Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003992

Physical Location & Seq

Genomic Coordinates Reverse (-)

11607582 .. 11610709

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGAAGTTCATGAAACTTGGATCGAAACCGGATTTCTTTCAGACCGATGGAGACAATATAAGATATGTCGCAACTGAGTTGGCAACTGATGTAGCTGTTAATGTCGGAGATGTGAAGTTTTATTTGCACAAGTTTCCTCTTCTGTCCAAGAGTGCACGCCTGCAGAAACTGGTCGCAACCACAAATGAAAACAGCGATGAAATCCACATCCATGATATTCCTGGCGGACCTGCTGCTTTTGAAATATGTGCCAAGTTCTGTTATGGCATGACTGTCACTCTCAATGCATACAATGTGGTTGCAACTCGATGCGCAGCAGAGTACCTGGAGATGTACGAAACTATTGATAAAGGAAACCTAGTCTACAAGGTTGAAGTGTTCTTAAACTCTAGCATCTTCCGGAGCTGGAAAGACTTGATTATTGTTCTTCAGACTACGAGGTCTCTTCTTCCATGGTCCGAGGAAGTTAAGGTGGTGAGCCACTGCCTCGATTCCATAGCTTCCAAGGCTAGCATTGATACTTCCAAGGTGGAGTGGTCATATACATATAACCACAAAAAACTACCGTCTAATAATGGGGATGATTCACACTGGAATGGTGTGGCAAAACAACAGATGGTTCCAAAAGACTGGTGGGTGGAAGACCTCTGTGGGCTTCAACTTGATTTATACAAGCGGGTGATAACAATAATTAAGACCAAAGGAAGAATATCTGGTGATGTAATAGGGGAAGCCTTAAAGGCATATACCACCAGAAGGTTGTCAGGTTTTAGCAAGGGTATGATTCAGGGGGATGTTCTAAAGAATAAATCATTGGTGGAGACTGTAATCCCCTTACTTCCTGCAGGCAGTGTTCCTTGCAGTTTCTTACTTAAATTGTTAAAAGCGGCAAGACTGTTGGAATGTGGAGAGGTCGAAAAATGTGAGTTAATTCGCAAAATTGGCCAGCAGCTTGACGAGGCTACTGTTTCTGATCTTTTGATTCAAGCCCCAACTGATGAAGCAATAAAATATGAAGTTGATATAGTGCAGAGCTTAATTGAAGAGTTTGTGACACACGATCGAAGTGCTCAGACTAAGATCGATCCTTCAATGGAAAGTGAATTCCAGGAGATTAGAAGTCCCAGGTTATCGGATTCTTCCAAGGTGAAGGTGGCAAAGCTGGTTGACGGCTATCTTACTGAGATTTCACGTGATCCCAACTTACCCGTGTCAAAGTTTGTCCATCTTGCTGAAATGGTATCAAGCTTCTCGAGACCAACTCATGATGGTCTTTACCGCGCCATTGACATGTATCTAAGGGAACACCCGGGGATCAGCAAGGGTGAGAGGAAGAGAATGTGCAAATTAATGGACTGCAGGAAGTTGTCAGTAGAAGCCTGCATGCACGCTGTGCAAAATGAGCGGCTGCCCTTAAGAGTTGTTGTGCAGGTCCTTTTCTTTGAACAGATTAGGGCTTCGGCATCCGGTGGCAACAGTACACCTGATCTACAAGGCTCCATCAGGGCCTTGCTCCCTGGTGGGTCTCATGGGAGCTCAAGGTCTACAACCAACACAGAAGACGACTGGGATGCTGTGCCGACAGCAGAAGAAATCAAGGGTTTAAAATGTGAGATTTCTACTCTAAGGTTAGGCGAAGTGAATGGAGGAGTTGGAGTTGGAAGTGATAGAAATGGGAACCCCGGTGCTTCAAAAAATCTTGATAAAGTTCCATCCGGTAAAGTGAAAGGTATGTTCATGTCGAAAAAGATATTTTCTAAGCTGTGGTCAAGCAAAGAAAGGAGTGGTGAAATCAGTAGTTCTAATACATCAGAGAGCCCTGGTTCTTCTAGCAATGCAGAAGAAACAAAATTCACCCGTTCGAGGAGTAGGAGGAATTCGGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0007275 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009791 GO:0009908 GO:0009958 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0090567

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

630

Amino Acids

69.76

Weight (kDa)

8.28

