pycom02g12160

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013883
Physical Location & Seq
Reverse (-)
8740263 .. 8742640
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1233 bp
ATGGATGTCGGAAGACAGGCATTATTATATGAAGAGGAGAAATGCCACTCGGATTCTTTATTGAGAAATGCAAACGAGACTTTCAAAAGTAGAATTCCCTATAAACTCTCTGATACCACTTTCCTCGTGAGACAGCCACAAGAATACTGCTTCCCTCTTCTCTTCCCTCCCCTTCCCACTGCAGCTCGCCATACCCCCTCCCTCTCTATCTCCCACGAGAAAACGGAATCTAGAGGGAGAAAGCTCAGAAAGGAAGGAGGTGGTCGACCAGGAAAAGCTAAAATGACAGGCGGTGGGTCGTCGGGGAGGTTGCCAACATGGAAAGAGAGAGAGAACAACAAGAGGAGAGAGAGGAGGAGGAGAGCCATTGCTGCCAAGGTATATTCTGGGCTCAGAGCTCAGGGAAGCTACAAGCTTCCCAAGCACTGCGATAACAACGAGGTCTTGAAGGCTCTCTGTGCTGAAGCTGGCTGGGTTGTGGAAGAAGATGGCACCACCTACCGCAAGGGATGCAAGCCATCTCTAATGGAAATTGCAGGCACTCCAACAAATATGAGTGCGTGTTCTTCTATTCTACAAAGTCCACAATCCTCAGCTTTCCCAAGTCCCGTACCATCTTACCATGCCAGTCCATCCTCCTCCTCTTTTCCAAGTCCTGCTCGTTTCGATGGAAACCCCTCCTCTTACCTTCTTCCGTTCCTGCGCAACATAGCTTCCATTCCCACAAATCTTCCTCCTCTTAGAATATCCAATAGTGCTCCTGTAACTCCACCTCTTTCTTCCCCAATCTCTAGAGGTTCAAAGAGAAAACCTGATTGGGACTCCCTTACTAATGGTTGCATAAACTCCCTGCACCACCCTCTTTTTGCAGCCTCTGCCCCTTCAAGTCCTACGCGTCGCCACCATCTTACACCTGCCACAATACCAGAATGTGATGAGTCTGATGCTTCCACTGTGGACTCCGGTCGTTGGGTCAGTTTTCAGACAGGGGCGCCCTCAGTTGCTCCGCCTTCGCCCACATTTAATCTTATGAAACCTGTGGCTGAGCAGAATGTTCTTAAGAATGCTGTTGAAGCCCATGTGGGGATGGGATGGGGGAGCACTGCAGAGAGGGGACGAGGCTCGGAGTTTGAGTTTGAGAGTGCCACAGTGAAAGCTTGGGAGGGTGAGAGAATACATGAGGTAGGAGCGGATGATCTGGAGCTCACACTTGGAAATGGGAAGAACCATTAA

Protein Analysis

411

Amino Acids

44.71

Weight (kDa)

9.27

Isoelectric Point (pI)

