Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009509

Physical Location & Seq

Genomic Coordinates Forward (+)

10313515 .. 10316865

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG117300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAATTCCGGGTTTCACAAGTGCTTGAAGGCTATGTTAATGGCTGCTGGGTCTGCATTTTAGCTTTTCATGCCAATCGTTCTCCTAATTTCACATGCATTCCTTCTATTCTCTCTGTTTCAAGAAATCCTCAGTTAAAGTTGATCCCAAATTTAGCTAATGATCTTCAAATGGTTGTCGAGACAACCTGCATAAAAGCTGAGAAAGAACCATTGCAGAAGTCGGATGAGGAAACAAGCCAAGGGAATGATGAGAATCACTGTCAACTAAGAAGAAGTTTGCCTATGCTTGATCTGGATCTTAATCGTCCTCCTTGTCCTGCCACAATGTCTGAATCATCTGATGGTCAAGAAAGTGGAAGACAATCACCCGGTTTGATAGAGAAGAAGAATAGAAGAGCAGCAAGTGACCGCATAGCAAAGATCACTTTACCAGATCTGGTGAAGTATTTTGATATCCCTATTGTGGAAGCTTCAAGAAGTCTGAATGTTGGACTTACAGTACTGAAAAAGAAATGTAGAGAGTTTGGTATTCCTCGTTGGCCACATAGGAAGATAAAATCGCTTGACAGCCTCATTCGTGATCTTCAGGAAGAGACGGAGTTCCAACAGAAGGAGAACAAGGCTGCAGCCTTAGCAGTTGCAAAGAGGCAAAGGATGTTGGAGAGTGAAAAAGAAAGCATAGAGAGGAGACCCTTCTTGGATATGAAGATCGAGACCAAGAGGTTCAGGCAAGATGTTTTCAAGAGAAGGCATAGAGCCAGAGTTCTTAGAAGCCAGGGCCTATCACTCACTGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWP-RK

Protein Analysis

267

Amino Acids

30.61

Weight (kDa)