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23050 AT2G23050 AT4G37590 AT5G67440 AT5G67440 AT5G67440
fragaria_vesca	FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440
malus_domestica	MD02G1183500.v1.1 MD15G1295200.v1.1
prunus_persica	Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1
pyrus_communis	pycom02g14920 pycom15g25820
rosa_chinensis	RchiOBHm_Chr2g0107651
rosa_laevigata	RLG00000017605
rosa_roxburghii	Rroxscaffold_2G00136090
rosa_rugosa	Rorug02G0146100 Rorug02G0146100
rosa_samantha	Rh2AG195900 Rh2BG208300 Rh2CG201000 Rh2DG203400 Rh6AG399700
rosa_wichuraiana	Rw2G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	313
Acc36I	ACCTGC	2 cut(s)	238, 1420
AccBSI	CCGCTC	1 cut(s)	1405
AccI	GTMKAC	2 cut(s)	363, 1544
AccII	CGCG	1 cut(s)	1281
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	5 cut(s)	225, 676, 887, 1279, 1405
AclWI	GGATC	4 cut(s)	28, 1079, 1190, 1322
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	3 cut(s)	1103, 1850, 1876
AcuI	CTGAAG	1 cut(s)	413
AcvI	CACGTG	1 cut(s)	1193
AdeI	CACNNNGTG	1 cut(s)	1393
AfaI	GTAC	3 cut(s)	323, 335, 1480
AfiI	CCNNNNNNNGG	2 cut(s)	756, 1863
AflII	CTTAAG	1 cut(s)	1414
AflIII	ACRYGT	1 cut(s)	1290
AgsI	TTSAA	8 cut(s)	242, 374, 659, 986, 1043, 1092, 1445, 1692
AjnI	CCWGG	6 cut(s)	220, 324, 1107, 1124, 1516, 1819
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AluBI	AGCT	9 cut(s)	95, 405, 500, 952, 1035, 1162, 1248, 1536, 1762
AluI	AGCT	9 cut(s)	95, 405, 500, 952, 1035, 1162, 1248, 1536, 1762
Alw21I	GWGCWC	3 cut(s)	157, 1072, 1538
Alw26I	GTCTC	5 cut(s)	45, 447, 815, 1249, 1530
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	4 cut(s)	28, 1079, 1190, 1322
AlwNI	CAGNNNCTG	1 cut(s)	169
Ama87I	CYCGRG	2 cut(s)	1252, 1309
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	2 cut(s)	943, 1506
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	233, 314, 949, 1408
ApoI	RAATTY	3 cut(s)	1103, 1850, 1876
AseI	ATTAAT	1 cut(s)	1349
AspLEI	GCGC	2 cut(s)	314, 1283
AspS9I	GGNCC	4 cut(s)	227, 456, 1432, 1506
AsuC2I	CCSGG	3 cut(s)	1310, 1311, 1683
AsuHPI	GGTGA	7 cut(s)	487, 691, 728, 1159, 1337, 1799, 1846
AsuNHI	GCTAGC	1 cut(s)	509
AvaI	CYCGRG	2 cut(s)	1252, 1309
AvaII	GGWCC	3 cut(s)	227, 456, 1432
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	945
BanII	GRGCYC	2 cut(s)	1538, 1820
BbrPI	CACGTG	1 cut(s)	1193
BbsI	GAAGAC	2 cut(s)	648, 1566
Bbv12I	GWGCWC	3 cut(s)	157, 1072, 1538
BbvI	GCAGC	4 cut(s)	220, 326, 961, 1395