66.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 100 - 224 1.1e-63 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36780
fragaria_vesca FvH4_1g14040
malus_domestica MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica Prupe.7G149000_v2.0.a1
pyrus_communis pycom02g12160 pycom15g23310
rosa_chinensis RchiOBHm_Chr2g0102631
rosa_laevigata RLG00000017158
rosa_multiflora Rmu_sc0003852.1_g000007
rosa_roxburghii Rroxscaffold_2G00140430
rosa_rugosa Rorug02G0108300
rosa_samantha Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana Rw2G012180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 922
Acc16I TGCGCA 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 491, 991
AccBSI CCGCTC 1 cut(s) 1190
AccI GTMKAC 1 cut(s) 265
AccII CGCG 1 cut(s) 895
AciI CCGC 4 cut(s) 291, 502, 1007, 1190
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 992
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 969, 1083
AflII CTTAAG 1 cut(s) 1058
AflIII ACRYGT 1 cut(s) 893
AgsI TTSAA 5 cut(s) 85, 448, 801, 885, 1073
AjnI CCWGG 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
Alw21I GWGCWC 4 cut(s) 400, 760, 1103, 1206
Alw26I GTCTC 2 cut(s) 71, 124
AlwNI CAGNNNCTG 1 cut(s) 875
ApeKI GCWGC 3 cut(s) 182, 371, 869
ApoI RAATTY 1 cut(s) 93
AspLEI GCGC 2 cut(s) 705, 994
AsuHPI GGTGA 1 cut(s) 1178
BanI GGYRCC 2 cut(s) 491, 991
BanII GRGCYC 3 cut(s) 393, 400, 1206
BauI CACGAG 2 cut(s) 125, 215
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 4 cut(s) 400, 760, 1103, 1206
BbvCI CCTCAGC 1 cut(s) 592
BbvI GCAGC 3 cut(s) 194, 358, 881
BccI CCATC 8 cut(s) 482, 526, 622, 640, 662, 912, 1081, 1086
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 71, 124
BfaI CTAG 2 cut(s) 231, 792
BfmI CTRYAG 2 cut(s) 180, 1104
BfoI RGCGCY 1 cut(s) 995
BfrI CTTAAG 1 cut(s) 1058
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 3 cut(s) 183, 372, 870
BlpI GCTNAGC 1 cut(s) 1044
BlsI GCNGC 3 cut(s) 184, 373, 871
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 493, 993
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 500, 934
BoxI GACNNNNGTC 1 cut(s) 963
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 1220
Bpu10I CCTNAGC 2 cut(s) 399, 592
Bpu1102I GCTNAGC 1 cut(s) 1044
BsaHI GRCGYC 1 cut(s) 992
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 1 cut(s) 962
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 2 cut(s) 969, 1083
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 6 cut(s) 10, 515, 632, 1092, 1097, 1198
BseLI CCNNNNNNNGG 2 cut(s) 969, 1083
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 6 cut(s) 259, 406, 413, 606, 1011, 1035
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 9 cut(s) 50, 358, 367, 370, 373, 628, 631, 670, 726
BseXI GCAGC 3 cut(s) 194, 358, 881
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 895
Bsh1285I CGRYCG 1 cut(s) 967
BshNI GGYRCC 2 cut(s) 491, 991
BsiEI CGRYCG 1 cut(s) 967
BsiHKAI GWGCWC 4 cut(s) 400, 760, 1103, 1206
BsiSI CCGG 1 cut(s) 963
BslFI GGGAC 3 cut(s) 591, 833, 1128
BslI CCNNNNNNNGG 2 cut(s) 969, 1083
BsmAI GTCTC 2 cut(s) 71, 124
BsmFI GGGAC 3 cut(s) 591, 833, 1128
BsmI GAATGC 1 cut(s) 1069
Bsp1286I GDGCHC 5 cut(s) 393, 400, 760, 1103, 1206
Bsp143I GATC 1 cut(s) 1195
