCNGC	3 cut(s)	241, 831, 834
FspBI	CTAG	2 cut(s)	522, 966
GluI	GCNGC	3 cut(s)	241, 831, 834
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	2 cut(s)	301, 887
HaeIII	GGCC	3 cut(s)	490, 748, 987
HapII	CCGG	3 cut(s)	182, 206, 934
HgaI	GACGC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	92, 233, 269, 294
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	4 cut(s)	5, 542, 699, 930
HpaII	CCGG	3 cut(s)	182, 206, 934
HphI	GGTGA	2 cut(s)	267, 567
Hpy166II	GTNNAC	4 cut(s)	94, 575, 614, 993
Hpy188I	TCNGA	7 cut(s)	146, 189, 381, 510, 541, 550, 640
Hpy8I	GTNNAC	4 cut(s)	94, 575, 614, 993
HpyAV	CCTTC	3 cut(s)	594, 811, 910
HpyCH4III	ACNGT	5 cut(s)	17, 376, 467, 706, 776
HpyCH4IV	ACGT	1 cut(s)	995
HpyCH4V	TGCA	6 cut(s)	88, 252, 294, 402, 427, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 249, 839, 862
HpyF3I	CTNAG	5 cut(s)	32, 177, 188, 549, 974
HpySE526I	ACGT	1 cut(s)	995
Hsp92II	CATG	4 cut(s)	92, 233, 269, 294
Ksp22I	TGATCA	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	81, 166, 225
Lsp1109I	GCAGC	2 cut(s)	227, 845
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	2 cut(s)	522, 966
MaeII	ACGT	1 cut(s)	995
MaeIII	GTNAC	5 cut(s)	11, 17, 432, 467, 529
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	4 cut(s)	35, 505, 640, 807
MhlI	GDGCHC	3 cut(s)	222, 607, 973
MlsI	TGGCCA	1 cut(s)	748
MluCI	AATT	7 cut(s)	200, 271, 339, 666, 685, 728, 1003
MluNI	TGGCCA	1 cut(s)	748
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	2 cut(s)	676, 835
Mox20I	TGGCCA	1 cut(s)	748
Mph1103I	ATGCAT	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	748
MseI	TTAA	3 cut(s)	711, 762, 1006
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	748
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	3 cut(s)	182, 206, 934
MspR9I	CCNGG	4 cut(s)	44, 68, 579, 983
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	294, 867
MvaI	CCWGG	4 cut(s)	44, 68, 579, 983
MwoI	GCNNNNNNNGC	4 cut(s)	226, 249, 839, 862
NlaIII	CATG	4 cut(s)	92, 233, 269, 294
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	4 cut(s)	11, 17, 432, 529
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	3 cut(s)	92, 233, 294
PagI	TCATGA	1 cut(s)	265
PctI	GAATGC	2 cut(s)	294, 867
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	5, 542, 930
PkrI	GCNGC	3 cut(s)	242, 832, 835
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	973
Psp6I	CCWGG	4 cut(s)	42, 66, 577, 981
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	4 cut(s)	42, 66, 577, 981
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	1 cut(s)	985
PstNI	CAGNNNCTG	1 cut(s)	988
PsuI	RGATCY	4 cut(s)	35, 505, 640, 807
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	95, 708
RsaNI	GTAC	2 cut(s)	94, 707
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	973
SaqAI	TTAA	3 cut(s)	711, 762, 1006
SatI	GCNGC	3 cut(s)	241, 831, 834
Sau96I	GGNCC	1 cut(s)	985
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	4 cut(s)	44, 68, 579, 983
SduI	GDGCHC	3 cut(s)	222, 607, 973
SexAI	ACCWGGT	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	7 cut(s)	200, 271, 339, 666, 685, 728, 1003
SsiI	CCGC	2 cut(s)	831, 842
SspMI	CTAG	2 cut(s)	522, 966
SstI	GAGCTC	1 cut(s)	973
StyD4I	CCNGG	4 cut(s)	42, 66, 577, 981
StyI	CCWWGG	3 cut(s)	223, 451, 837
TaaI	ACNGT	5 cut(s)	17, 376, 467, 706, 776
TaiI	ACGT	1 cut(s)	998
TaqI	TCGA	2 cut(s)	361, 680
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	7 cut(s)	200, 271, 339, 666, 685, 728, 1003
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	3 cut(s)	5, 542, 930
Tru1I	TTAA	3 cut(s)	711, 762, 1006
Tru9I	TTAA	3 cut(s)	711, 762, 1006
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	4 cut(s)	11, 17, 432, 529
TseI	GCWGC	2 cut(s)	240, 833
Tsp45I	GTSAC	4 cut(s)	11, 17, 432, 529
TspDTI	ATGAA	4 cut(s)	212, 254, 282, 926
TspGWI	ACGGA	2 cut(s)	111, 818
TspRI	CASTG	1 cut(s)	379
Vha464I	CTTAAG	1 cut(s)	710
XapI	RAATTY	4 cut(s)	200, 271, 685, 728
XceI	RCATGY	3 cut(s)	92, 233, 294
XmiI	GTMKAC	1 cut(s)	992
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	2 cut(s)	522, 966
ZrmI	AGTACT	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.