BccI	CCATC	6 cut(s)	41, 610, 1233, 1262, 1508, 1720
BceAI	ACGGC	1 cut(s)	1186
BcgI	CGANNNNNNTGC	4 cut(s)	1049, 1083, 1553, 1587
BciT130I	CCWGG	6 cut(s)	222, 326, 1109, 1126, 1518, 1821
BcnI	CCSGG	3 cut(s)	1310, 1311, 1683
BcoDI	GTCTC	5 cut(s)	45, 447, 815, 1249, 1530
BfaI	CTAG	4 cut(s)	359, 390, 510, 1830
BfmI	CTRYAG	3 cut(s)	161, 843, 1357
BfrI	CTTAAG	1 cut(s)	1414
BfuAI	ACCTGC	2 cut(s)	238, 1420
BglI	GCCNNNNNGGC	1 cut(s)	740
BisI	GCNGC	6 cut(s)	234, 315, 888, 950, 1406, 1409
BlsI	GCNGC	6 cut(s)	235, 316, 889, 951, 1407, 1410
Bme1390I	CCNGG	9 cut(s)	222, 326, 1109, 1126, 1310, 1311, 1518, 1683, 1821
Bme18I	GGWCC	3 cut(s)	227, 456, 1432
BmeT110I	CYCGRG	2 cut(s)	1252, 1309
BmgT120I	GGNCC	4 cut(s)	227, 456, 1432, 1506
BmiI	GGNNCC	3 cut(s)	621, 1498, 1679
BmrFI	CCNGG	9 cut(s)	222, 326, 1109, 1126, 1310, 1311, 1518, 1683, 1821
BmrI	ACTGGG	1 cut(s)	1576
BmsI	GCATC	4 cut(s)	299, 402, 1472, 1561
BmtI	GCTAGC	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	1576
BpiI	GAAGAC	2 cut(s)	648, 1566
BplI	GAGNNNNNCTC	2 cut(s)	1246, 1278
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	1522
BpuMI	CCSGG	3 cut(s)	1310, 1311, 1683
Bsa29I	ATCGAT	1 cut(s)	1083
BsaAI	YACGTR	1 cut(s)	1193
BsaI	GGTCTC	3 cut(s)	447, 1249, 1530
BsaWI	WCCGGW	4 cut(s)	28, 399, 1466, 1715
BsaXI	ACNNNNNCTCC	2 cut(s)	1641, 1671
Bsc4I	CCNNNNNNNGG	2 cut(s)	756, 1863
Bse1I	ACTGG	4 cut(s)	174, 596, 635, 1571
Bse3DI	GCAATG	1 cut(s)	1840
BseAI	TCCGGA	1 cut(s)	399
BseBI	CCWGG	6 cut(s)	222, 326, 1109, 1126, 1518, 1821
BseCI	ATCGAT	1 cut(s)	1083
BseGI	GGATG	6 cut(s)	207, 586, 799, 1463, 1576, 1712
BseLI	CCNNNNNNNGG	2 cut(s)	756, 1863
BseMI	GCAATG	1 cut(s)	1840
BseMII	CTCAG	3 cut(s)	66, 1085, 1173
BseNI	ACTGG	4 cut(s)	174, 596, 635, 1571
BseRI	GAGGAG	2 cut(s)	1662, 1879
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	4 cut(s)	220, 326, 961, 1395
BsgI	GTGCAG	2 cut(s)	1049, 1448
Bsh1236I	CGCG	1 cut(s)	1281
Bsh1285I	CGRYCG	1 cut(s)	1063
BshFI	GGCC	2 cut(s)	945, 1508
BshVI	ATCGAT	1 cut(s)	1083
BsiEI	CGRYCG	1 cut(s)	1063
BsiHKAI	GWGCWC	3 cut(s)	157, 1072, 1538
BsiHKCI	CYCGRG	2 cut(s)	1252, 1309
BsiSI	CCGG	6 cut(s)	29, 400, 1310, 1467, 1683, 1716
BslFI	GGGAC	1 cut(s)	1107
BslI	CCNNNNNNNGG	2 cut(s)	756, 1863
BsmAI	GTCTC	5 cut(s)	45, 447, 815, 1249, 1530
BsmFI	GGGAC	1 cut(s)	1107
BsnI	GGCC	2 cut(s)	945, 1508
Bso31I	GGTCTC	3 cut(s)	447, 1249, 1530
BsoBI	CYCGRG	2 cut(s)	1252, 1309
Bsp1286I	GDGCHC	4 cut(s)	157, 1072, 1538, 1820