Bsp1720I GCTNAGC 1 cut(s) 1044
BspACI CCGC 4 cut(s) 291, 502, 1007, 1190
BspCNI CTCAG 6 cut(s) 258, 405, 412, 605, 1010, 1036
BspFNI CGCG 1 cut(s) 895
BspLI GGNNCC 2 cut(s) 493, 993
BspMAI CTGCAG 2 cut(s) 184, 1108
BspMI ACCTGC 1 cut(s) 922
BspT107I GGYRCC 2 cut(s) 491, 991
BspTI CTTAAG 1 cut(s) 1058
BsrBI CCGCTC 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 1 cut(s) 1195
BssNI GRCGYC 1 cut(s) 992
BssSI CACGAG 2 cut(s) 125, 215
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 2 cut(s) 125, 215
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 955, 1150
Bst6I CTCTTC 3 cut(s) 27, 162, 167
BstACI GRCGYC 1 cut(s) 992
BstAFI CTTAAG 1 cut(s) 1058
BstAPI GCANNNNNTGC 2 cut(s) 510, 875
BstC8I GCNNGC 4 cut(s) 187, 469, 515, 538
BstDEI CTNAG 7 cut(s) 245, 392, 399, 592, 740, 997, 1044
BstF5I GGATG 6 cut(s) 10, 515, 632, 1092, 1097, 1198
BstFNI CGCG 1 cut(s) 895
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 2 cut(s) 705, 994
BstKTI GATC 1 cut(s) 1198
BstMAI GTCTC 2 cut(s) 71, 124
BstMBI GATC 1 cut(s) 1195
BstMCI CGRYCG 1 cut(s) 967
BstMWI GCNNNNNNNGC 6 cut(s) 371, 421, 458, 510, 875, 1073
BstNI CCWGG 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 963
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 2 cut(s) 180, 1104
BstUI CGCG 1 cut(s) 895
BstV1I GCAGC 3 cut(s) 194, 358, 881
BstV2I GAAGAC 1 cut(s) 19
BtsCI GGATG 6 cut(s) 10, 515, 632, 1092, 1097, 1198
BtsI GCAGTG 3 cut(s) 177, 424, 1101
BtsIMutI CAGTG 5 cut(s) 177, 424, 951, 1101, 1155
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 4 cut(s) 187, 469, 515, 538
CaiI CAGNNNCTG 1 cut(s) 875
CfoI GCGC 2 cut(s) 705, 994
CseI GACGC 1 cut(s) 884
Csp6I GTAC 1 cut(s) 611
CviAII CATG 4 cut(s) 318, 623, 1079, 1178
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 7 cut(s) 245, 392, 399, 592, 740, 997, 1044
DinI GGCGCC 1 cut(s) 993
DpnI GATC 1 cut(s) 1197
DpnII GATC 1 cut(s) 1195
Eam1104I CTCTTC 3 cut(s) 27, 162, 167
EarI CTCTTC 3 cut(s) 27, 162, 167
EciI GGCGGA 1 cut(s) 996
Ecl136II GAGCTC 2 cut(s) 398, 1204
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 3 cut(s) 393, 400, 1206
Eco53kI GAGCTC 2 cut(s) 398, 1204
Eco57I CTGAAG 1 cut(s) 483
EcoICRI GAGCTC 2 cut(s) 398, 1204
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 3 cut(s) 393, 400, 1206
EgeI GGCGCC 1 cut(s) 993
EheI GGCGCC 1 cut(s) 993
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 4 cut(s) 321, 626, 1082, 1181
FaqI GGGAC 3 cut(s) 591, 833, 1128
FatI CATG 4 cut(s) 317, 622, 1078, 1177
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 183, 372, 870
FokI GGATG 6 cut(s) 17, 522, 619, 1099, 1104, 1205
FriOI GRGCYC 3 cut(s) 393, 400, 1206
Fsp4HI GCNGC 3 cut(s) 183, 372, 870
FspBI CTAG 2 cut(s) 231, 792
FspI TGCGCA 1 cut(s) 704
GlaI GCGC 2 cut(s) 704, 993
GluI GCNGC 3 cut(s) 183, 372, 870
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 1220
HaeII RGCGCY 1 cut(s) 995
HapII CCGG 1 cut(s) 963
HgaI GACGC 1 cut(s) 884
HhaI GCGC 2 cut(s) 705, 994
Hin1I GRCGYC 1 cut(s) 992
Hin1II CATG 4 cut(s) 321, 626, 1082, 1181
Hin6I GCGC 2 cut(s) 703, 992
HinP1I GCGC 2 cut(s) 703, 992
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HindIII AAGCTT 2 cut(s) 413, 1155
HinfI GANTC 5 cut(s) 53, 227, 821, 938, 959