9.58

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWP-RK	PF02042	141 - 189	3.1e-22	RWP-RK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35590 AT4G35590
fragaria_vesca	FvH4_1g10460 FvH4_1g10460
malus_domestica	MD02G1117800.v1.1 MD15G1232500.v1.1
prunus_persica	Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1 Prupe.7G181600_v2.0.a1
pyrus_communis	pycom02g09120 pycom15g20690
rosa_chinensis	RchiOBHm_Chr2g0097321
rosa_laevigata	RLG00000016717
rosa_roxburghii	Rroxscaffold_2G00144780
rosa_rugosa	Rorug02G0065800
rosa_samantha	Rh2AG112500 Rh2BG115200 Rh2CG117300 Rh2DG116500
rosa_wichuraiana	Rw2G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	2 cut(s)	139, 306
AcoI	YGGCCR	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	5, 151
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	466, 613
AgsI	TTSAA	5 cut(s)	29, 123, 170, 477, 745
AjnI	CCWGG	1 cut(s)	777
AluBI	AGCT	4 cut(s)	65, 158, 200, 473
AluI	AGCT	4 cut(s)	65, 158, 200, 473
Alw26I	GTCTC	4 cut(s)	176, 590, 685, 710
AlwI	GGATC	2 cut(s)	139, 306
AoxI	GGCC	2 cut(s)	542, 781
ApeKI	GCWGC	4 cut(s)	45, 401, 626, 629
ApoI	RAATTY	2 cut(s)	5, 151
AspS9I	GGNCC	1 cut(s)	781
AsuC2I	CCSGG	2 cut(s)	11, 372
AsuHPI	GGTGA	2 cut(s)	360, 454
BalI	TGGCCA	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	4 cut(s)	32, 413, 613, 641
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	779
BcnI	CCSGG	2 cut(s)	11, 372
BcoDI	GTCTC	4 cut(s)	176, 590, 685, 710
BfmI	CTRYAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	4 cut(s)	46, 402, 627, 630
BlsI	GCNGC	4 cut(s)	47, 403, 628, 631
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	3 cut(s)	11, 372, 779
BmgT120I	GGNCC	1 cut(s)	781
BmrFI	CCNGG	3 cut(s)	11, 372, 779
BpiI	GAAGAC	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	634
BpuMI	CCSGG	2 cut(s)	11, 372
BsaBI	GATNNNNATC	3 cut(s)	255, 297, 303
BsaI	GGTCTC	2 cut(s)	685, 710
BsaJI	CCNNGG	2 cut(s)	241, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 613
Bse1I	ACTGG	1 cut(s)	799
Bse3DI	GCAATG	1 cut(s)	212
Bse8I	GATNNNNATC	3 cut(s)	255, 297, 303
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	241, 778
BseGI	GGATG	2 cut(s)	232, 663
BseJI	GATNNNNATC	3 cut(s)	255, 297, 303
BseLI	CCNNNNNNNGG	2 cut(s)	466, 613
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	146, 192
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	4 cut(s)	32, 413, 613, 641
BseYI	CCCAGC	1 cut(s)	48
BshFI	GGCC	2 cut(s)	544, 783
BsiSI	CCGG	2 cut(s)	10, 372
BslI	CCNNNNNNNGG	2 cut(s)	466, 613
BsmAI	GTCTC	4 cut(s)	176, 590, 685, 710
BsmBI	CGTCTC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	544, 783
Bso31I	GGTCTC	2 cut(s)	685, 710
Bsp143I	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	2 cut(s)	544, 783
BspCNI	CTCAG	2 cut(s)	145, 193
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	139, 306
BspQI	GCTCTTC	1 cut(s)	391
BspTNI	GGTCTC	2 cut(s)	685, 710
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	2 cut(s)	241, 778
BssMI	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	263, 502
Bst6I	CTCTTC	2 cut(s)	391, 588
BstDEI	CTNAG	5 cut(s)	132, 201, 269, 634, 770
BstF5I	GGATG	2 cut(s)	232, 663
BstKTI	GATC	8 cut(s)	147, 166, 295, 301, 426, 439, 586, 714
BstMAI	GTCTC	4 cut(s)	176, 590, 685, 710
BstMBI	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 71, 635
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	3 cut(s)	9, 370, 777
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	32, 413, 613, 641
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	2 cut(s)	298, 436
BstYI	RGATCY	2 cut(s)	298, 436
BsuRI	GGCC	2 cut(s)	544, 783
BtsCI	GGATG	2 cut(s)	232, 663
BtsIMutI	CAGTG	2 cut(s)	259, 792
BveI	ACCTGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	2 cut(s)	71, 96
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	5 cut(s)	132, 201, 269, 634, 770
DpnI	GATC	8 cut(s)	146, 165, 294, 300, 425, 438, 585, 713
DpnII	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
EaeI	YGGCCR	1 cut(s)	542
Eam1104I	CTCTTC	2 cut(s)	391, 588
EarI	CTCTTC	2 cut(s)	391, 588
Eco130I	CCWWGG	1 cut(s)	241
Eco31I	GGTCTC	2 cut(s)	685, 710
Eco32I	GATATC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	777
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	2 cut(s)	74, 99
FatI	CATG	2 cut(s)	70, 95
Fnu4HI	GCNGC	4 cut(s)	46, 402, 627, 630
FokI	GGATG	2 cut(s)	239, 670
Fsp4HI	GCNGC	4 cut(s)	46, 402, 627, 630
GluI	GCNGC	4 cut(s)	46, 402, 627, 630
GsaI	CCCAGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	544, 783
HapII	CCGG	2 cut(s)	10, 372
Hin1II	CATG	2 cut(s)	74, 99
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	2 cut(s)	256, 335
HpaII	CCGG	2 cut(s)	10, 372
HphI	GGTGA	2 cut(s)	360, 454
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	226, 334, 343, 486
Hpy188III	TCNNGA	9 cut(s)	123, 181, 296, 350, 477, 581, 590, 715, 745
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	5 cut(s)	23, 114, 607, 706, 744
HpyCH4III	ACNGT	2 cut(s)	263, 502
HpyCH4V	TGCA	6 cut(s)	57, 99, 192, 217, 629, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 71, 635
HpyF3I	CTNAG	5 cut(s)	132, 201, 269, 634, 770
Hsp92II	CATG	2 cut(s)	74, 99
Kzo9I	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
LguI	GCTCTTC	1 cut(s)	391
Lsp1109I	GCAGC	4 cut(s)	32, 413, 613, 641
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	8 cut(s)	146, 165, 294, 300, 425, 438, 585, 713
MboI	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
MflI	RGATCY	2 cut(s)	298, 436
MlsI	TGGCCA	1 cut(s)	544
MluCI	AATT	4 cut(s)	5, 88, 151, 799
MluNI	TGGCCA	1 cut(s)	544
MmeI	TCCRAC	4 cut(s)	204, 472, 631, 642
MnlI	CCTC	8 cut(s)	141, 223, 321, 546, 584, 642, 681, 717
Mox20I	TGGCCA	1 cut(s)	544
Mph1103I	ATGCAT	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	544
MseI	TTAA	4 cut(s)	39, 137, 303, 802
Msp20I	TGGCCA	1 cut(s)	544
MspI	CCGG	2 cut(s)	10, 372
MspR9I	CCNGG	3 cut(s)	11, 372, 779
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	779
MwoI	GCNNNNNNNGC	3 cut(s)	54, 71, 635
NciI	CCSGG	2 cut(s)	11, 372
NdeII	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
NlaIII	CATG	2 cut(s)	74, 99
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	256, 335
PkrI	GCNGC	4 cut(s)	47, 403, 628, 631
Psp6I	CCWGG	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	777
PspPI	GGNCC	1 cut(s)	781
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	298, 436
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	4 cut(s)	39, 137, 303, 802
SatI	GCNGC	4 cut(s)	46, 402, 627, 630
Sau3AI	GATC	8 cut(s)	144, 163, 292, 298, 423, 436, 583, 711
Sau96I	GGNCC	1 cut(s)	781
ScaI	AGTACT	1 cut(s)	504
ScrFI	CCNGG	3 cut(s)	11, 372, 779
SetI	ASST	6 cut(s)	67, 160, 191, 202, 475, 728
SfcI	CTRYAG	1 cut(s)	627
Sse9I	AATT	4 cut(s)	5, 88, 151, 799
SsiI	CCGC	1 cut(s)	412
StyD4I	CCNGG	3 cut(s)	9, 370, 777
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	263, 502
TaqI	TCGA	2 cut(s)	180, 714
TasI	AATT	4 cut(s)	5, 88, 151, 799
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	256, 335
Tru1I	TTAA	4 cut(s)	39, 137, 303, 802
Tru9I	TTAA	4 cut(s)	39, 137, 303, 802
TscAI	CASTG	2 cut(s)	266, 799
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	4 cut(s)	45, 401, 626, 629
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	17, 59, 722
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	2 cut(s)	266, 799
XapI	RAATTY	2 cut(s)	5, 151
XceI	RCATGY	1 cut(s)	99
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.