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	5 cut(s)	225, 676, 887, 1279, 1405
BspANI	GGCC	2 cut(s)	945, 1508
BspCNI	CTCAG	3 cut(s)	67, 1084, 1174
BspDI	ATCGAT	1 cut(s)	1083
BspEI	TCCGGA	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	1281
BspHI	TCATGA	2 cut(s)	9, 1264
BspLI	GGNNCC	3 cut(s)	621, 1498, 1679
BspMAI	CTGCAG	3 cut(s)	165, 847, 1361
BspMI	ACCTGC	2 cut(s)	238, 1420
BspOI	GCTAGC	1 cut(s)	513
BspPI	GGATC	4 cut(s)	28, 1079, 1190, 1322
BspTI	CTTAAG	1 cut(s)	1414
BspTNI	GGTCTC	3 cut(s)	447, 1249, 1530
BsrBI	CCGCTC	1 cut(s)	1405
BsrDI	GCAATG	1 cut(s)	1840
BsrI	ACTGG	4 cut(s)	174, 596, 635, 1571
BssMI	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
BssT1I	CCWWGG	4 cut(s)	452, 504, 525, 1143
Bst2UI	CCWGG	6 cut(s)	222, 326, 1109, 1126, 1518, 1821
Bst4CI	ACNGT	6 cut(s)	274, 567, 826, 897, 967, 1478
Bst6I	CTCTTC	4 cut(s)	144, 450, 1038, 1328
BstAFI	CTTAAG	1 cut(s)	1414
BstAPI	GCANNNNNTGC	1 cut(s)	1393
BstBAI	YACGTR	1 cut(s)	1193
BstC8I	GCNNGC	8 cut(s)	157, 161, 511, 847, 947, 1381, 1385, 1389
BstDEI	CTNAG	8 cut(s)	75, 1071, 1077, 1182, 1298, 1625, 1758, 1887
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	6 cut(s)	207, 586, 799, 1463, 1576, 1712
BstFNI	CGCG	1 cut(s)	1281
BstHHI	GCGC	2 cut(s)	314, 1283
BstKTI	GATC	8 cut(s)	23, 976, 1063, 1083, 1087, 1198, 1317, 1489
BstMAI	GTCTC	5 cut(s)	45, 447, 815, 1249, 1530
BstMBI	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
BstMCI	CGRYCG	1 cut(s)	1063
BstMWI	GCNNNNNNNGC	5 cut(s)	506, 740, 942, 1393, 1402
BstNI	CCWGG	6 cut(s)	222, 326, 1109, 1126, 1518, 1821
BstNSI	RCATGY	2 cut(s)	1294, 1387
BstSCI	CCNGG	9 cut(s)	220, 324, 1107, 1124, 1308, 1309, 1516, 1681, 1819
BstSFI	CTRYAG	3 cut(s)	161, 843, 1357
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	1281
BstV1I	GCAGC	4 cut(s)	220, 326, 961, 1395
BstV2I	GAAGAC	2 cut(s)	648, 1566
BstXI	CCANNNNNNTGG	1 cut(s)	630
Bsu15I	ATCGAT	1 cut(s)	1083
BsuRI	GGCC	2 cut(s)	945, 1508
BsuTUI	ATCGAT	1 cut(s)	1083
BtgI	CCRYGG	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	6 cut(s)	207, 586, 799, 1463, 1576, 1712
BtsI	GCAGTG	2 cut(s)	481, 856
BtsIMutI	CAGTG	3 cut(s)	481, 589, 856
BveI	ACCTGC	2 cut(s)	238, 1420
Cac8I	GCNNGC	8 cut(s)	157, 161, 511, 847, 947, 1381, 1385, 1389
CaiI	CAGNNNCTG	1 cut(s)	169
CciI	TCATGA	2 cut(s)	9, 1264
CfoI	GCGC	2 cut(s)	314, 1283
Cfr13I	GGNCC	4 cut(s)	227, 456, 1432, 1506
Cfr9I	CCCGGG	1 cut(s)	1309
ClaI	ATCGAT	1 cut(s)	1083