HpaII CCGG 1 cut(s) 963
HphI GGTGA 1 cut(s) 1178
Hpy166II GTNNAC 3 cut(s) 266, 584, 958
Hpy188I TCNGA 8 cut(s) 11, 52, 112, 248, 395, 943, 984, 1126
Hpy188III TCNNGA 5 cut(s) 127, 231, 445, 792, 1199
Hpy8I GTNNAC 3 cut(s) 266, 584, 958
Hpy99I CGWCG 2 cut(s) 304, 900
HpyAV CCTTC 6 cut(s) 182, 248, 442, 698, 891, 1020
HpyCH4III ACNGT 2 cut(s) 955, 1150
HpyCH4V TGCA 8 cut(s) 71, 182, 513, 536, 840, 853, 869, 1106
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 421, 458, 510, 875, 1073
HpyF3I CTNAG 7 cut(s) 245, 392, 399, 592, 740, 997, 1044
Hsp92I GRCGYC 1 cut(s) 992
Hsp92II CATG 4 cut(s) 321, 626, 1082, 1181
HspAI GCGC 2 cut(s) 703, 992
KasI GGCGCC 1 cut(s) 991
Kzo9I GATC 1 cut(s) 1195
LmnI GCTCC 5 cut(s) 763, 1009, 1098, 1187, 1201
Lsp1109I GCAGC 3 cut(s) 194, 358, 881
LweI GCATC 2 cut(s) 500, 934
MaeI CTAG 2 cut(s) 231, 792
MaeIII GTNAC 1 cut(s) 763
MalI GATC 1 cut(s) 1197
MbiI CCGCTC 1 cut(s) 1190
MboI GATC 1 cut(s) 1195
MhlI GDGCHC 5 cut(s) 393, 400, 760, 1103, 1206
MluCI AATT 2 cut(s) 93, 531
MluI ACGCGT 1 cut(s) 893
Mly113I GGCGCC 1 cut(s) 992
MlyI GAGTC 3 cut(s) 815, 947, 953
MmeI TCCRAC 1 cut(s) 569
MseI TTAA 3 cut(s) 1023, 1059, 1231
MspCI CTTAAG 1 cut(s) 1058
MspI CCGG 1 cut(s) 963
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 1069
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 895
MwoI GCNNNNNNNGC 6 cut(s) 371, 421, 458, 510, 875, 1073
NarI GGCGCC 1 cut(s) 992
NdeII GATC 1 cut(s) 1195
NlaIII CATG 4 cut(s) 321, 626, 1082, 1181
NlaIV GGNNCC 2 cut(s) 493, 993
NsbI TGCGCA 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 922
PctI GAATGC 1 cut(s) 1069
PfeI GAWTC 2 cut(s) 53, 227
PkrI GCNGC 3 cut(s) 184, 373, 871
PleI GAGTC 3 cut(s) 815, 946, 953
PluTI GGCGCC 1 cut(s) 995
PpsI GAGTC 3 cut(s) 815, 946, 953
PshAI GACNNNNGTC 1 cut(s) 963
Psp124BI GAGCTC 2 cut(s) 400, 1206
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 493, 993
PstI CTGCAG 2 cut(s) 184, 1108
PstNI CAGNNNCTG 1 cut(s) 875
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
SacI GAGCTC 2 cut(s) 400, 1206
SalI GTCGAC 1 cut(s) 264
SaqAI TTAA 3 cut(s) 1023, 1059, 1231
SatI GCNGC 3 cut(s) 183, 372, 870
Sau3AI GATC 1 cut(s) 1195
SchI GAGTC 3 cut(s) 815, 947, 953
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 5 cut(s) 393, 400, 760, 1103, 1206
SfaNI GCATC 2 cut(s) 500, 934
SfcI CTRYAG 2 cut(s) 180, 1104
SfoI GGCGCC 1 cut(s) 993
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 2 cut(s) 93, 531
SsiI CCGC 4 cut(s) 291, 502, 1007, 1190
SspDI GGCGCC 1 cut(s) 991
SspMI CTAG 2 cut(s) 231, 792
SstI GAGCTC 2 cut(s) 400, 1206
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 955, 1150
TaqI TCGA 2 cut(s) 265, 666
TasI AATT 2 cut(s) 93, 531
TfiI GAWTC 2 cut(s) 53, 227
Tru1I TTAA 3 cut(s) 1023, 1059, 1231
Tru9I TTAA 3 cut(s) 1023, 1059, 1231
TscAI CASTG 5 cut(s) 184, 431, 958, 1108, 1155
TseI GCWGC 3 cut(s) 182, 371, 869
TspDTI ATGAA 2 cut(s) 45, 1046
TspGWI ACGGA 2 cut(s) 239, 684
TspRI CASTG 5 cut(s) 184, 431, 958, 1108, 1155
Vha464I CTTAAG 1 cut(s) 1058
XapI RAATTY 1 cut(s) 93
XbaI TCTAGA 2 cut(s) 230, 791
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 2 cut(s) 231, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.