Csp6I	GTAC	3 cut(s)	322, 334, 1479
CviAII	CATG	9 cut(s)	10, 212, 268, 453, 1265, 1291, 1384, 1529, 1738
CviQI	GTAC	3 cut(s)	322, 334, 1479
DdeI	CTNAG	8 cut(s)	75, 1071, 1077, 1182, 1298, 1625, 1758, 1887
DpnI	GATC	8 cut(s)	22, 975, 1062, 1082, 1086, 1197, 1316, 1488
DpnII	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
DraI	TTTAAA	1 cut(s)	1605
DraIII	CACNNNGTG	1 cut(s)	1393
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	4 cut(s)	144, 450, 1038, 1328
EarI	CTCTTC	4 cut(s)	144, 450, 1038, 1328
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	1536
Eco130I	CCWWGG	4 cut(s)	452, 504, 525, 1143
Eco24I	GRGCYC	2 cut(s)	1538, 1820
Eco31I	GGTCTC	3 cut(s)	447, 1249, 1530
Eco47I	GGWCC	3 cut(s)	227, 456, 1432
Eco53kI	GAGCTC	1 cut(s)	1536
Eco57I	CTGAAG	1 cut(s)	413
Eco72I	CACGTG	1 cut(s)	1193
Eco88I	CYCGRG	2 cut(s)	1252, 1309
EcoICRI	GAGCTC	1 cut(s)	1536
EcoO109I	RGGNCCY	2 cut(s)	1432, 1506
EcoRI	GAATTC	2 cut(s)	1103, 1876
EcoRII	CCWGG	6 cut(s)	220, 324, 1107, 1124, 1516, 1819
EcoT14I	CCWWGG	4 cut(s)	452, 504, 525, 1143
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	2 cut(s)	1538, 1820
ErhI	CCWWGG	4 cut(s)	452, 504, 525, 1143
FaeI	CATG	9 cut(s)	13, 215, 271, 456, 1268, 1294, 1387, 1532, 1741
FaqI	GGGAC	1 cut(s)	1107
FatI	CATG	9 cut(s)	9, 211, 267, 452, 1264, 1290, 1383, 1528, 1737
FauI	CCCGC	1 cut(s)	669
FblI	GTMKAC	2 cut(s)	363, 1544
Fnu4HI	GCNGC	6 cut(s)	234, 315, 888, 950, 1406, 1409
FokI	GGATG	6 cut(s)	194, 593, 806, 1450, 1583, 1699
FriOI	GRGCYC	2 cut(s)	1538, 1820
Fsp4HI	GCNGC	6 cut(s)	234, 315, 888, 950, 1406, 1409
FspBI	CTAG	4 cut(s)	359, 390, 510, 1830
FspI	TGCGCA	1 cut(s)	313
GlaI	GCGC	2 cut(s)	313, 1282
GluI	GCNGC	6 cut(s)	234, 315, 888, 950, 1406, 1409
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	945, 1508
HapII	CCGG	6 cut(s)	29, 400, 1310, 1467, 1683, 1716
HhaI	GCGC	2 cut(s)	314, 1283
Hin1II	CATG	9 cut(s)	13, 215, 271, 456, 1268, 1294, 1387, 1532, 1741
Hin6I	GCGC	2 cut(s)	312, 1281
HinP1I	GCGC	2 cut(s)	312, 1281
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HindIII	AAGCTT	1 cut(s)	1246
HinfI	GANTC	5 cut(s)	491, 584, 784, 982, 1136
HpaII	CCGG	6 cut(s)	29, 400, 1310, 1467, 1683, 1716
HphI	GGTGA	7 cut(s)	487, 691, 728, 1159, 1337, 1799, 1846
Hpy166II	GTNNAC	5 cut(s)	155, 364, 1168, 1481, 1545
Hpy188I	TCNGA	8 cut(s)	42, 107, 432, 460, 973, 1074, 1135, 1813
Hpy188III	TCNNGA	6 cut(s)	10, 400, 1252, 1254, 1265, 1700
Hpy8I	GTNNAC	5 cut(s)	155, 364, 1168, 1481, 1545
HpyAV	CCTTC	3 cut(s)	750, 1098, 1144
HpyCH4III	ACNGT	6 cut(s)	274, 567, 826, 897, 967, 1478
HpyCH4IV	ACGT	1 cut(s)	1192
HpyF10VI	GCNNNNNNNGC	5 cut(s)	506, 740, 942, 1393, 1402
HpyF3I	CTNAG	8 cut(s)	75, 1071, 1077, 1182, 1298, 1625, 1758, 1887
HpySE526I	ACGT	1 cut(s)	1192
Hsp92II	CATG	9 cut(s)	13, 215, 271, 456, 1268, 1294, 1387, 1532, 1741
HspAI	GCGC	2 cut(s)	312, 1281
Kpn2I	TCCGGA	1 cut(s)	399
Kzo9I	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
LmnI	GCTCC	4 cut(s)	402, 1502, 1518, 1533
Lsp1109I	GCAGC	4 cut(s)	220, 326, 961, 1395
LweI	GCATC	4 cut(s)	299, 402, 1472, 1561
MaeI	CTAG	4 cut(s)	359, 390, 510, 1830
MaeII	ACGT	1 cut(s)	1192
MaeIII	GTNAC	2 cut(s)	274, 1051
MalI	GATC	8 cut(s)	22, 975, 1062, 1082, 1086, 1197, 1316, 1488
MbiI	CCGCTC	1 cut(s)	1405
MboI	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
MhlI	GDGCHC	4 cut(s)	157, 1072, 1538, 1820
MlsI	TGGCCA	1 cut(s)	945
MluCI	AATT	9 cut(s)	690, 875, 930, 939, 1038, 1103, 1346, 1850, 1876
MluNI	TGGCCA	1 cut(s)	945
MmeI	TCCRAC	4 cut(s)	85, 879, 1633, 1639
Mox20I	TGGCCA	1 cut(s)	945
Mph1103I	ATGCAT	1 cut(s)	289
MroI	TCCGGA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	945
MslI	CAYNNNNRTG	3 cut(s)	210, 594, 1289
Msp20I	TGGCCA	1 cut(s)	945
MspCI	CTTAAG	1 cut(s)	1414
MspI	CCGG	6 cut(s)	29, 400, 1310, 1467, 1683, 1716
MspR9I	CCNGG	9 cut(s)	222, 326, 1109, 1126, 1310, 1311, 1518, 1683, 1821
MvaI	CCWGG	6 cut(s)	222, 326, 1109, 1126, 1518, 1821
MvnI	CGCG	1 cut(s)	1281
MwoI	GCNNNNNNNGC	5 cut(s)	506, 740, 942, 1393, 1402
NciI	CCSGG	3 cut(s)	1310, 1311, 1683
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
NheI	GCTAGC	1 cut(s)	509
NlaIII	CATG	9 cut(s)	13, 215, 271, 456, 1268, 1294, 1387, 1532, 1741
NlaIV	GGNNCC	3 cut(s)	621, 1498, 1679
NmuCI	GTSAC	2 cut(s)	274, 1051
NsbI	TGCGCA	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	1294, 1387
PaeI	GCATGC	1 cut(s)	1387
PaeR7I	CTCGAG	1 cut(s)	1252
PagI	TCATGA	2 cut(s)	9, 1264
PciI	ACATGT	1 cut(s)	1290
PfeI	GAWTC	5 cut(s)	491, 584, 784, 982, 1136
PfoI	TCCNGGA	1 cut(s)	1107
PkrI	GCNGC	6 cut(s)	235, 316, 889, 951, 1407, 1410
Ple19I	CGATCG	1 cut(s)	1063
PmaCI	CACGTG	1 cut(s)	1193
PmlI	CACGTG	1 cut(s)	1193
Ppu21I	YACGTR	1 cut(s)	1193
PpuMI	RGGWCCY	1 cut(s)	1432
PscI	ACATGT	1 cut(s)	1290
PshBI	ATTAAT	1 cut(s)	1349
Psp124BI	GAGCTC	1 cut(s)	1538
Psp5II	RGGWCCY	1 cut(s)	1432
Psp6I	CCWGG	6 cut(s)	220, 324, 1107, 1124, 1516, 1819
PspCI	CACGTG	1 cut(s)	1193
PspGI	CCWGG	6 cut(s)	220, 324, 1107, 1124, 1516, 1819
PspN4I	GGNNCC	3 cut(s)	621, 1498, 1679
PspPI	GGNCC	4 cut(s)	227, 456, 1432, 1506
PspPPI	RGGWCCY	1 cut(s)	1432
PstI	CTGCAG	3 cut(s)	165, 847, 1361
PstNI	CAGNNNCTG	1 cut(s)	169
PvuI	CGATCG	1 cut(s)	1063
RsaI	GTAC	3 cut(s)	323, 335, 1480
RsaNI	GTAC	3 cut(s)	322, 334, 1479
RseI	CAYNNNNRTG	3 cut(s)	210, 594, 1289
SacI	GAGCTC	1 cut(s)	1538
SatI	GCNGC	6 cut(s)	234, 315, 888, 950, 1406, 1409
Sau3AI	GATC	8 cut(s)	20, 973, 1060, 1080, 1084, 1195, 1314, 1486
Sau96I	GGNCC	4 cut(s)	227, 456, 1432, 1506
SbfI	CCTGCAGG	1 cut(s)	847
ScrFI	CCNGG	9 cut(s)	222, 326, 1109, 1126, 1310, 1311, 1518, 1683, 1821
SdaI	CCTGCAGG	1 cut(s)	847
SduI	GDGCHC	4 cut(s)	157, 1072, 1538, 1820
SfaNI	GCATC	4 cut(s)	299, 402, 1472, 1561
SfcI	CTRYAG	3 cut(s)	161, 843, 1357
Sfr274I	CTCGAG	1 cut(s)	1252
SinI	GGWCC	3 cut(s)	227, 456, 1432
SlaI	CTCGAG	1 cut(s)	1252
SmaI	CCCGGG	1 cut(s)	1311
SmiMI	CAYNNNNRTG	3 cut(s)	210, 594, 1289
SmlI	CTYRAG	3 cut(s)	1252, 1414, 1537
SmoI	CTYRAG	3 cut(s)	1252, 1414, 1537
SphI	GCATGC	1 cut(s)	1387
Sse8387I	CCTGCAGG	1 cut(s)	847
Sse9I	AATT	9 cut(s)	690, 875, 930, 939, 1038, 1103, 1346, 1850, 1876
SsiI	CCGC	5 cut(s)	225, 676, 887, 1279, 1405
SspMI	CTAG	4 cut(s)	359, 390, 510, 1830
SstI	GAGCTC	1 cut(s)	1538
StyD4I	CCNGG	9 cut(s)	220, 324, 1107, 1124, 1308, 1309, 1516, 1681, 1819
StyI	CCWWGG	4 cut(s)	452, 504, 525, 1143
TaaI	ACNGT	6 cut(s)	274, 567, 826, 897, 967, 1478
TaiI	ACGT	1 cut(s)	1195
TaqI	TCGA	9 cut(s)	23, 307, 489, 915, 1063, 1083, 1253, 1742, 1862
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	9 cut(s)	690, 875, 930, 939, 1038, 1103, 1346, 1850, 1876
TatI	WGTACW	1 cut(s)	1478
TauI	GCSGC	2 cut(s)	890, 1408
TfiI	GAWTC	5 cut(s)	491, 584, 784, 982, 1136
TscAI	CASTG	3 cut(s)	488, 596, 856
TseFI	GTSAC	2 cut(s)	274, 1051
TseI	GCWGC	4 cut(s)	233, 314, 949, 1408
Tsp45I	GTSAC	2 cut(s)	274, 1051
TspDTI	ATGAA	7 cut(s)	17, 26, 201, 213, 1014, 1029, 1726
TspMI	CCCGGG	1 cut(s)	1309
TspRI	CASTG	3 cut(s)	488, 596, 856
Vha464I	CTTAAG	1 cut(s)	1414
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	3 cut(s)	227, 456, 1432
VspI	ATTAAT	1 cut(s)	1349
XapI	RAATTY	3 cut(s)	1103, 1850, 1876
XceI	RCATGY	2 cut(s)	1294, 1387
XcmI	CCANNNNNNNNNTGG	3 cut(s)	218, 630, 1150
XhoI	CTCGAG	1 cut(s)	1252
XmaI	CCCGGG	1 cut(s)	1309
XmiI	GTMKAC	2 cut(s)	363, 1544
XspI	CTAG	4 cut(s)	359, 390, 510, 1830
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.